data_MDV
# 
_chem_comp.id                                    MDV 
_chem_comp.name                                  "(7S,8S)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydro-3H-imidazo[2,1-i]purine-7,8-diol" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H16 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-07-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.258 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MDV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3O1U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MDV P      P      P 0 1 N N N 0.146  0.104  -1.105 5.881  1.114  0.212  P      MDV 1  
MDV N1     N1     N 0 1 N N N -0.264 -3.457 6.054  -4.747 -0.241 0.539  N1     MDV 2  
MDV C2     C2     C 0 1 N N N 1.044  -3.822 5.886  -3.991 -1.171 1.183  C2     MDV 3  
MDV N3     N3     N 0 1 N N N 1.794  -3.179 4.949  -2.699 -1.235 1.064  N3     MDV 4  
MDV C4     C4     C 0 1 Y N N 1.233  -2.180 4.215  -2.010 -0.382 0.290  C4     MDV 5  
MDV C5     C5     C 0 1 Y N N -0.091 -1.804 4.407  -2.684 0.612  -0.416 C5     MDV 6  
MDV C6     C6     C 0 1 N N N -0.836 -2.512 5.319  -4.150 0.688  -0.284 C6     MDV 7  
MDV N6     N6     N 0 1 N N N -2.087 -2.412 5.543  -5.001 1.515  -0.833 N6     MDV 8  
MDV N7     N7     N 0 1 Y N N -0.384 -0.785 3.589  -1.764 1.320  -1.104 N7     MDV 9  
MDV C8     C8     C 0 1 Y N N 0.750  -0.552 2.897  -0.580 0.829  -0.868 C8     MDV 10 
MDV N9     N9     N 0 1 Y N N 1.740  -1.413 3.236  -0.683 -0.225 -0.011 N9     MDV 11 
MDV "C1'"  "C1'"  C 0 1 N N R 3.065  -1.525 2.682  0.423  -1.041 0.497  "C1'"  MDV 12 
MDV O1P    O1P    O 0 1 N N N 0.119  -0.241 -2.541 5.615  2.036  -0.915 O1P    MDV 13 
MDV "C2'"  "C2'"  C 0 1 N N N 3.397  -2.958 2.187  0.589  -2.300 -0.376 "C2'"  MDV 14 
MDV C22    C22    C 0 1 N N S -1.196 -4.018 6.961  -6.200 -0.006 0.537  C22    MDV 15 
MDV C23    C23    C 0 1 N N S -2.502 -3.317 6.508  -6.369 1.202  -0.403 C23    MDV 16 
MDV H1     H1     H 0 1 N N N -1.258 -5.116 6.949  -6.728 -0.875 0.144  H1     MDV 17 
MDV O26    O26    O 0 1 N N N -3.417 -4.239 5.918  -7.179 0.849  -1.526 O26    MDV 18 
MDV O2P    O2P    O 0 1 N N N -0.039 1.595  -0.937 6.266  1.965  1.523  O2P    MDV 19 
MDV "C3'"  "C3'"  C 0 1 N N S 4.003  -2.740 0.797  2.043  -2.209 -0.900 "C3'"  MDV 20 
MDV "O3'"  "O3'"  O 0 1 N N N 5.424  -2.651 0.893  2.674  -3.491 -0.878 "O3'"  MDV 21 
MDV "C4'"  "C4'"  C 0 1 N N R 3.382  -1.392 0.370  2.700  -1.252 0.127  "C4'"  MDV 22 
MDV "O4'"  "O4'"  O 0 1 N N N 3.297  -0.626 1.582  1.653  -0.301 0.417  "O4'"  MDV 23 
MDV "C5'"  "C5'"  C 0 1 N N N 1.987  -1.511 -0.314 3.911  -0.549 -0.489 "C5'"  MDV 24 
MDV "O5'"  "O5'"  O 0 1 N N N 1.485  -0.283 -0.493 4.565  0.236  0.510  "O5'"  MDV 25 
MDV H2     H2     H 0 1 N N N 1.475  -4.608 6.488  -4.487 -1.886 1.822  H2     MDV 26 
MDV H8     H8     H 0 1 N N N 0.857  0.229  2.159  0.343  1.201  -1.288 H8     MDV 27 
MDV "H1'"  "H1'"  H 0 1 N N N 3.721  -1.259 3.524  0.228  -1.329 1.530  "H1'"  MDV 28 
MDV "H2'"  "H2'"  H 0 1 N N N 4.109  -3.459 2.860  0.456  -3.200 0.223  "H2'"  MDV 29 
MDV "H2'A" "H2'A" H 0 0 N N N 2.493  -3.583 2.136  -0.117 -2.284 -1.206 "H2'A" MDV 30 
MDV "H3'"  "H3'"  H 0 1 N N N 3.800  -3.551 0.083  2.069  -1.782 -1.903 "H3'"  MDV 31 
MDV "HO3'" "HO3'" H 0 0 N N N 5.792  -2.516 0.028  2.243  -4.151 -1.438 "HO3'" MDV 32 
MDV "H4'"  "H4'"  H 0 1 N N N 4.008  -0.921 -0.402 2.987  -1.794 1.028  "H4'"  MDV 33 
MDV "H5'"  "H5'"  H 0 1 N N N 2.094  -2.013 -1.287 4.605  -1.294 -0.878 "H5'"  MDV 34 
MDV "H5'A" "H5'A" H 0 0 N N N 1.311  -2.098 0.325  3.581  0.098  -1.302 "H5'A" MDV 35 
MDV O8     O8     O 0 1 N N N -0.976 -0.613 -0.388 7.102  0.137  -0.171 O8     MDV 36 
