data_DNU
# 
_chem_comp.id                                    DNU 
_chem_comp.name                                  "1-[4-[7-(8-ethynyl-7-fluoranyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]piperazin-1-yl]-3-oxidanyl-propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-02 
_chem_comp.pdbx_modified_date                    2024-01-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        630.659 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DNU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JHL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DNU C4  C1  C 0 1 Y N N N N N -9.155  39.874 3.072  1.253  -0.896 -0.603 C4  DNU 1  
DNU C5  C2  C 0 1 Y N N N N N -9.298  39.371 4.412  -0.148 -1.046 -0.741 C5  DNU 2  
DNU C6  C3  C 0 1 Y N N N N N -8.448  39.853 5.426  -0.951 0.125  -0.742 C6  DNU 3  
DNU N1  N1  N 0 1 Y N N N N N -7.509  40.796 5.069  -0.358 1.317  -0.612 N1  DNU 4  
DNU N3  N2  N 0 1 Y N N N N N -8.212  40.788 2.822  1.743  0.331  -0.480 N3  DNU 5  
DNU CBM C4  C 0 1 N N N N N N -4.473  44.117 2.619  2.221  5.033  1.121  CBM DNU 6  
DNU CBN C5  C 0 1 N N R N N N -4.352  45.077 3.781  1.311  5.879  2.050  CBN DNU 7  
DNU FBT F1  F 0 1 N N N N N N -3.881  46.266 3.361  2.056  6.475  3.074  FBT DNU 8  
DNU CBO C6  C 0 1 N N N N N N -5.729  45.271 4.364  0.767  6.945  1.068  CBO DNU 9  
DNU NBP N3  N 0 1 N N N N N N -6.586  45.110 3.233  0.574  6.227  -0.211 NBP DNU 10 
DNU CBQ C7  C 0 1 N N N N N N -6.936  46.399 2.672  0.980  7.103  -1.333 CBQ DNU 11 
DNU CBR C8  C 0 1 N N N N N N -7.034  46.166 1.153  1.700  6.167  -2.335 CBR DNU 12 
DNU CBS C9  C 0 1 N N N N N N -6.072  44.972 0.899  2.443  5.196  -1.378 CBS DNU 13 
DNU CBL C10 C 0 1 N N S N N N -5.957  44.322 2.251  1.448  5.034  -0.212 CBL DNU 14 
DNU CBK C11 C 0 1 N N N N N N -6.680  42.901 2.198  0.635  3.747  -0.369 CBK DNU 15 
DNU OBI O1  O 0 1 N N N N N N -6.414  42.253 3.455  1.516  2.623  -0.357 OBI DNU 16 
DNU C2  C12 C 0 1 Y N N N N N -7.391  41.254 3.789  0.952  1.399  -0.487 C2  DNU 17 
DNU CAO C13 C 0 1 Y N N N N N -8.533  39.409 6.740  -2.339 -0.023 -0.879 CAO DNU 18 
DNU FAT F2  F 0 1 N N N N N N -7.519  39.735 7.564  -3.152 1.056  -0.886 FAT DNU 19 
DNU NAY N4  N 0 1 N N N N N N -9.964  39.448 1.935  2.085  -1.994 -0.590 NAY DNU 20 
DNU CBD C14 C 0 1 N N N N N N -10.532 38.150 1.889  2.800  -2.097 0.689  CBD DNU 21 
DNU CBC C15 C 0 1 N N N N N N -10.453 37.427 0.548  3.571  -3.421 0.733  CBC DNU 22 
DNU CAZ C16 C 0 1 N N N N N N -9.881  40.248 0.685  3.019  -1.960 -1.723 CAZ DNU 23 
DNU CBA C17 C 0 1 N N N N N N -10.650 39.690 -0.528 3.799  -3.278 -1.777 CBA DNU 24 
DNU NBB N5  N 0 1 N N N N N N -10.632 38.269 -0.632 4.421  -3.507 -0.464 NBB DNU 25 
DNU CBE C18 C 0 1 N N N N N N -10.778 37.572 -1.884 5.735  -3.789 -0.361 CBE DNU 26 
DNU OBF O2  O 0 1 N N N N N N -10.750 36.380 -1.865 6.421  -3.856 -1.359 OBF DNU 27 
