data_PSU
# 
_chem_comp.id                                    PSU 
_chem_comp.name                                  "PSEUDOURIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               U 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.181 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     PSU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1EVV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PSU N1     N1   N 0 1 N N N 45.951 -8.341  4.943  -0.870 1.101  4.517  N1     PSU 1  
PSU C2     C2   C 0 1 N N N 46.362 -7.425  4.009  -1.587 -0.035 4.567  C2     PSU 2  
PSU N3     N3   N 0 1 N N N 47.688 -7.503  3.694  -1.510 -0.946 3.580  N3     PSU 3  
PSU C4     C4   C 0 1 N N N 48.598 -8.394  4.227  -0.710 -0.728 2.516  C4     PSU 4  
PSU C5     C5   C 0 1 N N N 48.053 -9.304  5.200  0.053  0.461  2.453  C5     PSU 5  
PSU C6     C6   C 0 1 N N N 46.756 -9.231  5.507  -0.043 1.357  3.458  C6     PSU 6  
PSU O2     O2   O 0 1 N N N 45.614 -6.612  3.505  -2.316 -0.243 5.518  O2     PSU 7  
PSU O4     O4   O 0 1 N N N 49.766 -8.353  3.851  -0.639 -1.552 1.621  O4     PSU 8  
PSU "C1'"  C1*  C 0 1 N N S 49.020 -10.144 6.016  0.959  0.726  1.278  "C1'"  PSU 9  
PSU "C2'"  C2*  C 0 1 N N R 49.879 -9.330  6.985  2.031  -0.380 1.165  "C2'"  PSU 10 
PSU "O2'"  O2*  O 0 1 N N N 51.185 -9.867  7.050  3.261  0.048  1.751  "O2'"  PSU 11 
PSU "C3'"  C3*  C 0 1 N N S 49.121 -9.511  8.293  2.199  -0.585 -0.357 "C3'"  PSU 12 
PSU "C4'"  C4*  C 0 1 N N R 48.635 -10.947 8.182  1.208  0.418  -0.986 "C4'"  PSU 13 
PSU "O3'"  O3*  O 0 1 N N N 50.001 -9.367  9.401  3.537  -0.286 -0.758 "O3'"  PSU 14 
PSU "O4'"  O4*  O 0 1 N N N 48.275 -11.076 6.785  0.217  0.649  0.042  "O4'"  PSU 15 
PSU "C5'"  C5*  C 0 1 N N N 47.442 -11.306 9.040  0.553  -0.178 -2.233 "C5'"  PSU 16 
PSU "O5'"  O5*  O 0 1 N N N 46.269 -10.652 8.557  -0.409 0.741  -2.751 "O5'"  PSU 17 
PSU P      P    P 0 1 N N N 44.869 -10.863 9.283  -1.056 0.052  -4.055 P      PSU 18 
PSU OP1    O1P  O 0 1 N N N 43.953 -9.768  8.868  -1.701 -1.222 -3.670 OP1    PSU 19 
PSU OP2    O2P  O 0 1 N N N 45.141 -11.096 10.723 -2.156 1.039  -4.694 OP2    PSU 20 
PSU OP3    O3P  O 0 1 N Y N 44.318 -12.244 8.663  0.099  -0.236 -5.138 OP3    PSU 21 
PSU HN1    HN1  H 0 1 N N N 45.171 -8.856  4.535  -0.940 1.745  5.239  HN1    PSU 22 
PSU HN3    HN3  H 0 1 N N N 48.028 -6.837  2.999  -2.033 -1.761 3.631  HN3    PSU 23 
PSU H6     H6   H 0 1 N N N 46.335 -9.928  6.250  0.529  2.273  3.426  H6     PSU 24 
PSU "H1'"  H1*  H 0 1 N N N 49.706 -10.634 5.286  1.432  1.703  1.377  "H1'"  PSU 25 
PSU "H2'"  H2*  H 0 1 N N N 50.019 -8.260  6.703  1.683  -1.298 1.638  "H2'"  PSU 26 
PSU "HO2'" *HO2 H 0 0 N N N 51.718 -9.361  7.651  3.905  -0.656 1.596  "HO2'" PSU 27 
PSU "H3'"  H3*  H 0 1 N N N 48.304 -8.768  8.449  1.936  -1.606 -0.635 "H3'"  PSU 28 
PSU "H4'"  H4*  H 0 1 N N N 49.434 -11.635 8.543  1.720  1.348  -1.235 "H4'"  PSU 29 
