data_39V
# 
_chem_comp.id                                    39V 
_chem_comp.name                                  "N-[(3-methyl-1H-inden-2-yl)carbonyl]-D-alanyl-N-[(2S,4R)-5-hydroxy-4-methyl-3-oxo-1-phenylpentan-2-yl]-L-tryptophanamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H40 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        620.737 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     39V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QLT 
_chem_comp.pdbx_subcomponent_list                "38U DAL TRP 39C" 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
39V C59 C59 C 0 1 N N N N N N 11.449 -138.624 23.895 6.688  0.208  -2.398 C59 38U 1  
39V C58 C58 C 0 1 N N N N N N 11.639 -137.126 23.965 6.313  -0.557 -1.156 C58 38U 2  
39V C57 C57 C 0 1 Y N N N N N 12.172 -136.535 25.006 7.140  -1.603 -0.539 C57 38U 3  
39V C56 C56 C 0 1 Y N N N N N 12.574 -137.006 26.168 8.387  -2.135 -0.892 C56 38U 4  
39V C55 C55 C 0 1 Y N N N N N 13.110 -136.206 27.144 8.950  -3.131 -0.123 C55 38U 5  
39V C54 C54 C 0 1 Y N N N N N 13.210 -134.881 26.869 8.291  -3.609 0.996  C54 38U 6  
39V C53 C53 C 0 1 Y N N N N N 12.762 -134.450 25.642 7.058  -3.089 1.353  C53 38U 7  
39V C52 C52 C 0 1 Y N N N N N 12.252 -135.261 24.738 6.485  -2.095 0.595  C52 38U 8  
39V C51 C51 C 0 1 N N N N N N 11.736 -135.033 23.479 5.187  -1.334 0.708  C51 38U 9  
39V C50 C50 C 0 1 N N N N N N 11.346 -136.256 23.028 5.179  -0.372 -0.457 C50 38U 10 
39V C2  C2  C 0 1 N N N N N N 10.798 -136.527 21.852 4.120  0.587  -0.775 C2  38U 11 
39V O3  O3  O 0 1 N N N N N N 10.577 -137.659 21.530 4.227  1.313  -1.746 O3  38U 12 
39V N1  N1  N 0 1 N N N N N N 10.545 -135.521 21.059 3.025  0.666  0.007  N   DAL 13 
39V C11 C11 C 0 1 N N R N N N 9.916  -135.606 19.745 1.964  1.625  -0.311 CA  DAL 14 
39V C12 C12 C 0 1 N N N N N N 8.857  -136.664 19.704 2.312  2.988  0.291  CB  DAL 15 
39V C13 C13 C 0 1 N N N N N N 10.921 -135.758 18.645 0.659  1.140  0.265  C   DAL 16 
39V O14 O14 O 0 1 N N N N N N 11.875 -135.025 18.649 0.658  0.397  1.224  O   DAL 17 
39V N15 N15 N 0 1 N N N N N N 10.688 -136.628 17.680 -0.507 1.533  -0.285 N   TRP 18 
39V C16 C16 C 0 1 N N S N N N 11.606 -136.777 16.566 -1.776 1.155  0.343  CA  TRP 19 
39V C26 C26 C 0 1 N N N N N N 10.781 -136.841 15.329 -2.216 -0.188 -0.181 C   TRP 20 
39V O27 O27 O 0 1 N N N N N N 9.663  -137.274 15.403 -1.536 -0.772 -0.998 O   TRP 21 
39V C17 C17 C 0 1 N N N N N N 12.482 -138.019 16.705 -2.840 2.205  0.013  CB  TRP 22 
39V C66 C66 C 0 1 Y N N N N N 13.526 -137.696 17.752 -2.464 3.518  0.649  CG  TRP 23 
39V C65 C65 C 0 1 Y N N N N N 13.288 -137.747 19.030 -2.845 3.958  1.858  CD1 TRP 24 