DNU CBG C19 C 0 1 N N N N N N -10.959 38.301 -3.209 6.352  -4.020 0.995  CBG DNU 28 
DNU CBH C20 C 0 1 N N N N N N -12.366 38.061 -3.782 7.844  -4.319 0.832  CBH DNU 29 
DNU OBJ O3  O 0 1 N N N N N N -13.274 37.965 -2.678 8.429  -4.538 2.117  OBJ DNU 30 
DNU CAR C21 C 0 1 Y N N N N N -10.241 38.393 4.942  -0.762 -2.294 -0.877 CAR DNU 31 
DNU NAS N6  N 0 1 Y N N N N N -10.532 38.325 6.297  -2.066 -2.378 -1.003 NAS DNU 32 
DNU CAN C22 C 0 1 Y N N N N N -9.483  38.469 7.145  -2.858 -1.304 -1.007 CAN DNU 33 
DNU CAF C23 C 0 1 Y N N N N N -9.540  38.253 8.656  -4.320 -1.482 -1.153 CAF DNU 34 
DNU CAA C24 C 0 1 Y N N N N N -8.542  37.468 9.325  -5.130 -1.694 -0.015 CAA DNU 35 
DNU CAE C25 C 0 1 Y N N N N N -10.519 38.901 9.390  -4.910 -1.437 -2.406 CAE DNU 36 
DNU CAD C26 C 0 1 Y N N N N N -10.608 38.806 10.772 -6.282 -1.604 -2.549 CAD DNU 37 
DNU CAC C27 C 0 1 Y N N N N N -9.656  38.027 11.430 -7.082 -1.815 -1.467 CAC DNU 38 
DNU CAB C28 C 0 1 Y N N N N N -8.629  37.364 10.699 -6.525 -1.862 -0.177 CAB DNU 39 
DNU CAJ C29 C 0 1 Y N N N N N -7.727  36.622 11.481 -7.334 -2.074 0.954  CAJ DNU 40 
DNU CAI C30 C 0 1 Y N N N N N -6.694  35.932 10.855 -6.776 -2.117 2.195  CAI DNU 41 
DNU CAH C31 C 0 1 Y N N N N N -6.561  35.992 9.490  -5.405 -1.953 2.374  CAH DNU 42 
DNU FAK F3  F 0 1 N N N N N N -5.561  35.346 8.822  -4.881 -2.000 3.618  FAK DNU 43 
DNU CAG C32 C 0 1 Y N N N N N -7.477  36.747 8.705  -4.571 -1.742 1.283  CAG DNU 44 
DNU CAL C33 C 0 1 N N N N N N -7.213  36.706 7.212  -3.162 -1.574 1.471  CAL DNU 45 
DNU CAM C34 C 0 1 N N N N N N -6.992  36.670 6.054  -2.006 -1.437 1.625  CAM DNU 46 
DNU H1  H1  H 0 1 N N N N N N -4.268  43.080 2.924  3.197  5.504  1.002  H1  DNU 47 
DNU H2  H2  H 0 1 N N N N N N -3.805  44.394 1.790  2.329  4.019  1.506  H2  DNU 48 
DNU H3  H3  H 0 1 N N N N N N -3.698  44.633 4.546  0.501  5.275  2.459  H3  DNU 49 
DNU H4  H4  H 0 1 N N N N N N -5.835  46.275 4.800  -0.183 7.341  1.427  H4  DNU 50 
DNU H5  H5  H 0 1 N N N N N N -5.943  44.513 5.132  1.490  7.752  0.946  H5  DNU 51 
DNU H7  H7  H 0 1 N N N N N N -6.158  47.142 2.899  0.103  7.552  -1.798 H7  DNU 52 
DNU H8  H8  H 0 1 N N N N N N -7.901  46.745 3.072  1.660  7.878  -0.981 H8  DNU 53 
DNU H9  H9  H 0 1 N N N N N N -6.707  47.058 0.598  0.980  5.630  -2.954 H9  DNU 54 
DNU H10 H10 H 0 1 N N N N N N -8.063  45.909 0.861  2.405  6.723  -2.952 H10 DNU 55 
DNU H11 H11 H 0 1 N N N N N N -6.497  44.275 0.162  2.625  4.239  -1.866 H11 DNU 56 
DNU H12 H12 H 0 1 N N N N N N -5.091  45.325 0.547  3.377  5.638  -1.030 H12 DNU 57 
DNU H13 H13 H 0 1 N N N N N N -7.764  43.032 2.061  -0.073 3.663  0.456  H13 DNU 58 
DNU H14 H14 H 0 1 N N N N N N -6.276  42.301 1.369  0.091  3.774  -1.313 H14 DNU 59 
DNU H15 H15 H 0 1 N N N N N N -11.594 38.239 2.160  3.499  -1.266 0.783  H15 DNU 60 
