data_P2U
# 
_chem_comp.id                                    P2U 
_chem_comp.name                                  "2'-DEOXY-PSEUDOURIDINE-5'MONOPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-03-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        308.182 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     P2U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1EMH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P2U N1     N1   N 0 1 N N N 20.024 3.141 7.922  -0.531 1.102  4.630  N1     P2U 1  
P2U C2     C2   C 0 1 N N N 19.663 2.852 6.608  -1.245 -0.035 4.706  C2     P2U 2  
P2U N3     N3   N 0 1 N N N 18.303 2.620 6.394  -1.203 -0.946 3.716  N3     P2U 3  
P2U C4     C4   C 0 1 N N N 17.319 2.642 7.353  -0.443 -0.728 2.624  C4     P2U 4  
P2U C5     C5   C 0 1 N N N 17.768 2.944 8.637  0.317  0.462  2.534  C5     P2U 5  
P2U C6     C6   C 0 1 N N N 19.097 3.191 8.875  0.256  1.359  3.542  C6     P2U 6  
P2U O2     O2   O 0 1 N N N 20.437 2.790 5.658  -1.939 -0.243 5.683  O2     P2U 7  
P2U O4     O4   O 0 1 N N N 16.149 2.436 7.079  -0.404 -1.551 1.728  O4     P2U 8  
P2U "C1'"  C1*  C 0 1 N N R 16.948 3.993 9.433  1.180  0.727  1.327  "C1'"  P2U 9  
P2U "C2'"  C2*  C 0 1 N N N 15.578 3.417 9.876  2.247  -0.378 1.175  "C2'"  P2U 10 
P2U "C3'"  C3*  C 0 1 N N S 15.511 3.494 11.397 2.360  -0.584 -0.351 "C3'"  P2U 11 
P2U "C4'"  C4*  C 0 1 N N R 16.899 3.927 11.820 1.347  0.419  -0.944 "C4'"  P2U 12 
P2U "O3'"  O3*  O 0 1 N N N 14.450 4.353 11.819 3.683  -0.284 -0.800 "O3'"  P2U 13 
P2U "O4'"  O4*  O 0 1 N N N 17.652 4.286 10.635 0.393  0.650  0.118  "O4'"  P2U 14 
P2U "C5'"  C5*  C 0 1 N N N 17.438 2.788 12.593 0.647  -0.177 -2.167 "C5'"  P2U 15 
P2U "O5'"  O5*  O 0 1 N N N 18.411 3.275 13.263 -0.333 0.741  -2.650 "O5'"  P2U 16 
P2U P      P    P 0 1 N N N 19.339 2.338 14.133 -1.026 0.052  -3.930 P      P2U 17 
P2U OP1    O1P  O 0 1 N N N 20.521 3.168 14.467 -1.657 -1.223 -3.522 OP1    P2U 18 
P2U OP2    O2P  O 0 1 N N N 19.520 1.032 13.467 -2.149 1.038  -4.529 OP2    P2U 19 
P2U OP3    O3P  O 0 1 N Y N 18.481 2.081 15.459 0.089  -0.236 -5.054 OP3    P2U 20 
P2U HN1    HN1  H 0 1 N N N 20.538 4.021 7.927  -0.575 1.746  5.354  HN1    P2U 21 
P2U HN3    HN3  H 0 1 N N N 17.998 2.414 5.442  -1.724 -1.761 3.787  HN3    P2U 22 
P2U H6     H6   H 0 1 N N N 19.440 3.444 9.892  0.827  2.274  3.489  H6     P2U 23 
P2U "H1'"  H1*  H 0 1 N N N 16.800 4.884 8.779  1.655  1.705  1.409  "H1'"  P2U 24 
P2U "H2'"  1H2* H 0 1 N N N 14.715 3.919 9.378  1.917  -1.297 1.661  "H2'"  P2U 25 
P2U "H2''" 2H2* H 0 0 N N N 15.394 2.388 9.486  3.201  -0.048 1.588  "H2''" P2U 26 
P2U "H3'"  H3*  H 0 1 N N N 15.258 2.524 11.887 2.088  -1.604 -0.620 "H3'"  P2U 27 
P2U "H4'"  H4*  H 0 1 N N N 16.935 4.835 12.465 1.849  1.349  -1.212 "H4'"  P2U 28 
P2U "HO3'" H3T  H 0 0 N Y N 14.408 4.401 12.766 4.273  -0.922 -0.376 "HO3'" P2U 29 
P2U "H5'"  1H5* H 0 1 N N N 16.676 2.264 13.217 1.382  -0.369 -2.948 "H5'"  P2U 30 