39V C67 C67 C 0 1 Y N N N N N 14.747 -137.286 17.572 -1.607 4.554  0.067  CD2 TRP 25 
39V N69 N69 N 0 1 Y N N N N N 14.382 -137.379 19.644 -2.308 5.194  2.096  NE1 TRP 26 
39V C68 C68 C 0 1 Y N N N N N 15.275 -137.094 18.744 -1.545 5.588  1.019  CE2 TRP 27 
39V C63 C63 C 0 1 Y N N N N N 15.431 -137.076 16.500 -0.918 4.678  -1.141 CE3 TRP 28 
39V C60 C60 C 0 1 Y N N N N N 16.499 -136.694 18.919 -0.793 6.725  0.743  CZ2 TRP 29 
39V C62 C62 C 0 1 Y N N N N N 16.728 -136.651 16.614 -0.185 5.804  -1.392 CZ3 TRP 30 
39V C61 C61 C 0 1 Y N N N N N 17.282 -136.457 17.846 -0.120 6.826  -0.454 CH2 TRP 31 
39V N28 N28 N 0 1 N N N N N N 11.370 -136.423 14.215 -3.365 -0.739 0.258  N22 39C 32 
39V C29 C29 C 0 1 N N S N N N 10.746 -136.323 12.907 -3.792 -2.045 -0.252 C8  39C 33 
39V C31 C31 C 0 1 N N N N N N 11.571 -137.048 11.824 -4.545 -1.858 -1.544 C9  39C 34 
39V O32 O32 O 0 1 N N N N N N 12.810 -136.687 12.047 -4.944 -0.762 -1.857 O20 39C 35 
39V C37 C37 C 0 1 N N R N N N 11.486 -138.613 11.746 -4.799 -3.038 -2.445 C10 39C 36 
39V C38 C38 C 0 1 N N N N N N 10.089 -139.091 12.005 -3.588 -3.258 -3.353 C11 39C 37 
39V C39 C39 C 0 1 N N N N N N 12.375 -139.253 12.773 -6.037 -2.768 -3.303 C12 39C 38 
39V O40 O40 O 0 1 N N N N N N 12.433 -138.472 13.944 -6.347 -3.931 -4.072 O13 39C 39 
39V C30 C30 C 0 1 N N N N N N 10.759 -134.815 12.621 -4.703 -2.720 0.776  C7  39C 40 
39V C41 C41 C 0 1 Y N N N N N 9.835  -133.996 13.250 -3.915 -3.018 2.026  C6  39C 41 
39V C42 C42 C 0 1 Y N N N N N 9.895  -132.650 12.988 -3.253 -4.225 2.155  C5  39C 42 
39V C43 C43 C 0 1 Y N N N N N 9.024  -131.766 13.564 -2.531 -4.498 3.301  C4  39C 43 
39V C44 C44 C 0 1 Y N N N N N 8.077  -132.240 14.431 -2.470 -3.564 4.319  C3  39C 44 
39V C45 C45 C 0 1 Y N N N N N 8.010  -133.579 14.706 -3.131 -2.357 4.190  C2  39C 45 
39V C46 C46 C 0 1 Y N N N N N 8.883  -134.458 14.114 -3.850 -2.082 3.041  C1  39C 46 
39V H4  H4  H 0 1 N N N N N N 11.788 -139.081 24.836 7.658  -0.136 -2.759 H4  38U 47 
39V H5  H5  H 0 1 N N N N N N 10.384 -138.852 23.740 5.935  0.043  -3.168 H5  38U 48 
39V H6  H6  H 0 1 N N N N N N 12.036 -139.029 23.058 6.744  1.272  -2.167 H6  38U 49 
39V H7  H7  H 0 1 N N N N N N 12.478 -138.064 26.360 8.905  -1.766 -1.764 H7  38U 50 
39V H8  H8  H 0 1 N N N N N N 13.438 -136.612 28.089 9.912  -3.541 -0.397 H8  38U 51 
39V H9  H9  H 0 1 N N N N N N 13.626 -134.190 27.587 8.740  -4.390 1.592  H9  38U 52 
39V H10 H10 H 0 1 N N N N N N 12.832 -133.398 25.409 6.546  -3.465 2.227  H10 38U 53 
39V H11 H11 H 0 1 N N N N N N 12.505 -134.605 22.819 4.342  -2.018 0.642  H11 38U 54 
39V H12 H12 H 0 1 N N N N N N 10.876 -134.349 23.532 5.154  -0.784 1.648  H12 38U 55 
