data_JYV
# 
_chem_comp.id                                    JYV 
_chem_comp.name                                  "(2R)-{1-[{7-[2-({[3-(dimethylamino)propyl](methyl)amino}methyl)-1,3-thiazol-4-yl]-4-methoxy-1H-pyrrolo[2,3-c]pyridin-3-yl}(oxo)acetyl]piperidin-4-yl}(phenyl)acetonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H39 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-10-23 
_chem_comp.pdbx_modified_date                    2019-01-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        613.773 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JYV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6MU6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JYV C10 C1  C 0 1 N N N -47.686 -27.620 -12.831 4.510  -0.631 2.107  C10 JYV 1  
JYV C11 C2  C 0 1 N N N -46.868 -26.409 -12.374 4.686  -1.534 0.883  C11 JYV 2  
JYV C12 C3  C 0 1 N N N -45.657 -26.132 -13.211 5.502  -0.794 -0.179 C12 JYV 3  
JYV C13 C4  C 0 1 N N N -44.831 -27.382 -13.362 4.752  0.467  -0.614 C13 JYV 4  
JYV C14 C5  C 0 1 N N N -45.617 -28.591 -13.871 4.576  1.393  0.593  C14 JYV 5  
JYV C15 C6  C 0 1 Y N N -53.577 -32.173 -16.490 -3.568 2.579  -0.917 C15 JYV 6  
JYV C16 C7  C 0 1 Y N N -54.276 -32.270 -17.746 -4.729 3.253  -1.058 C16 JYV 7  
JYV C17 C8  C 0 1 Y N N -55.606 -33.436 -16.021 -4.823 0.831  -1.502 C17 JYV 8  
JYV C18 C9  C 0 1 N N N -56.729 -34.242 -15.317 -5.125 -0.611 -1.822 C18 JYV 9  
JYV C19 C10 C 0 1 N N N -56.480 -36.441 -14.336 -6.048 -2.649 -0.898 C19 JYV 10 
JYV C20 C11 C 0 1 N N N -55.021 -36.887 -14.083 -6.675 -3.249 0.363  C20 JYV 11 
JYV C21 C12 C 0 1 N N R -45.353 -24.941 -13.730 5.710  -1.707 -1.390 C21 JYV 12 
JYV C22 C13 C 0 1 Y N N -44.259 -24.833 -14.804 6.450  -2.948 -0.962 C22 JYV 13 
JYV C23 C14 C 0 1 Y N N -44.444 -25.502 -16.167 5.869  -4.191 -1.129 C23 JYV 14 
JYV C24 C15 C 0 1 Y N N -43.351 -25.393 -17.232 6.548  -5.329 -0.737 C24 JYV 15 
JYV C25 C16 C 0 1 Y N N -42.079 -24.610 -16.935 7.808  -5.225 -0.178 C25 JYV 16 
JYV C26 C17 C 0 1 Y N N -41.894 -23.937 -15.578 8.389  -3.981 -0.012 C26 JYV 17 
JYV C27 C18 C 0 1 Y N N -42.987 -24.050 -14.512 7.712  -2.843 -0.408 C27 JYV 18 
JYV C28 C19 C 0 1 N N N -45.781 -23.686 -12.972 6.494  -0.995 -2.412 C28 JYV 19 
JYV C29 C20 C 0 1 N N N -48.361 -28.225 -16.371 1.227  6.547  0.240  C29 JYV 20 
JYV C30 C21 C 0 1 N N N -57.718 -36.143 -16.359 -4.398 -1.393 0.351  C30 JYV 21 
JYV C31 C22 C 0 1 N N N -54.464 -37.609 -15.338 -7.225 -4.641 0.046  C31 JYV 22 
JYV C01 C23 C 0 1 Y N N -52.229 -31.446 -16.254 -2.300 3.231  -0.514 C01 JYV 23 
JYV C02 C24 C 0 1 Y N N -51.591 -31.406 -14.797 -1.298 2.480  0.112  C02 JYV 24 
JYV C03 C25 C 0 1 Y N N -50.400 -30.755 -14.563 -0.108 3.127  0.480  C03 JYV 25 
JYV C04 C26 C 0 1 Y N N -49.682 -30.054 -15.751 0.031  4.492  0.210  C04 JYV 26 
JYV C05 C27 C 0 1 Y N N -50.290 -30.089 -17.141 -1.012 5.157  -0.413 C05 JYV 27 