DNU H16 H16 H 0 1 N N N N N N -10.014 37.530 2.635  2.085  -2.065 1.510  H16 DNU 61 
DNU H17 H17 H 0 1 N N N N N N -11.235 36.653 0.534  4.194  -3.452 1.628  H17 DNU 62 
DNU H18 H18 H 0 1 N N N N N N -9.464  36.951 0.478  2.868  -4.254 0.748  H18 DNU 63 
DNU H19 H19 H 0 1 N N N N N N -8.820  40.324 0.404  2.462  -1.829 -2.650 H19 DNU 64 
DNU H20 H20 H 0 1 N N N N N N -10.276 41.252 0.901  3.715  -1.130 -1.596 H20 DNU 65 
DNU H21 H21 H 0 1 N N N N N N -10.202 40.108 -1.442 3.118  -4.097 -2.007 H21 DNU 66 
DNU H22 H22 H 0 1 N N N N N N -11.698 40.016 -0.451 4.570  -3.216 -2.545 H22 DNU 67 
DNU H23 H23 H 0 1 N N N N N N -10.211 37.934 -3.927 6.225  -3.129 1.609  H23 DNU 68 
DNU H24 H24 H 0 1 N N N N N N -10.815 39.380 -3.049 5.863  -4.866 1.477  H24 DNU 69 
DNU H25 H25 H 0 1 N N N N N N -12.654 38.900 -4.432 7.971  -5.210 0.218  H25 DNU 70 
DNU H26 H26 H 0 1 N N N N N N -12.380 37.126 -4.362 8.333  -3.473 0.350  H26 DNU 71 
DNU H27 H27 H 0 1 N N N N N N -14.154 37.816 -3.003 9.375  -4.733 2.090  H27 DNU 72 
DNU H28 H28 H 0 1 N N N N N N -10.724 37.705 4.264  -0.162 -3.192 -0.879 H28 DNU 73 
DNU H29 H29 H 0 1 N N N N N N -11.244 39.506 8.865  -4.297 -1.271 -3.280 H29 DNU 74 
DNU H30 H30 H 0 1 N N N N N N -11.387 39.317 11.319 -6.721 -1.564 -3.535 H30 DNU 75 
DNU H31 H31 H 0 1 N N N N N N -9.698  37.926 12.504 -8.146 -1.941 -1.600 H31 DNU 76 
DNU H32 H32 H 0 1 N N N N N N -7.835  36.588 12.555 -8.400 -2.203 0.838  H32 DNU 77 
DNU H33 H33 H 0 1 N N N N N N -5.998  35.350 11.442 -7.407 -2.280 3.056  H33 DNU 78 
DNU H34 H34 H 0 1 N N N N N N -6.793  36.638 5.013  -0.972 -1.315 1.763  H34 DNU 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DNU CBH CBG SING N N 1  
DNU CBH OBJ SING N N 2  
DNU CBG CBE SING N N 3  
DNU CBE OBF DOUB N N 4  
DNU CBE NBB SING N N 5  
DNU NBB CBA SING N N 6  
DNU NBB CBC SING N N 7  
DNU CBA CAZ SING N N 8  
DNU CBC CBD SING N N 9  
DNU CAZ NAY SING N N 10 
DNU CBS CBR SING N N 11 
DNU CBS CBL SING N N 12 
DNU CBR CBQ SING N N 13 
DNU CBD NAY SING N N 14 
DNU NAY C4  SING N N 15 
DNU CBK CBL SING N N 16 
DNU CBK OBI SING N N 17 
DNU CBL CBM SING N N 18 
DNU CBL NBP SING N N 19 
DNU CBM CBN SING N N 20 
DNU CBQ NBP SING N N 21 
DNU N3  C4  DOUB Y N 22 
DNU N3  C2  SING Y N 23 
DNU C4  C5  SING Y N 24 
DNU NBP CBO SING N N 25 
DNU FBT CBN SING N N 26 
DNU OBI C2  SING N N 27 
DNU CBN CBO SING N N 28 
DNU C2  N1  DOUB Y N 29 
DNU C5  CAR DOUB Y N 30 
DNU C5  C6  SING Y N 31 
DNU CAR NAS SING Y N 32 
DNU N1  C6  SING Y N 33 
DNU C6  CAO DOUB Y N 34 
DNU CAM CAL TRIP N N 35 
DNU NAS CAN DOUB Y N 36 
DNU CAO CAN SING Y N 37 
DNU CAO FAT SING N N 38 
DNU CAN CAF SING N N 39 
DNU CAL CAG SING N N 40 
DNU CAF CAA DOUB Y N 41 
DNU CAF CAE SING Y N 42 
DNU CAG CAA SING Y N 43 
DNU CAG CAH DOUB Y N 44 
DNU FAK CAH SING N N 45 
DNU CAA CAB SING Y N 46 
DNU CAE CAD DOUB Y N 47 
DNU CAH CAI SING Y N 48 
