data_5BV
# 
_chem_comp.id                                    5BV 
_chem_comp.name                                  "(2R,3R)-3-(glycyloxy)-2-methylnonanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H23 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        245.315 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5BV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DIR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5BV O34 O34 O 0 1 N N N N N N -50.455 3.759  15.203 2.070  1.096  -1.065 O34 5BV 1  
5BV O35 O35 O 0 1 N N N Y N N -49.444 2.554  16.803 0.792  0.575  0.660  O35 5BV 2  
5BV O   O46 O 0 1 N N N Y N Y -48.976 -0.446 15.400 3.569  -1.954 -0.704 O46 5BV 3  
5BV N   N31 N 0 1 N N N Y Y N -47.996 5.249  15.179 2.873  3.469  -0.287 N31 5BV 4  
5BV C32 C32 C 0 1 N N N Y N N -48.537 4.689  16.400 1.967  2.746  0.614  C32 5BV 5  
5BV C33 C33 C 0 1 N N N Y N N -49.585 3.635  16.069 1.614  1.412  0.008  C33 5BV 6  
5BV C36 C36 C 0 1 N N R Y N N -50.571 1.649  16.882 0.496  -0.693 0.017  C36 5BV 7  
5BV C37 C37 C 0 1 N N N N N N -51.570 2.233  17.873 -0.904 -1.157 0.425  C37 5BV 8  
5BV C38 C38 C 0 1 N N N N N N -52.953 2.348  17.244 -1.945 -0.175 -0.116 C38 5BV 9  
5BV C39 C39 C 0 1 N N N N N N -53.992 2.428  18.361 -3.345 -0.639 0.292  C39 5BV 10 
5BV C40 C40 C 0 1 N N N N N N -53.823 3.740  19.127 -4.386 0.343  -0.249 C40 5BV 11 
5BV C41 C41 C 0 1 N N N N N N -54.659 3.700  20.405 -5.785 -0.121 0.159  C41 5BV 12 
5BV C42 C42 C 0 1 N N N N N N -54.261 4.872  21.300 -6.826 0.861  -0.382 C42 5BV 13 
5BV C43 C43 C 0 1 N N R Y N N -50.009 0.367  17.439 1.526  -1.738 0.449  C43 5BV 14 
5BV C44 C44 C 0 1 N N N N N N -51.095 -0.709 17.474 1.214  -3.073 -0.229 C44 5BV 15 
5BV C   C45 C 0 1 N N N Y N Y -48.823 -0.127 16.576 2.904  -1.280 0.048  C45 5BV 16 
5BV H   H1  H 0 1 N N N Y Y N -47.309 5.940  15.404 2.466  3.570  -1.205 H1  5BV 17 
5BV H2  H2  H 0 1 N Y N Y Y N -47.573 4.522  14.638 3.125  4.367  0.097  H2  5BV 18 
5BV H4  H4  H 0 1 N N N Y N N -47.725 4.226  16.980 2.458  2.590  1.575  H4  5BV 19 
5BV H5  H5  H 0 1 N N N Y N N -49.001 5.490  16.994 1.058  3.330  0.762  H5  5BV 20 
5BV H6  H6  H 0 1 N N N Y N N -51.040 1.485  15.901 0.536  -0.569 -1.065 H6  5BV 21 
5BV H7  H7  H 0 1 N N N N N N -51.628 1.578  18.755 -1.092 -2.149 0.014  H7  5BV 22 
5BV H8  H8  H 0 1 N N N N N N -51.230 3.233  18.181 -0.971 -1.195 1.512  H8  5BV 23 
5BV H9  H9  H 0 1 N N N N N N -53.004 3.256  16.625 -1.757 0.817  0.295  H9  5BV 24 
5BV H10 H10 H 0 1 N N N N N N -53.150 1.465  16.618 -1.878 -0.136 -1.203 H10 5BV 25 
5BV H11 H11 H 0 1 N N N N N N -55.001 2.386  17.926 -3.533 -1.631 -0.119 H11 5BV 26 
5BV H12 H12 H 0 1 N N N N N N -53.854 1.582  19.050 -3.412 -0.678 1.379  H12 5BV 27 
5BV H13 H13 H 0 1 N N N N N N -52.763 3.878  19.387 -4.198 1.335  0.162  H13 5BV 28 
5BV H14 H14 H 0 1 N N N N N N -54.158 4.577  18.497 -4.318 0.381  -1.337 H14 5BV 29 
5BV H15 H15 H 0 1 N N N N N N -55.726 3.777  20.150 -5.973 -1.113 -0.252 H15 5BV 30 
5BV H16 H16 H 0 1 N N N N N N -54.477 2.753  20.935 -5.853 -0.160 1.246  H16 5BV 31 
5BV H17 H17 H 0 1 N N N N N N -54.860 4.849  22.223 -6.638 1.852  0.029  H17 5BV 32 
5BV H18 H18 H 0 1 N N N N N N -53.194 4.794  21.554 -6.759 0.899  -1.469 H18 5BV 33 