JYV C06 C28 C 0 1 Y N N -51.123 -31.638 -12.626 0.003  0.924  1.065  C06 JYV 28 
JYV C07 C29 C 0 1 Y N N -50.107 -30.906 -13.200 0.737  2.097  1.105  C07 JYV 29 
JYV C08 C30 C 0 1 N N N -48.872 -30.359 -12.390 2.080  2.275  1.654  C08 JYV 30 
JYV C09 C31 C 0 1 N N N -47.474 -30.196 -13.050 2.800  1.115  2.255  C09 JYV 31 
JYV C32 C32 C 0 1 N N N -55.570 -39.148 -16.775 -9.015 -4.456 1.666  C32 JYV 32 
JYV C33 C33 C 0 1 N N N -53.972 -39.948 -15.210 -8.152 -6.635 1.059  C33 JYV 33 
JYV N34 N1  N 0 1 Y N N -51.554 -30.779 -17.373 -2.119 4.523  -0.753 N34 JYV 34 
JYV N35 N2  N 0 1 Y N N -52.040 -31.949 -13.605 -1.187 1.158  0.482  N35 JYV 35 
JYV N36 N3  N 0 1 N N N -46.934 -28.833 -13.249 3.921  0.644  1.673  N36 JYV 36 
JYV N37 N4  N 0 1 Y N N -54.429 -32.910 -15.395 -3.664 1.280  -1.165 N37 JYV 37 
JYV N38 N5  N 0 1 N N N -56.562 -35.680 -15.606 -5.520 -1.313 -0.594 N38 JYV 38 
JYV N39 N6  N 0 1 N N N -46.099 -22.759 -12.406 7.100  -0.446 -3.201 N39 JYV 39 
JYV N40 N7  N 0 1 N N N -55.030 -38.961 -15.439 -7.827 -5.216 1.256  N40 JYV 40 
JYV O41 O1  O 0 1 N N N -49.013 -30.065 -11.252 2.609  3.369  1.622  O41 JYV 41 
JYV O42 O2  O 0 1 N N N -46.855 -31.146 -13.395 2.377  0.596  3.267  O42 JYV 42 
JYV O43 O3  O 0 1 N N N -48.474 -29.378 -15.583 1.168  5.154  0.552  O43 JYV 43 
JYV S44 S1  S 0 1 Y N N -55.557 -33.061 -17.509 -5.968 2.098  -1.543 S44 JYV 44 
JYV H1  H1  H 0 1 N N N -48.342 -27.909 -11.997 3.847  -1.113 2.826  H1  JYV 45 
JYV H2  H2  H 0 1 N N N -48.299 -27.301 -13.686 5.480  -0.446 2.568  H2  JYV 46 
JYV H3  H3  H 0 1 N N N -47.518 -25.522 -12.405 5.210  -2.444 1.175  H3  JYV 47 
JYV H4  H4  H 0 1 N N N -46.539 -26.586 -11.340 3.708  -1.791 0.477  H4  JYV 48 
JYV H5  H5  H 0 1 N N N -46.221 -26.390 -14.120 6.471  -0.516 0.236  H5  JYV 49 
JYV H6  H6  H 0 1 N N N -44.017 -27.175 -14.073 5.322  0.981  -1.387 H6  JYV 50 
JYV H7  H7  H 0 1 N N N -44.405 -27.635 -12.380 3.773  0.191  -1.006 H7  JYV 51 
JYV H8  H8  H 0 1 N N N -45.778 -28.454 -14.951 5.552  1.743  0.931  H8  JYV 52 
JYV H9  H9  H 0 1 N N N -44.999 -29.485 -13.703 3.958  2.246  0.313  H9  JYV 53 
JYV H10 H10 H 0 1 N N N -53.950 -31.856 -18.689 -4.873 4.311  -0.900 H10 JYV 54 
JYV H13 H13 H 0 1 N N N -56.672 -34.078 -14.231 -5.939 -0.659 -2.546 H13 JYV 55 
JYV H14 H14 H 0 1 N N N -57.709 -33.905 -15.688 -4.237 -1.084 -2.241 H14 JYV 56 
JYV H15 H15 H 0 1 N N N -57.127 -37.328 -14.400 -5.237 -3.291 -1.240 H15 JYV 57 
JYV H16 H16 H 0 1 N N N -56.815 -35.802 -13.506 -6.805 -2.572 -1.678 H16 JYV 58 
JYV H17 H17 H 0 1 N N N -54.402 -36.004 -13.866 -5.918 -3.326 1.143  H17 JYV 59 
JYV H18 H18 H 0 1 N N N -54.993 -37.574 -13.225 -7.486 -2.607 0.706  H18 JYV 60 
JYV H19 H19 H 0 1 N N N -46.190 -24.914 -14.443 4.741  -1.986 -1.805 H19 JYV 61 
JYV H20 H20 H 0 1 N N N -45.349 -26.053 -16.378 4.885  -4.273 -1.566 H20 JYV 62 
