data_D3V
# 
_chem_comp.id                                    D3V 
_chem_comp.name                                  " 1a,20S-dihydroxyvitamin D3" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H44 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-01-21 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        416.636 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D3V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MX7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D3V C4  C1  C 0 1 N N S -26.643 16.961 -6.198  -3.159 0.452  -0.098 C4  D3V 1  
D3V C5  C2  C 0 1 N N N -25.358 16.872 -5.388  -3.536 1.348  -1.279 C5  D3V 2  
D3V C6  C3  C 0 1 N N N -26.444 18.034 -7.278  -4.427 0.020  0.641  C6  D3V 3  
D3V C7  C4  C 0 1 N N N -25.286 17.805 -8.244  -5.337 -0.753 -0.316 C7  D3V 4  
D3V C8  C5  C 0 1 N N N -25.529 18.355 -9.644  -6.605 -1.185 0.422  C8  D3V 5  
D3V C9  C6  C 0 1 N N N -24.799 17.676 -10.779 -7.514 -1.959 -0.535 C9  D3V 6  
D3V C10 C7  C 0 1 N N N -23.301 17.605 -10.569 -8.723 -2.497 0.233  C10 D3V 7  
D3V C11 C8  C 0 1 N N N -25.129 18.354 -12.094 -7.992 -1.027 -1.650 C11 D3V 8  
D3V C12 C9  C 0 1 N N S -29.361 17.044 -5.828  -0.981 1.664  0.144  C12 D3V 9  
D3V C13 C10 C 0 1 N N N -29.716 18.112 -6.881  -0.602 0.614  -0.901 C13 D3V 10 
D3V C14 C11 C 0 1 N N N -29.813 15.655 -6.311  -0.959 3.029  -0.505 C14 D3V 11 
D3V C15 C12 C 0 1 N N N -31.327 15.531 -6.448  0.383  3.170  -1.242 C15 D3V 12 
D3V O2  O1  O 0 1 N N N -33.909 23.418 -5.733  4.068  -2.827 -0.569 O2  D3V 13 
D3V C24 C13 C 0 1 N N S -34.545 22.243 -5.251  4.946  -2.379 0.464  C24 D3V 14 
D3V C23 C14 C 0 1 N N N -35.959 22.157 -5.802  6.350  -2.162 -0.110 C23 D3V 15 
D3V C22 C15 C 0 1 N N R -36.654 20.924 -5.261  6.308  -1.074 -1.183 C22 D3V 16 
D3V O1  O2  O 0 1 N N N -36.698 20.981 -3.833  7.587  -0.980 -1.815 O1  D3V 17 
D3V C21 C16 C 0 1 N N N -35.931 19.668 -5.712  5.957  0.273  -0.544 C21 D3V 18 
D3V C25 C17 C 0 1 N N N -33.818 21.027 -5.770  4.449  -1.060 1.021  C25 D3V 19 
D3V C26 C18 C 0 1 N N N -32.731 21.131 -6.512  3.880  -0.979 2.224  C26 D3V 20 
D3V C20 C19 C 0 1 N N N -34.440 19.732 -5.466  4.625  0.132  0.165  C20 D3V 21 
D3V C19 C20 C 0 1 N N N -33.718 18.599 -5.204  3.648  1.051  0.023  C19 D3V 22 
D3V C18 C21 C 0 1 N N N -32.309 18.497 -4.923  2.373  0.880  0.725  C18 D3V 23 
D3V C17 C22 C 0 1 N N N -31.586 17.373 -4.807  1.408  1.788  0.585  C17 D3V 24 
D3V C   C23 C 0 1 N N S -30.106 17.353 -4.496  0.083  1.665  1.278  C   D3V 25 
D3V C16 C24 C 0 1 N N N -32.039 15.992 -5.180  1.570  3.022  -0.291 C16 D3V 26 
D3V C3  C25 C 0 1 N N S -27.901 17.130 -5.284  -2.250 1.226  0.859  C3  D3V 27 
D3V C2  C26 C 0 1 N N N -27.889 18.424 -4.444  -1.766 0.302  2.008  C2  D3V 28 
D3V C1  C27 C 0 1 N N N -29.333 18.550 -3.903  -0.212 0.331  1.966  C1  D3V 29 
D3V O   O3  O 0 1 N N N -26.771 15.728 -6.929  -2.470 -0.705 -0.578 O   D3V 30 
D3V H9  H1  H 0 1 N N N -25.470 16.109 -4.604  -2.632 1.655  -1.805 H9  D3V 31 
D3V H8  H2  H 0 1 N N N -24.525 16.596 -6.051  -4.184 0.796  -1.961 H8  D3V 32 
D3V H10 H3  H 0 1 N N N -25.149 17.847 -4.923  -4.061 2.230  -0.913 H10 D3V 33 
D3V H12 H4  H 0 1 N N N -26.273 18.995 -6.770  -4.159 -0.618 1.482  H12 D3V 34 
D3V H13 H5  H 0 1 N N N -27.369 18.091 -7.870  -4.953 0.903  1.007  H13 D3V 35 
D3V H15 H6  H 0 1 N N N -25.111 16.722 -8.323  -5.605 -0.115 -1.158 H15 D3V 36 
