data_P4U
#

_chem_comp.id                                   P4U
_chem_comp.name                                 "4-propyl, uridine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H19 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              U
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       366.261
_chem_comp.one_letter_code                      U
_chem_comp.three_letter_code                    P4U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P4U  "C1'"  C1   C  0  1  N  N  R  216.423  321.536  231.669  -0.049  -1.828   0.596  "C1'"  P4U   1  
P4U  C2     C2   C  0  1  N  N  N  215.802  322.267  233.984  -1.675  -0.210  -0.214  C2     P4U   2  
P4U  "C2'"  C3   C  0  1  N  N  R  215.168  321.956  230.902   0.242  -2.469  -0.785  "C2'"  P4U   3  
P4U  "C3'"  C4   C  0  1  N  N  S  215.764  322.900  229.878   1.790  -2.447  -0.832  "C3'"  P4U   4  
P4U  C4     C5   C  0  1  N  N  N  216.957  324.003  235.029  -3.831  -0.075   0.603  C4     P4U   5  
P4U  "C4'"  C6   C  0  1  N  N  R  217.046  322.197  229.518   2.184  -1.366   0.192  "C4'"  P4U   6  
P4U  C5     C7   C  0  1  N  N  N  217.763  324.135  233.936  -3.563  -1.143   1.480  C5     P4U   7  
P4U  "C5'"  C8   C  0  1  N  N  N  218.082  323.071  228.881   3.004  -0.272  -0.495  "C5'"  P4U   8  
P4U  C6     C9   C  0  1  N  N  N  217.577  323.309  232.862  -2.330  -1.707   1.472  C6     P4U   9  
P4U  N1     N1   N  0  1  N  N  N  216.624  322.386  232.858  -1.386  -1.229   0.615  N1     P4U  10  
P4U  N3     N2   N  0  1  N  N  N  215.999  323.070  235.036  -2.882   0.356  -0.213  N3     P4U  11  
P4U  O2     O1   O  0  1  N  N  N  214.894  321.421  234.056  -0.818   0.206  -0.976  O2     P4U  12  
P4U  "O2'"  O2   O  0  1  N  N  N  214.615  320.808  230.283  -0.252  -3.809  -0.840  "O2'"  P4U  13  
P4U  "O3'"  O3   O  0  1  N  N  N  214.938  323.174  228.774   2.319  -3.719  -0.451  "O3'"  P4U  14  
P4U  O4     O4   O  0  1  N  N  N  217.160  324.819  236.109  -5.050   0.507   0.594  O4     P4U  15  
P4U  "O4'"  O5   O  0  1  N  N  N  217.520  321.707  230.796   0.967  -0.809   0.720  "O4'"  P4U  16  
P4U  "O5'"  O6   O  0  1  N  N  N  219.348  322.877  229.461   3.463   0.664   0.482  "O5'"  P4U  17  
P4U  OP1    O7   O  0  1  N  N  N  219.777  324.890  230.939   5.565   1.514  -0.627  OP1    P4U  18  
P4U  OP2    O8   O  0  1  N  N  N  220.624  324.810  228.510   3.500   2.955  -0.808  OP2    P4U  19  
P4U  P      P1   P  0  1  N  N  N  220.305  324.098  229.786   4.358   1.950   0.112  P      P4U  20  
P4U  C41    C10  C  0  1  N  N  N  217.755  326.108  235.950  -5.248   1.584  -0.323  C41    P4U  21  
P4U  C42    C11  C  0  1  N  N  N  218.185  326.678  237.289  -6.678   2.112  -0.189  C42    P4U  22  
P4U  C43    C12  C  0  1  N  N  N  218.948  325.651  238.081  -6.890   3.266  -1.171  C43    P4U  23  
P4U  H1     H1   H  0  1  N  N  N  216.325  320.483  231.973   0.051  -2.567   1.391  H1     P4U  24  
P4U  H2     H2   H  0  1  N  N  N  214.455  322.475  231.560  -0.180  -1.867  -1.589  H2     P4U  25  
P4U  H3     H3   H  0  1  N  N  N  216.020  323.840  230.389   2.137  -2.174  -1.829  H3     P4U  26  
P4U  H4     H4   H  0  1  N  N  N  216.821  321.352  228.850   2.764  -1.814   0.999  H4     P4U  27  
P4U  H5     H5   H  0  1  N  N  N  218.540  324.885  233.919  -4.327  -1.506   2.151  H5     P4U  28  
P4U  H6     H6   H  0  1  N  N  N  217.788  324.124  229.008   3.860  -0.722  -0.998  H6     P4U  29  
P4U  H7     H7   H  0  1  N  N  N  218.140  322.833  227.809   2.381   0.242  -1.227  H7     P4U  30  
P4U  H8     H8   H  0  1  N  N  N  218.219  323.410  231.999  -2.101  -2.527   2.136  H8     P4U  31  
P4U  H9     H9   H  0  1  N  N  N  214.249  320.235  230.947  -0.093  -4.252  -1.684  H9     P4U  32  