PSU "HO3'" *HO3 H 0 0 N Y N 49.528 -9.479  10.217 4.111  -0.924 -0.312 "HO3'" PSU 30 
PSU "H5'"  1H5* H 0 1 N N N 47.301 -12.409 9.115  1.315  -0.369 -2.987 "H5'"  PSU 31 
PSU "H5''" 2H5* H 0 0 N N N 47.625 -11.088 10.118 0.058  -1.113 -1.971 "H5''" PSU 32 
PSU HOP2   2HOP H 0 0 N N N 44.305 -11.222 11.156 -2.517 0.589  -5.470 HOP2   PSU 33 
PSU HOP3   3HOP H 0 0 N N N 43.482 -12.370 9.096  0.493  0.617  -5.361 HOP3   PSU 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PSU N1    C2     SING N N 1  
PSU N1    C6     SING N N 2  
PSU N1    HN1    SING N N 3  
PSU C2    N3     SING N N 4  
PSU C2    O2     DOUB N N 5  
PSU N3    C4     SING N N 6  
PSU N3    HN3    SING N N 7  
PSU C4    C5     SING N N 8  
PSU C4    O4     DOUB N N 9  
PSU C5    C6     DOUB N N 10 
PSU C5    "C1'"  SING N N 11 
PSU C6    H6     SING N N 12 
PSU "C1'" "C2'"  SING N N 13 
PSU "C1'" "O4'"  SING N N 14 
PSU "C1'" "H1'"  SING N N 15 
PSU "C2'" "O2'"  SING N N 16 
PSU "C2'" "C3'"  SING N N 17 
PSU "C2'" "H2'"  SING N N 18 
PSU "O2'" "HO2'" SING N N 19 
PSU "C3'" "C4'"  SING N N 20 
PSU "C3'" "O3'"  SING N N 21 
PSU "C3'" "H3'"  SING N N 22 
PSU "C4'" "O4'"  SING N N 23 
PSU "C4'" "C5'"  SING N N 24 
PSU "C4'" "H4'"  SING N N 25 
PSU "O3'" "HO3'" SING N N 26 
PSU "C5'" "O5'"  SING N N 27 
PSU "C5'" "H5'"  SING N N 28 
PSU "C5'" "H5''" SING N N 29 
PSU "O5'" P      SING N N 30 
PSU P     OP1    DOUB N N 31 
PSU P     OP2    SING N N 32 
PSU P     OP3    SING N N 33 
PSU OP2   HOP2   SING N N 34 
PSU OP3   HOP3   SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PSU SMILES           ACDLabs              10.04 "O=P(OCC2OC(C1=CNC(=O)NC1=O)C(O)C2O)(O)O"                                                                                                           
PSU SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O"                                                                                      
PSU SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O"                                                                                             
PSU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                   
PSU SMILES           "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1)C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                     
PSU InChI            InChI                1.03  "InChI=1S/C9H13N2O9P/c12-5-4(2-19-21(16,17)18)20-7(6(5)13)3-1-10-9(15)11-8(3)14/h1,4-7,12-13H,2H2,(H2,16,17,18)(H2,10,11,14,15)/t4-,5-,6-,7+/m1/s1" 
PSU InChIKey         InChI                1.03  MOBMOJGXNHLLIR-GBNDHIKLSA-N                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PSU "SYSTEMATIC NAME" ACDLabs              10.04 "(1S)-1,4-anhydro-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol"              
PSU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-5-(2,4-dioxo-1H-pyrimidin-5-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PSU "Create component"  1999-07-08 RCSB 
PSU "Modify descriptor" 2011-06-04 RCSB 
# 
