data_YXT
# 
_chem_comp.id                                    YXT 
_chem_comp.name                                  ralimetinib 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 F N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-03 
_chem_comp.pdbx_modified_date                    2023-10-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YXT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G63 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YXT C10  C1  C 0 1 Y N N 52.254 1.627  23.921 -0.571 2.762  -0.885 C10  YXT 1  
YXT N12  N1  N 0 1 Y N N 50.525 1.062  22.416 0.534  0.773  -0.203 N12  YXT 2  
YXT C13  C2  C 0 1 Y N N 49.989 0.642  24.744 -1.889 0.777  -0.185 C13  YXT 3  
YXT C20  C3  C 0 1 N N N 47.239 -1.805 27.272 -5.588 1.662  1.699  C20  YXT 4  
YXT C21  C4  C 0 1 N N N 47.776 -2.862 25.042 -6.193 1.151  -0.671 C21  YXT 5  
YXT C22  C5  C 0 1 Y N N 50.402 2.187  26.858 -1.158 -1.656 -0.474 C22  YXT 6  
YXT C24  C6  C 0 1 Y N N 51.649 2.676  28.863 -0.338 -3.875 -0.065 C24  YXT 7  
YXT C26  C7  C 0 1 Y N N 50.988 4.448  27.363 0.779  -2.453 -1.647 C26  YXT 8  
YXT C01  C8  C 0 1 N N N 51.077 -1.072 18.976 2.249  -0.074 2.361  C01  YXT 9  
YXT C02  C9  C 0 1 N N N 49.678 -0.515 19.257 3.588  -0.435 1.715  C02  YXT 10 
YXT C03  C10 C 0 1 N N N 48.768 -0.801 18.062 4.643  0.597  2.117  C03  YXT 11 
YXT C04  C11 C 0 1 N N N 49.080 -1.223 20.474 4.024  -1.823 2.188  C04  YXT 12 
YXT C05  C12 C 0 1 N N N 49.733 1.003  19.507 3.434  -0.441 0.192  C05  YXT 13 
YXT C07  C13 C 0 1 Y N N 51.288 1.469  21.373 1.714  1.331  -0.406 C07  YXT 14 
YXT C08  C14 C 0 1 Y N N 52.548 1.964  21.528 1.806  2.659  -0.862 C08  YXT 15 
YXT C09  C15 C 0 1 Y N N 53.073 2.053  22.861 0.630  3.380  -1.104 C09  YXT 16 
YXT C11  C16 C 0 1 Y N N 50.965 1.132  23.664 -0.594 1.440  -0.426 C11  YXT 17 
YXT C14  C17 C 0 1 Y N N 49.741 1.096  26.023 -2.144 -0.583 -0.205 C14  YXT 18 
YXT C16  C18 C 0 1 Y N N 48.408 -0.529 25.593 -4.012 0.412  0.249  C16  YXT 19 
YXT C18  C19 C 0 1 N N N 47.341 -1.587 25.761 -5.467 0.634  0.572  C18  YXT 20 
YXT C19  C20 C 0 1 N N N 46.032 -1.095 25.155 -6.097 -0.687 1.018  C19  YXT 21 
YXT C23  C21 C 0 1 Y N N 51.039 1.763  28.024 -1.258 -2.879 0.189  C23  YXT 22 
YXT C25  C22 C 0 1 Y N N 51.624 4.020  28.532 0.683  -3.663 -0.978 C25  YXT 23 
YXT C27  C23 C 0 1 Y N N 50.368 3.531  26.522 -0.132 -1.449 -1.396 C27  YXT 24 