D3V H14 H7  H 0 1 N N N -24.390 18.292 -7.832  -4.811 -1.636 -0.682 H14 D3V 37 
D3V H16 H8  H 0 1 N N N -25.230 19.414 -9.642  -6.336 -1.823 1.264  H16 D3V 38 
D3V H17 H9  H 0 1 N N N -26.607 18.279 -9.849  -7.130 -0.303 0.788  H17 D3V 39 
D3V H18 H10 H 0 1 N N N -25.172 16.643 -10.839 -6.960 -2.791 -0.969 H18 D3V 40 
D3V H20 H11 H 0 1 N N N -23.088 17.110 -9.610  -9.277 -1.665 0.668  H20 D3V 41 
D3V H21 H12 H 0 1 N N N -22.843 17.031 -11.388 -9.370 -3.048 -0.448 H21 D3V 42 
D3V H19 H13 H 0 1 N N N -22.884 18.623 -10.557 -8.382 -3.161 1.028  H19 D3V 43 
D3V H23 H14 H 0 1 N N N -26.221 18.393 -12.223 -7.131 -0.643 -2.197 H23 D3V 44 
D3V H22 H15 H 0 1 N N N -24.723 19.376 -12.091 -8.640 -1.578 -2.332 H22 D3V 45 
D3V H24 H16 H 0 1 N N N -24.682 17.784 -12.922 -8.546 -0.195 -1.215 H24 D3V 46 
D3V H26 H17 H 0 1 N N N -29.389 19.100 -6.526  -1.357 0.595  -1.688 H26 D3V 47 
D3V H27 H18 H 0 1 N N N -29.208 17.876 -7.828  0.366  0.865  -1.334 H27 D3V 48 
D3V H25 H19 H 0 1 N N N -30.804 18.122 -7.041  -0.545 -0.366 -0.428 H25 D3V 49 
D3V H28 H20 H 0 1 N N N -29.464 14.903 -5.588  -1.782 3.114  -1.215 H28 D3V 50 
D3V H29 H21 H 0 1 N N N -29.356 15.460 -7.292  -1.047 3.803  0.258  H29 D3V 51 
D3V H30 H22 H 0 1 N N N -31.662 16.151 -7.292  0.448  2.402  -2.013 H30 D3V 52 
D3V H31 H23 H 0 1 N N N -31.584 14.479 -6.641  0.427  4.151  -1.715 H31 D3V 53 
D3V H41 H24 H 0 1 N N N -33.026 23.466 -5.385  3.159  -2.977 -0.275 H41 D3V 54 
D3V H3  H25 H 0 1 N N N -34.571 22.225 -4.151  4.986  -3.122 1.260  H3  D3V 55 
D3V H39 H26 H 0 1 N N N -35.919 22.100 -6.900  7.025  -1.856 0.689  H39 D3V 56 
D3V H40 H27 H 0 1 N N N -36.522 23.053 -5.502  6.709  -3.092 -0.550 H40 D3V 57 
D3V H2  H28 H 0 1 N N N -37.678 20.898 -5.661  5.554  -1.328 -1.928 H2  D3V 58 
D3V H38 H29 H 0 1 N N N -37.134 20.206 -3.498  7.634  -0.308 -2.509 H38 D3V 59 
D3V H37 H30 H 0 1 N N N -36.104 19.530 -6.789  6.728  0.551  0.175  H37 D3V 60 
D3V H36 H31 H 0 1 N N N -36.342 18.809 -5.162  5.883  1.039  -1.316 H36 D3V 61 
D3V H42 H32 H 0 1 N N N -32.340 22.106 -6.763  3.536  -0.025 2.595  H42 D3V 62 
D3V H43 H33 H 0 1 N N N -32.233 20.241 -6.868  3.764  -1.867 2.828  H43 D3V 63 
D3V H35 H34 H 0 1 N N N -34.271 17.671 -5.209  3.804  1.913  -0.608 H35 D3V 64 
D3V H34 H35 H 0 1 N N N -31.776 19.427 -4.791  2.217  0.018  1.356  H34 D3V 65 
D3V H   H36 H 0 1 N N N -29.926 16.497 -3.829  -0.074 2.502  1.958  H   D3V 66 
D3V H32 H37 H 0 1 N N N -33.125 16.000 -5.355  2.487  2.931  -0.873 H32 D3V 67 
D3V H33 H38 H 0 1 N N N -31.805 15.298 -4.359  1.634  3.906  0.343  H33 D3V 68 
D3V H1  H39 H 0 1 N N N -27.826 16.314 -4.550  -2.776 2.091  1.263  H1  D3V 69 
D3V H6  H40 H 0 1 N N N -27.170 18.343 -3.616  -2.122 0.680  2.967  H6  D3V 70 
D3V H7  H41 H 0 1 N N N -27.632 19.291 -5.070  -2.126 -0.714 1.848  H7  D3V 71 
D3V H5  H42 H 0 1 N N N -29.784 19.498 -4.231  0.174  -0.501 1.376  H5  D3V 72 
D3V H4  H43 H 0 1 N N N -29.337 18.503 -2.804  0.202  0.316  2.974  H4  D3V 73 
D3V H11 H44 H 0 1 N N N -26.898 15.010 -6.320  -2.200 -1.319 0.119  H11 D3V 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D3V C11 C9  SING N N 1  
D3V C9  C10 SING N N 2  
D3V C9  C8  SING N N 3  
D3V C8  C7  SING N N 4  
D3V C7  C6  SING N N 5  
D3V C6  C4  SING N N 6  
D3V O   C4  SING N N 7  
D3V C13 C12 SING N N 8  
D3V C26 C25 DOUB N N 9  
D3V C15 C14 SING N N 10 
D3V C15 C16 SING N N 11 