39V H1  H1  H 0 1 N N N N N N 10.806 -134.611 21.381 2.939  0.087  0.781  H   DAL 56 
39V H13 H13 H 0 1 N N N N N N 9.406  -134.647 19.571 1.872  1.719  -1.393 HA  DAL 57 
39V H14 H14 H 0 1 N N N N N N 8.148  -136.506 20.530 3.296  3.300  -0.062 HB1 DAL 58 
39V H15 H15 H 0 1 N N N N N N 8.321  -136.609 18.745 1.567  3.722  -0.015 HB2 DAL 59 
39V H16 H16 H 0 1 N N N N N N 9.324  -137.655 19.806 2.323  2.913  1.378  HB3 DAL 60 
39V H17 H17 H 0 1 N N N N N N 9.865  -137.194 17.717 -0.506 2.065  -1.096 H   TRP 61 
39V H18 H18 H 0 1 N N N N N N 12.261 -135.895 16.512 -1.645 1.098  1.423  HA  TRP 62 
39V H2  H2  H 0 1 N N N N N N 11.875 -138.878 17.027 -2.904 2.329  -1.068 HB2 TRP 63 
39V H3  H3  H 0 1 N N N N N N 12.966 -138.251 15.745 -3.805 1.877  0.399  HB3 TRP 64 
39V H24 H24 H 0 1 N N N N N N 12.359 -138.039 19.497 -3.483 3.417  2.542  HD1 TRP 65 
39V H34 H34 H 0 1 N N N N N N 14.509 -137.326 20.634 -2.443 5.714  2.904  HE1 TRP 66 
39V H19 H19 H 0 1 N N N N N N 14.988 -137.233 15.527 -0.963 3.887  -1.875 HE3 TRP 67 
39V H23 H23 H 0 1 N N N N N N 16.887 -136.552 19.917 -0.737 7.526  1.466  HZ2 TRP 68 
39V H20 H20 H 0 1 N N N N N N 17.314 -136.469 15.726 0.348  5.899  -2.326 HZ3 TRP 69 
39V H22 H22 H 0 1 N N N N N N 18.304 -136.128 17.957 0.463  7.710  -0.667 HH2 TRP 70 
39V H25 H25 H 0 1 N N N N N N 12.330 -136.152 14.282 -3.908 -0.272 0.911  H28 39C 71 
39V H26 H26 H 0 1 N N N N N N 9.714  -136.703 12.920 -2.917 -2.670 -0.428 H29 39C 72 
39V H37 H37 H 0 1 N N N N N N 10.059 -140.189 11.944 -2.706 -3.451 -2.742 H35 39C 73 
39V H38 H38 H 0 1 N N N N N N 9.772  -138.771 13.009 -3.772 -4.112 -4.005 H36 39C 74 
39V H39 H39 H 0 1 N N N N N N 9.410  -138.664 11.252 -3.422 -2.367 -3.959 H37 39C 75 
39V H40 H40 H 0 1 N N N N N N 11.978 -140.248 13.023 -6.880 -2.524 -2.657 H38 39C 76 
39V H41 H41 H 0 1 N N N N N N 13.389 -139.356 12.358 -5.839 -1.931 -3.973 H39 39C 77 
39V H42 H42 H 0 1 N N N N N N 12.586 -137.564 13.712 -7.122 -3.831 -4.641 H40 39C 78 
39V H27 H27 H 0 1 N N N N N N 11.757 -134.445 12.899 -5.532 -2.055 1.019  H45 39C 79 
39V H28 H28 H 0 1 N N N N N N 10.611 -134.693 11.538 -5.092 -3.649 0.361  H46 39C 80 
39V H33 H33 H 0 1 N N N N N N 10.649 -132.279 12.310 -3.301 -4.954 1.360  H47 39C 81 
39V H32 H32 H 0 1 N N N N N N 9.083  -130.712 13.338 -2.014 -5.441 3.402  H48 39C 82 
39V H31 H31 H 0 1 N N N N N N 7.383  -131.557 14.898 -1.906 -3.778 5.215  H49 39C 83 
39V H30 H30 H 0 1 N N N N N N 7.264  -133.947 15.395 -3.084 -1.628 4.985  H50 39C 84 
39V H29 H29 H 0 1 N N N N N N 8.817  -135.514 14.331 -4.364 -1.137 2.939  H51 39C 85 