P4U  H10    H10  H  0  1  N  N  N  214.150  323.616  229.069   2.054  -4.445  -1.031  H10    P4U  33  
P4U  H12    H12  H  0  1  N  N  N  220.436  325.736  228.608   2.693   3.281  -0.386  H12    P4U  34  
P4U  H13    H13  H  0  1  N  N  N  218.636  326.019  235.297  -4.543   2.385  -0.100  H13    P4U  35  
P4U  H14    H14  H  0  1  N  N  N  217.023  326.787  235.488  -5.086   1.230  -1.341  H14    P4U  36  
P4U  H15    H15  H  0  1  N  N  N  218.828  327.554  237.119  -7.383   1.311  -0.412  H15    P4U  37  
P4U  H16    H16  H  0  1  N  N  N  217.293  326.982  237.856  -6.841   2.466   0.829  H16    P4U  38  
P4U  H17    H17  H  0  1  N  N  N  219.251  326.082  239.047  -6.185   4.067  -0.948  H17    P4U  39  
P4U  H18    H18  H  0  1  N  N  N  218.308  324.773  238.256  -6.728   2.911  -2.189  H18    P4U  40  
P4U  H19    H19  H  0  1  N  N  N  219.843  325.346  237.519  -7.909   3.641  -1.076  H19    P4U  41  
P4U  OP3    OP3  O  0  1  N  Y  N  221.625  323.373  230.314   4.800   2.704   1.464  OP3    P4U  42  
P4U  H11    H11  H  0  1  N  N  N  221.772  323.605  231.223   5.344   3.490   1.316  H11    P4U  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P4U  OP2    P      SING  N  N   1  
P4U  "O3'"  "C3'"  SING  N  N   2  
P4U  "C5'"  "O5'"  SING  N  N   3  
P4U  "C5'"  "C4'"  SING  N  N   4  
P4U  "O5'"  P      SING  N  N   5  
P4U  "C4'"  "C3'"  SING  N  N   6  
P4U  "C4'"  "O4'"  SING  N  N   7  
P4U  P      OP1    DOUB  N  N   8  
P4U  "C3'"  "C2'"  SING  N  N   9  
P4U  "O2'"  "C2'"  SING  N  N  10  
P4U  "O4'"  "C1'"  SING  N  N  11  
P4U  "C2'"  "C1'"  SING  N  N  12  
P4U  "C1'"  N1     SING  N  N  13  
P4U  N1     C6     SING  N  N  14  
P4U  N1     C2     SING  N  N  15  
P4U  C6     C5     DOUB  N  N  16  
P4U  C5     C4     SING  N  N  17  
P4U  C2     O2     DOUB  N  N  18  
P4U  C2     N3     SING  N  N  19  
P4U  C4     N3     DOUB  N  N  20  
P4U  C4     O4     SING  N  N  21  
P4U  C41    O4     SING  N  N  22  
P4U  C41    C42    SING  N  N  23  
P4U  C42    C43    SING  N  N  24  
P4U  "C1'"  H1     SING  N  N  25  
P4U  "C2'"  H2     SING  N  N  26  
P4U  "C3'"  H3     SING  N  N  27  
P4U  "C4'"  H4     SING  N  N  28  
P4U  C5     H5     SING  N  N  29  
P4U  "C5'"  H6     SING  N  N  30  
P4U  "C5'"  H7     SING  N  N  31  
P4U  C6     H8     SING  N  N  32  
P4U  "O2'"  H9     SING  N  N  33  
P4U  "O3'"  H10    SING  N  N  34  
P4U  OP2    H12    SING  N  N  35  
P4U  C41    H13    SING  N  N  36  
P4U  C41    H14    SING  N  N  37  
P4U  C42    H15    SING  N  N  38  
P4U  C42    H16    SING  N  N  39  
P4U  C43    H17    SING  N  N  40  
P4U  C43    H18    SING  N  N  41  
P4U  C43    H19    SING  N  N  42  
P4U  P      OP3    SING  N  N  43  
P4U  OP3    H11    SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P4U  InChI             InChI                 1.03   "InChI=1S/C12H19N2O9P/c1-2-5-21-8-3-4-14(12(17)13-8)11-10(16)9(15)7(23-11)6-22-24(18,19)20/h3-4,7,9-11,15-16H,2,5-6H2,1H3,(H2,18,19,20)/t7-,9-,10-,11-/m1/s1"  
P4U  InChIKey          InChI                 1.03   YIPJYDZHQZNRLV-QCNRFFRDSA-N  
P4U  SMILES_CANONICAL  CACTVS                3.385  "CCCOC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
P4U  SMILES            CACTVS                3.385  "CCCOC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
P4U  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCOC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
P4U  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCOC1=NC(=O)N(C=C1)C2C(C(C(O2)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          P4U
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(2-oxidanylidene-4-propoxy-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P4U  "Create component"        2017-09-25  EBI   
P4U  "Initial release"         2018-01-24  RCSB  
P4U  "Modify one letter code"  2019-04-29  EBI   
##