5BV H19 H19 H 0 1 N N N N N N -54.443 5.818  20.768 -7.823 0.530  -0.092 H19 5BV 34 
5BV H20 H20 H 0 1 N N N Y N N -49.650 0.544  18.463 1.485  -1.862 1.532  H20 5BV 35 
5BV H21 H21 H 0 1 N N N N N N -51.939 -0.359 18.087 1.254  -2.949 -1.311 H21 5BV 36 
5BV H22 H22 H 0 1 N N N N N N -51.444 -0.911 16.451 1.948  -3.818 0.080  H22 5BV 37 
5BV H23 H23 H 0 1 N N N N N N -50.683 -1.631 17.909 0.216  -3.404 0.062  H23 5BV 38 
5BV OXT O1  O 0 1 N Y N Y N Y -47.617 -0.222 17.169 3.394  -0.125 0.525  O1  5BV 39 
5BV HXT H3  H 0 1 N Y N Y N Y -46.982 -0.554 16.545 4.283  0.126  0.239  H3  5BV 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5BV N   C32 SING N N 1  
5BV O34 C33 DOUB N N 2  
5BV O   C   DOUB N N 3  
5BV C33 C32 SING N N 4  
5BV C33 O35 SING N N 5  
5BV C   C43 SING N N 6  
5BV O35 C36 SING N N 7  
5BV C36 C43 SING N N 8  
5BV C36 C37 SING N N 9  
5BV C38 C37 SING N N 10 
5BV C38 C39 SING N N 11 
5BV C43 C44 SING N N 12 
5BV C39 C40 SING N N 13 
5BV C40 C41 SING N N 14 
5BV C41 C42 SING N N 15 
5BV N   H   SING N N 16 
5BV N   H2  SING N N 17 
5BV C32 H4  SING N N 18 
5BV C32 H5  SING N N 19 
5BV C36 H6  SING N N 20 
5BV C37 H7  SING N N 21 
5BV C37 H8  SING N N 22 
5BV C38 H9  SING N N 23 
5BV C38 H10 SING N N 24 
5BV C39 H11 SING N N 25 
5BV C39 H12 SING N N 26 
5BV C40 H13 SING N N 27 
5BV C40 H14 SING N N 28 
5BV C41 H15 SING N N 29 
5BV C41 H16 SING N N 30 
5BV C42 H17 SING N N 31 
5BV C42 H18 SING N N 32 
5BV C42 H19 SING N N 33 
5BV C43 H20 SING N N 34 
5BV C44 H21 SING N N 35 
5BV C44 H22 SING N N 36 
5BV C44 H23 SING N N 37 
5BV C   OXT SING N N 38 
5BV OXT HXT SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5BV SMILES           ACDLabs              12.01 "O=C(OC(C(C)C(=O)O)CCCCCC)CN"                                                                                 
5BV InChI            InChI                1.03  "InChI=1S/C12H23NO4/c1-3-4-5-6-7-10(9(2)12(15)16)17-11(14)8-13/h9-10H,3-8,13H2,1-2H3,(H,15,16)/t9-,10-/m1/s1" 
5BV InChIKey         InChI                1.03  UBRONVWKPIWEHT-NXEZZACHSA-N                                                                                   
5BV SMILES_CANONICAL CACTVS               3.385 "CCCCCC[C@@H](OC(=O)CN)[C@@H](C)C(O)=O"                                                                       
5BV SMILES           CACTVS               3.385 "CCCCCC[CH](OC(=O)CN)[CH](C)C(O)=O"                                                                           
5BV SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCC[C@H]([C@@H](C)C(=O)O)OC(=O)CN"                                                                        
5BV SMILES           "OpenEye OEToolkits" 1.9.2 "CCCCCCC(C(C)C(=O)O)OC(=O)CN"                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5BV "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R)-3-(glycyloxy)-2-methylnonanoic acid"            
5BV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3R)-3-(2-azanylethanoyloxy)-2-methyl-nonanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5BV "Create component" 2015-09-03 EBI  
5BV "Initial release"  2016-03-02 RCSB 
5BV "Modify backbone"  2023-11-03 PDBE 
5BV "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5BV 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