39V H36 H36 H 0 1 N N N N N N 11.801 -138.931 10.741 -4.965 -3.929 -1.839 H32 39C 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
39V C37 C31 SING N N 1  
39V C37 C38 SING N N 2  
39V C37 C39 SING N N 3  
39V C31 O32 DOUB N N 4  
39V C31 C29 SING N N 5  
39V C30 C29 SING N N 6  
39V C30 C41 SING N N 7  
39V C39 O40 SING N N 8  
39V C29 N28 SING N N 9  
39V C42 C41 SING Y N 10 
39V C42 C43 DOUB Y N 11 
39V C41 C46 DOUB Y N 12 
39V C43 C44 SING Y N 13 
39V C46 C45 SING Y N 14 
39V N28 C26 SING N N 15 
39V C44 C45 DOUB Y N 16 
39V C26 O27 DOUB N N 17 
39V C26 C16 SING N N 18 
39V C63 C62 DOUB Y N 19 
39V C63 C67 SING Y N 20 
39V C16 C17 SING N N 21 
39V C16 N15 SING N N 22 
39V C62 C61 SING Y N 23 
39V C17 C66 SING N N 24 
39V C67 C66 SING Y N 25 
39V C67 C68 DOUB Y N 26 
39V N15 C13 SING N N 27 
39V C66 C65 DOUB Y N 28 
39V C61 C60 DOUB Y N 29 
39V C13 O14 DOUB N N 30 
39V C13 C11 SING N N 31 
39V C68 C60 SING Y N 32 
39V C68 N69 SING Y N 33 
39V C65 N69 SING Y N 34 
39V C12 C11 SING N N 35 
39V C11 N1  SING N N 36 
39V N1  C2  SING N N 37 
39V O3  C2  DOUB N N 38 
39V C2  C50 SING N N 39 
39V C50 C51 SING N N 40 
39V C50 C58 DOUB N N 41 
39V C51 C52 SING N N 42 
39V C59 C58 SING N N 43 
39V C58 C57 SING N N 44 
39V C52 C57 DOUB Y N 45 
39V C52 C53 SING Y N 46 
39V C57 C56 SING Y N 47 
39V C53 C54 DOUB Y N 48 
39V C56 C55 DOUB Y N 49 
39V C54 C55 SING Y N 50 
39V N1  H1  SING N N 51 
39V C17 H2  SING N N 52 
39V C17 H3  SING N N 53 
39V C59 H4  SING N N 54 
39V C59 H5  SING N N 55 
39V C59 H6  SING N N 56 
39V C56 H7  SING N N 57 
39V C55 H8  SING N N 58 
39V C54 H9  SING N N 59 
39V C53 H10 SING N N 60 
39V C51 H11 SING N N 61 
39V C51 H12 SING N N 62 
39V C11 H13 SING N N 63 
39V C12 H14 SING N N 64 
39V C12 H15 SING N N 65 
39V C12 H16 SING N N 66 
39V N15 H17 SING N N 67 
39V C16 H18 SING N N 68 
39V C63 H19 SING N N 69 
39V C62 H20 SING N N 70 
39V C61 H22 SING N N 71 
39V C60 H23 SING N N 72 
39V C65 H24 SING N N 73 
39V N28 H25 SING N N 74 
39V C29 H26 SING N N 75 
39V C30 H27 SING N N 76 
39V C30 H28 SING N N 77 
39V C46 H29 SING N N 78 
39V C45 H30 SING N N 79 
39V C44 H31 SING N N 80 
39V C43 H32 SING N N 81 
39V C42 H33 SING N N 82 
39V C37 H36 SING N N 83 
39V C38 H37 SING N N 84 
39V C38 H38 SING N N 85 
39V C38 H39 SING N N 86 
39V C39 H40 SING N N 87 
39V C39 H41 SING N N 88 
39V O40 H42 SING N N 89 
39V N69 H34 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
39V SMILES           ACDLabs              12.01 "O=C(C(C)CO)C(NC(=O)C(NC(=O)C(NC(=O)C2=C(c1ccccc1C2)C)C)Cc4c3ccccc3nc4)Cc5ccccc5"                                                                                                                                                                                      