JYV H21 H21 H 0 1 N N N -43.481 -25.870 -18.192 6.094  -6.301 -0.867 H21 JYV 63 
JYV H22 H22 H 0 1 N N N -41.307 -24.531 -17.686 8.338  -6.114 0.129  H22 JYV 64 
JYV H23 H23 H 0 1 N N N -40.992 -23.381 -15.370 9.373  -3.900 0.425  H23 JYV 65 
JYV H24 H24 H 0 1 N N N -42.855 -23.574 -13.552 8.168  -1.872 -0.282 H24 JYV 66 
JYV H25 H25 H 0 1 N N N -47.387 -27.748 -16.186 2.185  6.952  0.565  H25 JYV 67 
JYV H26 H26 H 0 1 N N N -48.439 -28.498 -17.434 1.122  6.682  -0.837 H26 JYV 68 
JYV H27 H27 H 0 1 N N N -49.168 -27.524 -16.112 0.419  7.069  0.752  H27 JYV 69 
JYV H28 H28 H 0 1 N N N -57.606 -37.215 -16.581 -4.071 -0.386 0.613  H28 JYV 70 
JYV H29 H29 H 0 1 N N N -58.630 -35.985 -15.764 -4.717 -1.917 1.252  H29 JYV 71 
JYV H30 H30 H 0 1 N N N -57.792 -35.579 -17.301 -3.572 -1.934 -0.111 H30 JYV 72 
JYV H31 H31 H 0 1 N N N -54.733 -37.035 -16.237 -7.982 -4.564 -0.735 H31 JYV 73 
JYV H32 H32 H 0 1 N N N -53.369 -37.678 -15.261 -6.414 -5.283 -0.297 H32 JYV 74 
JYV H33 H33 H 0 1 N N N -49.785 -29.601 -17.962 -0.916 6.212  -0.628 H33 JYV 75 
JYV H34 H34 H 0 1 N N N -51.189 -31.920 -11.586 0.334  -0.032 1.444  H34 JYV 76 
JYV H35 H35 H 0 1 N N N -55.996 -40.158 -16.861 -9.754 -4.476 0.865  H35 JYV 77 
JYV H36 H36 H 0 1 N N N -56.356 -38.401 -16.960 -9.441 -4.903 2.564  H36 JYV 78 
JYV H37 H37 H 0 1 N N N -54.766 -39.026 -17.516 -8.733 -3.424 1.873  H37 JYV 79 
JYV H38 H38 H 0 1 N N N -54.393 -40.962 -15.285 -7.242 -7.188 0.824  H38 JYV 80 
JYV H39 H39 H 0 1 N N N -53.183 -39.822 -15.966 -8.597 -7.036 1.970  H39 JYV 81 
JYV H40 H40 H 0 1 N N N -53.545 -39.802 -14.207 -8.860 -6.735 0.235  H40 JYV 82 
JYV H41 H41 H 0 1 N N N -52.881 -32.474 -13.478 -1.873 0.486  0.342  H41 JYV 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JYV C10 C11 SING N N 1  
JYV C10 N36 SING N N 2  
JYV C11 C12 SING N N 3  
JYV C12 C13 SING N N 4  
JYV C12 C21 SING N N 5  
JYV C13 C14 SING N N 6  
JYV C14 N36 SING N N 7  
JYV C15 C16 DOUB Y N 8  
JYV C15 C01 SING N N 9  
JYV C15 N37 SING Y N 10 
JYV C16 S44 SING Y N 11 
JYV C17 C18 SING N N 12 
JYV C17 N37 DOUB Y N 13 
JYV C17 S44 SING Y N 14 
JYV C18 N38 SING N N 15 
JYV C19 C20 SING N N 16 
JYV C19 N38 SING N N 17 
JYV C20 C31 SING N N 18 
JYV C21 C22 SING N N 19 
JYV C21 C28 SING N N 20 
JYV C22 C23 DOUB Y N 21 
JYV C22 C27 SING Y N 22 
JYV C23 C24 SING Y N 23 
JYV C24 C25 DOUB Y N 24 
JYV C25 C26 SING Y N 25 
JYV C26 C27 DOUB Y N 26 
JYV C28 N39 TRIP N N 27 
JYV C29 O43 SING N N 28 
JYV C30 N38 SING N N 29 
JYV C31 N40 SING N N 30 
JYV C01 C02 DOUB Y N 31 
JYV C01 N34 SING Y N 32 
JYV C02 C03 SING Y N 33 
JYV C02 N35 SING Y N 34 
JYV C03 C04 DOUB Y N 35 
JYV C03 C07 SING Y N 36 
JYV C04 C05 SING Y N 37 
JYV C04 O43 SING N N 38 
JYV C05 N34 DOUB Y N 39 
JYV C06 C07 DOUB Y N 40 
JYV C06 N35 SING Y N 41 
JYV C07 C08 SING N N 42 
JYV C08 C09 SING N N 43 