DNU CAB CAC DOUB Y N 49 
DNU CAB CAJ SING Y N 50 
DNU CAD CAC SING Y N 51 
DNU CAI CAJ DOUB Y N 52 
DNU CBM H1  SING N N 53 
DNU CBM H2  SING N N 54 
DNU CBN H3  SING N N 55 
DNU CBO H4  SING N N 56 
DNU CBO H5  SING N N 57 
DNU CBQ H7  SING N N 58 
DNU CBQ H8  SING N N 59 
DNU CBR H9  SING N N 60 
DNU CBR H10 SING N N 61 
DNU CBS H11 SING N N 62 
DNU CBS H12 SING N N 63 
DNU CBK H13 SING N N 64 
DNU CBK H14 SING N N 65 
DNU CBD H15 SING N N 66 
DNU CBD H16 SING N N 67 
DNU CBC H17 SING N N 68 
DNU CBC H18 SING N N 69 
DNU CAZ H19 SING N N 70 
DNU CAZ H20 SING N N 71 
DNU CBA H21 SING N N 72 
DNU CBA H22 SING N N 73 
DNU CBG H23 SING N N 74 
DNU CBG H24 SING N N 75 
DNU CBH H25 SING N N 76 
DNU CBH H26 SING N N 77 
DNU OBJ H27 SING N N 78 
DNU CAR H28 SING N N 79 
DNU CAE H29 SING N N 80 
DNU CAD H30 SING N N 81 
DNU CAC H31 SING N N 82 
DNU CAJ H32 SING N N 83 
DNU CAI H33 SING N N 84 
DNU CAM H34 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DNU InChI            InChI                1.06  "InChI=1S/C34H33F3N6O3/c1-2-23-26(36)8-7-21-5-3-6-24(28(21)23)30-29(37)31-25(18-38-30)32(42-14-12-41(13-15-42)27(45)9-16-44)40-33(39-31)46-20-34-10-4-11-43(34)19-22(35)17-34/h1,3,5-8,18,22,44H,4,9-17,19-20H2/t22-,34+/m1/s1" 
DNU InChIKey         InChI                1.06  WLNNSRZGRWTCCZ-JXNPFXPLSA-N                                                                                                                                                                                                     
DNU SMILES_CANONICAL CACTVS               3.385 "OCCC(=O)N1CCN(CC1)c2nc(OC[C@@]34CCCN3C[C@H](F)C4)nc5c(F)c(ncc25)c6cccc7ccc(F)c(C#C)c67"                                                                                                                                        
DNU SMILES           CACTVS               3.385 "OCCC(=O)N1CCN(CC1)c2nc(OC[C]34CCCN3C[CH](F)C4)nc5c(F)c(ncc25)c6cccc7ccc(F)c(C#C)c67"                                                                                                                                           
DNU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#Cc1c(ccc2c1c(ccc2)c3c(c4c(cn3)c(nc(n4)OC[C@@]56CCCN5C[C@@H](C6)F)N7CCN(CC7)C(=O)CCO)F)F"                                                                                                                                     
DNU SMILES           "OpenEye OEToolkits" 2.0.7 "C#Cc1c(ccc2c1c(ccc2)c3c(c4c(cn3)c(nc(n4)OCC56CCCN5CC(C6)F)N7CCN(CC7)C(=O)CCO)F)F"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           DNU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[4-[7-(8-ethynyl-7-fluoranyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]piperazin-1-yl]-3-oxidanyl-propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DNU "Create component" 2023-06-02 PDBC 
DNU "Initial release"  2024-01-31 RCSB 
# 
