data_RBU
# 
_chem_comp.id                                    RBU 
_chem_comp.name                                  
;RUTHEMIUM BIS(2,2'-BIPYRIDINE)-2-IMIDAZOLE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H20 N6 Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2023-09-23 
_chem_comp.pdbx_ambiguous_flag                   Y 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.515 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RBU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1BEX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RBU C1  C1  C  0 1 Y N N 9.702  13.522 26.709 1.181  -2.638 0.891  C1  RBU 1  
RBU C2  C2  C  0 1 Y N N 8.559  14.088 27.246 2.170  -3.401 1.485  C2  RBU 2  
RBU C3  C3  C  0 1 Y N N 7.458  14.307 26.428 3.364  -2.798 1.855  C3  RBU 3  
RBU C4  C4  C  0 1 Y N N 7.490  13.960 25.087 3.523  -1.444 1.615  C4  RBU 4  
RBU C5  C5  C  0 1 Y N N 8.644  13.400 24.572 2.486  -0.738 1.008  C5  RBU 5  
RBU RU  RU  RU 0 0 N N N 11.345 12.339 24.416 -0.055 -0.333 -0.157 RU  RBU 6  
RBU N1  N1  N  0 1 Y N N 9.740  13.178 25.391 1.358  -1.351 0.674  N1  RBU 7  
RBU N2  N2  N  0 1 Y N N 9.973  12.479 22.836 1.986  1.272  -0.265 N2  RBU 8  
RBU N3  N3  N  0 1 Y N N 12.153 14.171 23.963 -1.757 -1.150 0.243  N3  RBU 9  
RBU N4  N4  N  0 1 Y N N 12.622 12.608 26.039 -1.650 1.674  -0.059 N4  RBU 10 
RBU N5  N5  N  0 1 Y N N 10.309 10.573 24.942 0.211  -0.304 -2.068 N5  RBU 11 
RBU N6  N6  N  0 1 Y N N 9.254  9.007  26.101 0.793  -0.879 -4.065 N6  RBU 12 
RBU C6  C6  C  0 1 Y N N 8.763  13.021 23.218 2.641  0.714  0.744  C6  RBU 13 
RBU C7  C7  C  0 1 Y N N 7.739  13.196 22.286 3.478  1.478  1.554  C7  RBU 14 
RBU C8  C8  C  0 1 Y N N 7.952  12.798 20.979 3.613  2.831  1.295  C8  RBU 15 
RBU C9  C9  C  0 1 Y N N 9.172  12.244 20.606 2.905  3.376  0.233  C9  RBU 16 
RBU C10 C10 C  0 1 Y N N 10.178 12.085 21.552 2.092  2.558  -0.531 C10 RBU 17 
RBU C11 C11 C  0 1 Y N N 11.846 14.920 22.875 -1.874 -2.460 0.171  C11 RBU 18 
RBU C12 C12 C  0 1 Y N N 12.450 16.152 22.690 -3.077 -3.083 0.449  C12 RBU 19 
RBU C13 C13 C  0 1 Y N N 13.369 16.612 23.618 -4.174 -2.313 0.810  C13 RBU 20 
RBU C14 C14 C  0 1 Y N N 13.680 15.850 24.727 -4.022 -0.939 0.879  C14 RBU 21 
RBU C15 C15 C  0 1 Y N N 13.060 14.619 24.890 -2.780 -0.379 0.590  C15 RBU 22 
RBU C16 C16 C  0 1 Y N N 13.306 13.789 25.995 -2.601 1.092  0.659  C16 RBU 23 
RBU C17 C17 C  0 1 Y N N 14.188 14.124 27.010 -3.431 1.851  1.482  C17 RBU 24 
RBU C18 C18 C  0 1 Y N N 14.359 13.252 28.073 -3.252 3.222  1.536  C18 RBU 25 
RBU C19 C19 C  0 1 Y N N 13.661 12.059 28.117 -2.248 3.790  0.765  C19 RBU 26 
RBU C20 C20 C  0 1 Y N N 12.790 11.747 27.086 -1.461 2.977  -0.030 C20 RBU 27 
RBU C21 C21 C  0 1 Y N N 9.885  10.194 26.129 0.780  -1.248 -2.766 C21 RBU 28 
RBU C22 C22 C  0 1 Y N N 9.272  8.583  24.825 0.190  0.347  -4.143 C22 RBU 29 
RBU C23 C23 C  0 1 Y N N 9.925  9.544  24.101 -0.165 0.688  -2.889 C23 RBU 30 
RBU H1  H1  H  0 1 N N N 10.565 13.353 27.336 0.251  -3.104 0.602  H1  RBU 31 
RBU H2  H2  H  0 1 N N N 8.523  14.357 28.291 2.015  -4.455 1.659  H2  RBU 32 
RBU H3  H3  H  0 1 N N N 6.566  14.753 26.842 4.151  -3.373 2.320  H3  RBU 33 
RBU H4  H4  H  0 1 N N N 6.629  14.124 24.456 4.439  -0.943 1.890  H4  RBU 34 
RBU HN6 HN6 H  0 1 N N N 8.848  8.530  26.881 1.157  -1.390 -4.805 HN6 RBU 35 
RBU H7  H7  H  0 1 N N N 6.797  13.634 22.580 4.014  1.021  2.373  H7  RBU 36 
RBU H8  H8  H  0 1 N N N 7.168  12.918 20.245 4.254  3.449  1.906  H8  RBU 37 
RBU H9  H9  H  0 1 N N N 9.337  11.938 19.584 2.988  4.428  0.005  H9  RBU 38 