MDV H13    H13    H 0 1 N N N -0.134 2.001  -1.791 7.052  2.519  1.416  H13    MDV 37 
MDV H14    H14    H 0 1 N N N -1.466 -1.137 -1.010 7.332  -0.496 0.523  H14    MDV 38 
MDV O24    O24    O 0 1 N N N -0.847 -3.704 8.308  -6.660 0.312  1.851  O24    MDV 39 
MDV H141   H141   H 0 0 N N N -3.023 -2.853 7.358  -6.803 2.047  0.132  H141   MDV 40 
MDV H15    H15    H 0 1 N N N -3.706 -4.863 6.574  -7.270 1.554  -2.182 H15    MDV 41 
MDV H16    H16    H 0 1 N N N -1.484 -4.089 8.899  -7.611 0.476  1.906  H16    MDV 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MDV P     O1P    DOUB N N 1  
MDV P     O2P    SING N N 2  
MDV P     "O5'"  SING N N 3  
MDV N1    C2     SING N N 4  
MDV N1    C6     SING N N 5  
MDV N1    C22    SING N N 6  
MDV C2    N3     DOUB N N 7  
MDV C2    H2     SING N N 8  
MDV N3    C4     SING N N 9  
MDV C4    C5     DOUB Y N 10 
MDV C4    N9     SING Y N 11 
MDV C5    C6     SING N N 12 
MDV C5    N7     SING Y N 13 
MDV C6    N6     DOUB N N 14 
MDV N6    C23    SING N N 15 
MDV N7    C8     DOUB Y N 16 
MDV C8    N9     SING Y N 17 
MDV C8    H8     SING N N 18 
MDV N9    "C1'"  SING N N 19 
MDV "C1'" "C2'"  SING N N 20 
MDV "C1'" "O4'"  SING N N 21 
MDV "C1'" "H1'"  SING N N 22 
MDV "C2'" "C3'"  SING N N 23 
MDV "C2'" "H2'"  SING N N 24 
MDV "C2'" "H2'A" SING N N 25 
MDV C22   C23    SING N N 26 
MDV C22   H1     SING N N 27 
MDV C23   O26    SING N N 28 
MDV O2P   H13    SING N N 29 
MDV "C3'" "O3'"  SING N N 30 
MDV "C3'" "C4'"  SING N N 31 
MDV "C3'" "H3'"  SING N N 32 
MDV "O3'" "HO3'" SING N N 33 
MDV "C4'" "O4'"  SING N N 34 
MDV "C4'" "C5'"  SING N N 35 
MDV "C4'" "H4'"  SING N N 36 
MDV "C5'" "O5'"  SING N N 37 
MDV "C5'" "H5'"  SING N N 38 
MDV "C5'" "H5'A" SING N N 39 
MDV O8    P      SING N N 40 
MDV O8    H14    SING N N 41 
MDV C22   O24    SING N N 42 
MDV C23   H141   SING N N 43 
MDV O26   H15    SING N N 44 
MDV O24   H16    SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MDV SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n3cnc2c3N=CN1C2=NC(O)C1O)CC4O"                                                                                                                      
MDV SMILES_CANONICAL CACTVS               3.370 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c2N=CN4[C@@H](O)[C@H](O)N=C34"                                                                                           
MDV SMILES           CACTVS               3.370 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c2N=CN4[CH](O)[CH](O)N=C34"                                                                                                   
MDV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=CN4C2=N[C@H]([C@@H]4O)O"                                                                                            
MDV SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=CN4C2=NC(C4O)O"                                                                                                                  
MDV InChI            InChI                1.03  "InChI=1S/C12H16N5O8P/c18-5-1-7(25-6(5)2-24-26(21,22)23)16-3-13-8-9(16)14-4-17-10(8)15-11(19)12(17)20/h3-7,11-12,18-20H,1-2H2,(H2,21,22,23)/t5-,6+,7+,11-,12-/m0/s1" 
MDV InChIKey         InChI                1.03  MMGFTCXHWADSBK-BJMSXLCZSA-N                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MDV "SYSTEMATIC NAME" ACDLabs              12.01 "(7S,8S)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydro-3H-imidazo[2,1-i]purine-7,8-diol"                
MDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-[(7S,8S)-7,8-dihydroxy-7,8-dihydroimidazo[2,1-f]purin-3-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MDV "Create component"  2010-07-23 RCSB 
MDV "Modify descriptor" 2011-06-04 RCSB 
# 
