data_LDU
# 
_chem_comp.id                                    LDU 
_chem_comp.name                                  DIDEOXY-IMINO-LYXITOL 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H11 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-03-17 
_chem_comp.pdbx_modified_date                    2015-03-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        133.146 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LDU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4UFK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LDU O2   O2   O 0 1 N N N 78.540 87.519 20.600 0.442  1.770  -0.195 O2   LDU 1  
LDU C4   C4   C 0 1 N N S 78.942 88.854 20.348 0.466  0.683  0.732  C4   LDU 2  
LDU C3   C3   C 0 1 N N R 77.774 89.807 20.560 1.677  -0.231 0.455  C3   LDU 3  
LDU O1   O1   O 0 1 N N N 77.125 89.586 21.813 2.433  0.268  -0.650 O1   LDU 4  
LDU C2   C2   C 0 1 N N N 76.869 89.477 19.388 1.071  -1.609 0.112  C2   LDU 5  
LDU N    N    N 0 1 N N N 77.817 89.157 18.286 -0.302 -1.304 -0.368 N    LDU 6  
LDU C5   C5   C 0 1 N N R 79.178 89.094 18.855 -0.771 -0.220 0.533  C5   LDU 7  
LDU C6   C6   C 0 1 N N N 79.993 88.001 18.195 -1.905 0.568  -0.126 C6   LDU 8  
LDU O    O    O 0 1 N N N 80.439 88.416 16.914 -3.075 -0.249 -0.195 O    LDU 9  
LDU H2   H2   H 0 1 N N N 79.277 86.935 20.464 1.218  2.345  -0.146 H2   LDU 10 
LDU H4   H4   H 0 1 N N N 79.817 89.157 20.942 0.501  1.058  1.755  H4   LDU 11 
LDU H3   H3   H 0 1 N N N 78.125 90.846 20.476 2.307  -0.304 1.342  H3   LDU 12 
LDU H5   H5   H 0 1 N N N 79.686 90.060 18.720 -1.098 -0.633 1.487  H5   LDU 13 
LDU H1   H1   H 0 1 N N N 76.404 90.197 21.909 3.208  -0.267 -0.870 H1   LDU 14 
LDU H21C H21C H 0 0 N N N 76.229 88.612 19.618 1.649  -2.094 -0.674 H21C LDU 15 
LDU H22C H22C H 0 0 N N N 76.239 90.339 19.125 1.032  -2.239 1.000  H22C LDU 16 
LDU H    H    H 0 1 N N N 77.579 88.275 17.879 -0.289 -0.996 -1.329 H    LDU 17 
LDU H61C H61C H 0 0 N N N 80.865 87.770 18.824 -2.119 1.459  0.464  H61C LDU 18 
LDU H62C H62C H 0 0 N N N 79.370 87.101 18.087 -1.607 0.862  -1.133 H62C LDU 19 
LDU HA   HA   H 0 1 N N N 80.948 87.720 16.515 -3.836 0.187  -0.603 HA   LDU 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LDU O2 C4   SING N N 1  
LDU C4 C3   SING N N 2  
LDU C4 C5   SING N N 3  
LDU C3 O1   SING N N 4  
LDU C3 C2   SING N N 5  
LDU C2 N    SING N N 6  
LDU N  C5   SING N N 7  
LDU C5 C6   SING N N 8  
LDU C6 O    SING N N 9  
LDU O2 H2   SING N N 10 
LDU C4 H4   SING N N 11 
LDU C3 H3   SING N N 12 
LDU C5 H5   SING N N 13 
LDU O1 H1   SING N N 14 
LDU C2 H21C SING N N 15 
LDU C2 H22C SING N N 16 
LDU N  H    SING N N 17 
LDU C6 H61C SING N N 18 
LDU C6 H62C SING N N 19 
LDU O  HA   SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LDU InChI            InChI                1.03  "InChI=1S/C5H11NO3/c7-2-3-5(9)4(8)1-6-3/h3-9H,1-2H2/t3-,4-,5+/m1/s1" 
LDU InChIKey         InChI                1.03  OQEBIHBLFRADNM-WDCZJNDASA-N                                          
LDU SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1NC[C@@H](O)[C@H]1O"                                         
LDU SMILES           CACTVS               3.385 "OC[CH]1NC[CH](O)[CH]1O"                                             
LDU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@H]([C@H](N1)CO)O)O"                                      
LDU SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(C(N1)CO)O)O"                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R)-2-(hydroxymethyl)pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LDU "Create component" 2015-03-17 EBI  
LDU "Initial release"  2015-03-25 RCSB 
# 
