data_DAV
# 
_chem_comp.id                                    DAV 
_chem_comp.name                                  "DELTA-AMINO VALERIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H12 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     1999-09-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        118.154 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DAV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JDW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DAV OXT  OT1  O 0 1 N Y N Y N Y 43.954 73.980 18.367 -3.374 -0.662 0.000  OT1  DAV 1  
DAV O    OT2  O 0 1 N N N Y N Y 43.162 72.212 17.337 -2.228 1.227  0.001  OT2  DAV 2  
DAV CB   CB   C 0 1 N N N Y N N 45.784 71.103 17.478 0.248  0.282  0.000  CB   DAV 3  
DAV CG   CG   C 0 1 N N N Y N N 47.158 70.836 16.917 1.580  -0.472 0.000  CG   DAV 4  
DAV CD   CD   C 0 1 N N N Y N N 47.738 69.604 17.540 2.734  0.533  0.000  CD   DAV 5  
DAV N    NE   N 1 1 N N N Y Y N 48.075 68.542 16.573 4.013  -0.191 0.000  NE   DAV 6  
DAV C    C    C 0 1 N N N Y N Y 44.106 72.939 17.717 -2.218 0.019  0.000  C    DAV 7  
DAV C1   CA   C 0 1 N N N Y N N 45.512 72.550 17.359 -0.906 -0.723 0.000  CA   DAV 8  
DAV HXT  HOT1 H 0 0 N Y N Y N Y 44.671 74.532 18.655 -4.216 -0.186 0.000  HOT1 DAV 9  
DAV HCB1 HCB1 H 0 0 N N N Y N N 44.995 70.476 17.000 0.185  0.907  0.891  HCB1 DAV 10 
DAV HCB2 HCB2 H 0 0 N N N Y N N 45.664 70.726 18.520 0.185  0.908  -0.889 HCB2 DAV 11 
DAV HCG1 HCG1 H 0 0 N N N Y N N 47.149 70.776 15.803 1.643  -1.097 -0.891 HCG1 DAV 12 
DAV HCG2 HCG2 H 0 0 N N N Y N N 47.832 71.716 17.028 1.643  -1.098 0.889  HCG2 DAV 13 
DAV HCD1 HCD1 H 0 0 N N N Y N N 48.626 69.861 18.162 2.671  1.158  0.891  HCD1 DAV 14 
DAV HCD2 HCD2 H 0 0 N N N Y N N 47.059 69.210 18.332 2.671  1.159  -0.889 HCD2 DAV 15 
DAV H    HT1  H 0 1 N N N Y Y N 48.776 68.901 15.894 4.071  -0.771 0.823  HT1  DAV 16 
DAV H2   HT2  H 0 1 N Y N Y Y N 47.216 68.252 16.063 4.774  0.472  0.000  HT2  DAV 17 
DAV H3   HT3  H 0 1 N Y N Y Y N 48.470 67.724 17.080 4.071  -0.770 -0.824 HT3  DAV 18 
DAV HCA1 HCA1 H 0 0 N N N Y N N 46.245 73.136 17.959 -0.843 -1.348 -0.891 HCA1 DAV 19 
DAV HCA2 HCA2 H 0 0 N N N Y N N 45.770 72.914 16.337 -0.843 -1.350 0.889  HCA2 DAV 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DAV OXT C    SING N N 1  
DAV OXT HXT  SING N N 2  
DAV O   C    DOUB N N 3  
DAV CB  CG   SING N N 4  
DAV CB  C1   SING N N 5  
DAV CB  HCB1 SING N N 6  
DAV CB  HCB2 SING N N 7  
DAV CG  CD   SING N N 8  
DAV CG  HCG1 SING N N 9  
DAV CG  HCG2 SING N N 10 
DAV CD  N    SING N N 11 
DAV CD  HCD1 SING N N 12 
DAV CD  HCD2 SING N N 13 
DAV N   H    SING N N 14 
DAV N   H2   SING N N 15 
DAV N   H3   SING N N 16 
DAV C   C1   SING N N 17 
DAV C1  HCA1 SING N N 18 
DAV C1  HCA2 SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DAV SMILES           ACDLabs              10.04 "O=C(O)CCCC[NH3+]"                                        
DAV SMILES_CANONICAL CACTVS               3.341 "[NH3+]CCCCC(O)=O"                                        
DAV SMILES           CACTVS               3.341 "[NH3+]CCCCC(O)=O"                                        
DAV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC[NH3+])CC(=O)O"                                      
DAV SMILES           "OpenEye OEToolkits" 1.5.0 "C(CC[NH3+])CC(=O)O"                                      
DAV InChI            InChI                1.03  "InChI=1S/C5H11NO2/c6-4-2-1-3-5(7)8/h1-4,6H2,(H,7,8)/p+1" 
DAV InChIKey         InChI                1.03  JJMDCOVWQOJGCB-UHFFFAOYSA-O                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DAV "SYSTEMATIC NAME" ACDLabs              10.04 4-carboxybutan-1-aminium          
DAV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-5-oxo-pentyl)azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DAV "Create component"  1999-09-15 RCSB 
DAV "Modify descriptor" 2011-06-04 RCSB 
DAV "Modify backbone"   2023-11-03 PDBE 
DAV "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 DAV ?   None "Non-standard residue"           "Amino-acid side chain and backbone" "Any position" ?  ?  ? ? 
2 DAV LYS None "Covalent chemical modification" "Amino-acid side chain"              "Any position" CG NZ ? ? 
# 