D3V C14 C12 SING N N 12 
D3V C4  C5  SING N N 13 
D3V C4  C3  SING N N 14 
D3V C12 C3  SING N N 15 
D3V C12 C   SING N N 16 
D3V C23 C22 SING N N 17 
D3V C23 C24 SING N N 18 
D3V C25 C20 SING N N 19 
D3V C25 C24 SING N N 20 
D3V O2  C24 SING N N 21 
D3V C21 C20 SING N N 22 
D3V C21 C22 SING N N 23 
D3V C20 C19 DOUB N Z 24 
D3V C3  C2  SING N N 25 
D3V C22 O1  SING N N 26 
D3V C19 C18 SING N N 27 
D3V C16 C17 SING N N 28 
D3V C18 C17 DOUB N E 29 
D3V C17 C   SING N N 30 
D3V C   C1  SING N N 31 
D3V C2  C1  SING N N 32 
D3V C5  H9  SING N N 33 
D3V C5  H8  SING N N 34 
D3V C5  H10 SING N N 35 
D3V C6  H12 SING N N 36 
D3V C6  H13 SING N N 37 
D3V C7  H15 SING N N 38 
D3V C7  H14 SING N N 39 
D3V C8  H16 SING N N 40 
D3V C8  H17 SING N N 41 
D3V C9  H18 SING N N 42 
D3V C10 H20 SING N N 43 
D3V C10 H21 SING N N 44 
D3V C10 H19 SING N N 45 
D3V C11 H23 SING N N 46 
D3V C11 H22 SING N N 47 
D3V C11 H24 SING N N 48 
D3V C13 H26 SING N N 49 
D3V C13 H27 SING N N 50 
D3V C13 H25 SING N N 51 
D3V C14 H28 SING N N 52 
D3V C14 H29 SING N N 53 
D3V C15 H30 SING N N 54 
D3V C15 H31 SING N N 55 
D3V O2  H41 SING N N 56 
D3V C24 H3  SING N N 57 
D3V C23 H39 SING N N 58 
D3V C23 H40 SING N N 59 
D3V C22 H2  SING N N 60 
D3V O1  H38 SING N N 61 
D3V C21 H37 SING N N 62 
D3V C21 H36 SING N N 63 
D3V C26 H42 SING N N 64 
D3V C26 H43 SING N N 65 
D3V C19 H35 SING N N 66 
D3V C18 H34 SING N N 67 
D3V C   H   SING N N 68 
D3V C16 H32 SING N N 69 
D3V C16 H33 SING N N 70 
D3V C3  H1  SING N N 71 
D3V C2  H6  SING N N 72 
D3V C2  H7  SING N N 73 
D3V C1  H5  SING N N 74 
D3V C1  H4  SING N N 75 
D3V O   H11 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D3V InChI            InChI                1.03  "InChI=1S/C27H44O3/c1-18(2)8-6-15-27(5,30)25-13-12-23-20(9-7-14-26(23,25)4)10-11-21-16-22(28)17-24(29)19(21)3/h10-11,18,22-25,28-30H,3,6-9,12-17H2,1-2,4-5H3/b20-10+,21-11-/t22-,23+,24+,25+,26+,27+/m1/s1" 
D3V InChIKey         InChI                1.03  RLDKSDBKVGPMKA-YAUUYYILSA-N                                                                                                                                                                                 
D3V SMILES_CANONICAL CACTVS               3.385 "CC(C)CCC[C@](C)(O)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C"                                                                                                                             
D3V SMILES           CACTVS               3.385 "CC(C)CCC[C](C)(O)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C"                                                                                                                                       
D3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)CCC[C@@](C)([C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C)O"                                                                                                                        
D3V SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CCCC(C)(C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C)O"                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D3V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-7~{a}-methyl-1-[(2~{S})-6-methyl-2-oxidanyl-heptan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D3V "Create component" 2017-01-21 EBI  
D3V "Initial release"  2017-11-29 RCSB 
# 