JYV C08 O41 DOUB N N 44 
JYV C09 N36 SING N N 45 
JYV C09 O42 DOUB N N 46 
JYV C32 N40 SING N N 47 
JYV C33 N40 SING N N 48 
JYV C10 H1  SING N N 49 
JYV C10 H2  SING N N 50 
JYV C11 H3  SING N N 51 
JYV C11 H4  SING N N 52 
JYV C12 H5  SING N N 53 
JYV C13 H6  SING N N 54 
JYV C13 H7  SING N N 55 
JYV C14 H8  SING N N 56 
JYV C14 H9  SING N N 57 
JYV C16 H10 SING N N 58 
JYV C18 H13 SING N N 59 
JYV C18 H14 SING N N 60 
JYV C19 H15 SING N N 61 
JYV C19 H16 SING N N 62 
JYV C20 H17 SING N N 63 
JYV C20 H18 SING N N 64 
JYV C21 H19 SING N N 65 
JYV C23 H20 SING N N 66 
JYV C24 H21 SING N N 67 
JYV C25 H22 SING N N 68 
JYV C26 H23 SING N N 69 
JYV C27 H24 SING N N 70 
JYV C29 H25 SING N N 71 
JYV C29 H26 SING N N 72 
JYV C29 H27 SING N N 73 
JYV C30 H28 SING N N 74 
JYV C30 H29 SING N N 75 
JYV C30 H30 SING N N 76 
JYV C31 H31 SING N N 77 
JYV C31 H32 SING N N 78 
JYV C05 H33 SING N N 79 
JYV C06 H34 SING N N 80 
JYV C32 H35 SING N N 81 
JYV C32 H36 SING N N 82 
JYV C32 H37 SING N N 83 
JYV C33 H38 SING N N 84 
JYV C33 H39 SING N N 85 
JYV C33 H40 SING N N 86 
JYV N35 H41 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JYV SMILES           ACDLabs              12.01 "C1CC(CCN1C(C(c4c3c(c(c2csc(CN(CCCN(C)C)C)n2)ncc3OC)nc4)=O)=O)C(c5ccccc5)C#N" 
JYV InChI            InChI                1.03  
"InChI=1S/C33H39N7O3S/c1-38(2)13-8-14-39(3)20-28-37-26(21-44-28)30-31-29(27(43-4)19-36-30)25(18-35-31)32(41)33(42)40-15-11-23(12-16-40)24(17-34)22-9-6-5-7-10-22/h5-7,9-10,18-19,21,23-24,35H,8,11-16,20H2,1-4H3/t24-/m0/s1" 
JYV InChIKey         InChI                1.03  SZUBSUMMJMHMJF-DEOSSOPVSA-N 
JYV SMILES_CANONICAL CACTVS               3.385 "COc1cnc(c2csc(CN(C)CCCN(C)C)n2)c3[nH]cc(C(=O)C(=O)N4CCC(CC4)[C@@H](C#N)c5ccccc5)c13" 
JYV SMILES           CACTVS               3.385 "COc1cnc(c2csc(CN(C)CCCN(C)C)n2)c3[nH]cc(C(=O)C(=O)N4CCC(CC4)[CH](C#N)c5ccccc5)c13" 
JYV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(C)CCCN(C)Cc1nc(cs1)c2c3c(c(c[nH]3)C(=O)C(=O)N4CCC(CC4)[C@@H](C#N)c5ccccc5)c(cn2)OC" 
JYV SMILES           "OpenEye OEToolkits" 2.0.6 "CN(C)CCCN(C)Cc1nc(cs1)c2c3c(c(c[nH]3)C(=O)C(=O)N4CCC(CC4)C(C#N)c5ccccc5)c(cn2)OC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JYV "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-{1-[{7-[2-({[3-(dimethylamino)propyl](methyl)amino}methyl)-1,3-thiazol-4-yl]-4-methoxy-1H-pyrrolo[2,3-c]pyridin-3-yl}(oxo)acetyl]piperidin-4-yl}(phenyl)acetonitrile"                          
JYV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-[1-[2-[7-[2-[[3-(dimethylamino)propyl-methyl-amino]methyl]-1,3-thiazol-4-yl]-4-methoxy-1~{H}-pyrrolo[2,3-c]pyridin-3-yl]-2-oxidanylidene-ethanoyl]piperidin-4-yl]-2-phenyl-ethanenitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JYV "Create component" 2018-10-23 RCSB 
JYV "Initial release"  2019-01-16 RCSB 
# 