P2U "H5''" 2H5* H 0 0 N N N 17.716 1.908 11.967 0.162  -1.112 -1.887 "H5''" P2U 31 
P2U HOP2   2HOP H 0 0 N N N 20.078 0.468 13.990 -2.538 0.588  -5.291 HOP2   P2U 32 
P2U HOP3   3HOP H 0 0 N N N 19.039 1.517 15.982 0.474  0.618  -5.291 HOP3   P2U 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P2U N1    C2     SING N N 1  
P2U N1    C6     SING N N 2  
P2U N1    HN1    SING N N 3  
P2U C2    N3     SING N N 4  
P2U C2    O2     DOUB N N 5  
P2U N3    C4     SING N N 6  
P2U N3    HN3    SING N N 7  
P2U C4    C5     SING N N 8  
P2U C4    O4     DOUB N N 9  
P2U C5    C6     DOUB N N 10 
P2U C5    "C1'"  SING N N 11 
P2U C6    H6     SING N N 12 
P2U "C1'" "C2'"  SING N N 13 
P2U "C1'" "O4'"  SING N N 14 
P2U "C1'" "H1'"  SING N N 15 
P2U "C2'" "C3'"  SING N N 16 
P2U "C2'" "H2'"  SING N N 17 
P2U "C2'" "H2''" SING N N 18 
P2U "C3'" "C4'"  SING N N 19 
P2U "C3'" "O3'"  SING N N 20 
P2U "C3'" "H3'"  SING N N 21 
P2U "C4'" "O4'"  SING N N 22 
P2U "C4'" "C5'"  SING N N 23 
P2U "C4'" "H4'"  SING N N 24 
P2U "O3'" "HO3'" SING N N 25 
P2U "C5'" "O5'"  SING N N 26 
P2U "C5'" "H5'"  SING N N 27 
P2U "C5'" "H5''" SING N N 28 
P2U "O5'" P      SING N N 29 
P2U P     OP1    DOUB N N 30 
P2U P     OP2    SING N N 31 
P2U P     OP3    SING N N 32 
P2U OP2   HOP2   SING N N 33 
P2U OP3   HOP3   SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P2U SMILES           ACDLabs              10.04 "O=P(OCC2OC(C1=CNC(=O)NC1=O)CC2O)(O)O"                                                                                                       
P2U SMILES_CANONICAL CACTVS               3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O"                                                                                       
P2U SMILES           CACTVS               3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)C2=CNC(=O)NC2=O"                                                                                            
P2U SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1C2=CNC(=O)NC2=O)COP(=O)(O)O)O"                                                                                        
P2U SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1C2=CNC(=O)NC2=O)COP(=O)(O)O)O"                                                                                                     
P2U InChI            InChI                1.03  "InChI=1S/C9H13N2O8P/c12-5-1-6(4-2-10-9(14)11-8(4)13)19-7(5)3-18-20(15,16)17/h2,5-7,12H,1,3H2,(H2,15,16,17)(H2,10,11,13,14)/t5-,6+,7+/m0/s1" 
P2U InChIKey         InChI                1.03  QJNQHNJPOXCQQR-RRKCRQDMSA-N                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
P2U "SYSTEMATIC NAME" ACDLabs              10.04 "(1R)-1,4-anhydro-2-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-erythro-pentitol" 
P2U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-dioxo-1H-pyrimidin-5-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P2U "Create component"  2000-03-23 RCSB 
P2U "Modify descriptor" 2011-06-04 RCSB 
# 