39V InChI            InChI                1.03  "InChI=1S/C37H40N4O5/c1-22(21-42)34(43)32(17-25-11-5-4-6-12-25)40-37(46)33(19-27-20-38-31-16-10-9-15-29(27)31)41-35(44)24(3)39-36(45)30-18-26-13-7-8-14-28(26)23(30)2/h4-16,20,22,24,32-33,38,42H,17-19,21H2,1-3H3,(H,39,45)(H,40,46)(H,41,44)/t22-,24-,32+,33+/m1/s1" 
39V InChIKey         InChI                1.03  GCKVAOQLUKFJOV-BVZMXYCPSA-N                                                                                                                                                                                                                                            
39V SMILES_CANONICAL CACTVS               3.385 "C[C@H](CO)C(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@@H](C)NC(=O)C4=C(C)c5ccccc5C4"                                                                                                                                                                  
39V SMILES           CACTVS               3.385 "C[CH](CO)C(=O)[CH](Cc1ccccc1)NC(=O)[CH](Cc2c[nH]c3ccccc23)NC(=O)[CH](C)NC(=O)C4=C(C)c5ccccc5C4"                                                                                                                                                                       
39V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C(Cc2c1cccc2)C(=O)N[C@H](C)C(=O)N[C@@H](Cc3c[nH]c4c3cccc4)C(=O)N[C@@H](Cc5ccccc5)C(=O)[C@H](C)CO"                                                                                                                                                                 
39V SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=C(Cc2c1cccc2)C(=O)NC(C)C(=O)NC(Cc3c[nH]c4c3cccc4)C(=O)NC(Cc5ccccc5)C(=O)C(C)CO"                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
39V "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(3-methyl-1H-inden-2-yl)carbonyl]-D-alanyl-N-[(2S,4R)-5-hydroxy-4-methyl-3-oxo-1-phenylpentan-2-yl]-L-tryptophanamide"                                                                                        
39V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2R)-1-[[(2S)-3-(1H-indol-3-yl)-1-[[(2S,4R)-4-methyl-5-oxidanyl-3-oxidanylidene-1-phenyl-pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-3-methyl-1H-indene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
39V "Create component" 2014-07-13 PDBJ 
39V "Initial release"  2014-07-23 RCSB 
39V "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 39V THR None "Covalent chemical modification" "Amino-acid backbone"   N-terminal     C37 N   ? ? 
2 39V THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C31 OG1 ? ? 
# 