RBU H10 H10 H  0 1 N N N 11.123 11.648 21.266 1.540  2.978  -1.358 H10 RBU 39 
RBU H11 H11 H  0 1 N N N 11.130 14.556 22.153 -1.018 -3.056 -0.111 H11 RBU 40 
RBU H12 H12 H  0 1 N N N 12.205 16.752 21.826 -3.162 -4.157 0.386  H12 RBU 41 
RBU H13 H13 H  0 1 N N N 13.845 17.571 23.474 -5.124 -2.776 1.032  H13 RBU 42 
RBU H14 H14 H  0 1 N N N 14.394 16.206 25.455 -4.855 -0.309 1.157  H14 RBU 43 
RBU H17 H17 H  0 1 N N N 14.736 15.054 26.973 -4.203 1.375  2.069  H17 RBU 44 
RBU H18 H18 H  0 1 N N N 15.041 13.505 28.871 -3.880 3.837  2.165  H18 RBU 45 
RBU H19 H19 H  0 1 N N N 13.793 11.379 28.945 -2.083 4.858  0.785  H19 RBU 46 
RBU H20 H20 H  0 1 N N N 12.241 10.818 27.110 -0.679 3.416  -0.632 H20 RBU 47 
RBU H21 H21 H  0 1 N N N 10.028 10.774 27.029 1.181  -2.170 -2.369 H21 RBU 48 
RBU H22 H22 H  0 1 N N N 8.853  7.663  24.445 0.030  0.930  -5.038 H22 RBU 49 
RBU H23 H23 H  0 1 N N N 10.111 9.505  23.038 -0.664 1.600  -2.597 H23 RBU 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RBU C1  C2  DOUB Y N 1  
RBU C1  N1  SING Y N 2  
RBU C1  H1  SING N N 3  
RBU C2  C3  SING Y N 4  
RBU C2  H2  SING N N 5  
RBU C3  C4  DOUB Y N 6  
RBU C3  H3  SING N N 7  
RBU C4  C5  SING Y N 8  
RBU C4  H4  SING N N 9  
RBU C5  N1  DOUB Y N 10 
RBU C5  C6  SING N N 11 
RBU RU  N1  SING N N 12 
RBU RU  N3  SING N N 13 
RBU RU  N5  SING N N 14 
RBU N2  C6  DOUB Y N 15 
RBU N2  C10 SING Y N 16 
RBU N3  C11 SING Y N 17 
RBU N3  C15 DOUB Y N 18 
RBU N4  C16 DOUB Y N 19 
RBU N4  C20 SING Y N 20 
RBU N5  C21 DOUB Y N 21 
RBU N5  C23 SING Y N 22 
RBU N6  C21 SING Y N 23 
RBU N6  C22 SING Y N 24 
RBU N6  HN6 SING N N 25 
RBU C6  C7  SING Y N 26 
RBU C7  C8  DOUB Y N 27 
RBU C7  H7  SING N N 28 
RBU C8  C9  SING Y N 29 
RBU C8  H8  SING N N 30 
RBU C9  C10 DOUB Y N 31 
RBU C9  H9  SING N N 32 
RBU C10 H10 SING N N 33 
RBU C11 C12 DOUB Y N 34 
RBU C11 H11 SING N N 35 
RBU C12 C13 SING Y N 36 
RBU C12 H12 SING N N 37 
RBU C13 C14 DOUB Y N 38 
RBU C13 H13 SING N N 39 
RBU C14 C15 SING Y N 40 
RBU C14 H14 SING N N 41 
RBU C15 C16 SING N N 42 
RBU C16 C17 SING Y N 43 
RBU C17 C18 DOUB Y N 44 
RBU C17 H17 SING N N 45 
RBU C18 C19 SING Y N 46 
RBU C18 H18 SING N N 47 
RBU C19 C20 DOUB Y N 48 
RBU C19 H19 SING N N 49 
RBU C20 H20 SING N N 50 
RBU C21 H21 SING N N 51 
RBU C22 C23 DOUB Y N 52 
RBU C22 H22 SING N N 53 
RBU C23 H23 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RBU InChI            InChI                1.06  "InChI=1S/2C10H8N2.C3H4N2.Ru/c2*1-3-7-11-9(5-1)10-6-2-4-8-12-10;1-2-5-3-4-1;/h2*1-8H;1-3H,(H,4,5);" 
RBU InChIKey         InChI                1.06  LVAGRRXZENULKW-UHFFFAOYSA-N                                                                         
RBU SMILES_CANONICAL CACTVS               3.385 "[Ru].[nH]1ccnc1.c2ccc(nc2)c3ccccn3.c4ccc(nc4)c5ccccn5"                                             
RBU SMILES           CACTVS               3.385 "[Ru].[nH]1ccnc1.c2ccc(nc2)c3ccccn3.c4ccc(nc4)c5ccccn5"                                             
RBU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)C2=[N](C=CC=C2)[Ru]([N]3=CNC=C3)[N]4=C(C=CC=C4)c5ccccn5"                                 
RBU SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)C2=[N](C=CC=C2)[Ru]([N]3=CNC=C3)[N]4=C(C=CC=C4)c5ccccn5"                                 
# 
_pdbx_chem_comp_identifier.comp_id           RBU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1~{H}-imidazol-3-yl-bis(2-pyridin-2-ylpyridin-1-yl)ruthenium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RBU "Create component"  1999-07-08 RCSB 
RBU "Modify descriptor" 2023-09-23 RCSB 
# 