YXT C30  C24 C 0 1 Y N N 52.057 1.959  19.396 3.839  1.917  -0.619 C30  YXT 25 
YXT F28  F1  F 0 1 N N N 52.242 4.917  29.366 1.587  -4.638 -1.216 F28  YXT 26 
YXT N06  N2  N 0 1 Y N N 51.003 1.462  20.058 3.015  0.888  -0.261 N06  YXT 27 
YXT N15  N3  N 0 1 Y N N 48.776 0.347  26.529 -3.451 -0.751 0.065  N15  YXT 28 
YXT N17  N4  N 0 1 Y N N 49.151 -0.335 24.508 -3.088 1.387  0.111  N17  YXT 29 
YXT N29  N5  N 0 1 Y N N 53.023 2.267  20.283 3.125  2.956  -0.977 N29  YXT 30 
YXT N31  N6  N 0 1 N N N 52.131 2.105  17.951 5.218  1.869  -0.609 N31  YXT 31 
YXT H101 H1  H 0 0 N N N 52.617 1.681  24.937 -1.495 3.292  -1.062 H101 YXT 32 
YXT H202 H2  H 0 0 N N N 46.924 -0.869 27.758 -6.641 1.822  1.933  H202 YXT 33 
YXT H201 H3  H 0 0 N N N 46.500 -2.592 27.480 -5.071 1.293  2.585  H201 YXT 34 
YXT H203 H4  H 0 0 N N N 48.220 -2.110 27.665 -5.139 2.603  1.381  H203 YXT 35 
YXT H213 H5  H 0 0 N N N 48.721 -3.223 25.474 -6.107 0.419  -1.474 H213 YXT 36 
YXT H212 H6  H 0 0 N N N 47.000 -3.633 25.161 -7.245 1.312  -0.437 H212 YXT 37 
YXT H211 H7  H 0 0 N N N 47.920 -2.649 23.973 -5.744 2.093  -0.988 H211 YXT 38 
YXT H241 H8  H 0 0 N N N 52.140 2.345  29.766 -0.414 -4.823 0.448  H241 YXT 39 
YXT H261 H9  H 0 0 N N N 50.978 5.498  27.112 1.577  -2.292 -2.357 H261 YXT 40 
YXT H012 H10 H 0 0 N N N 51.733 -0.867 19.835 1.497  -0.809 2.075  H012 YXT 41 
YXT H013 H11 H 0 0 N N N 51.013 -2.158 18.814 2.358  -0.070 3.446  H013 YXT 42 
YXT H011 H12 H 0 0 N N N 51.489 -0.591 18.077 1.937  0.915  2.024  H011 YXT 43 
YXT H032 H13 H 0 0 N N N 47.763 -0.402 18.262 4.753  0.601  3.201  H032 YXT 44 
YXT H033 H14 H 0 0 N N N 49.181 -0.320 17.163 5.597  0.339  1.656  H033 YXT 45 
YXT H031 H15 H 0 0 N N N 48.705 -1.887 17.901 4.332  1.585  1.779  H031 YXT 46 
YXT H042 H16 H 0 0 N N N 49.713 -1.037 21.355 3.273  -2.558 1.902  H042 YXT 47 
YXT H043 H17 H 0 0 N N N 48.067 -0.837 20.662 4.978  -2.080 1.728  H043 YXT 48 
YXT H041 H18 H 0 0 N N N 49.030 -2.305 20.281 4.134  -1.819 3.273  H041 YXT 49 
YXT H052 H19 H 0 0 N N N 49.563 1.519  18.550 4.388  -0.698 -0.268 H052 YXT 50 
YXT H051 H20 H 0 0 N N N 48.932 1.268  20.213 2.682  -1.176 -0.094 H051 YXT 51 
YXT H091 H21 H 0 0 N N N 54.066 2.435  23.044 0.670  4.401  -1.454 H091 YXT 52 
YXT H192 H22 H 0 0 N N N 45.712 -0.176 25.668 -6.011 -1.420 0.215  H192 YXT 53 
YXT H193 H23 H 0 0 N N N 46.179 -0.885 24.085 -5.581 -1.056 1.904  H193 YXT 54 
YXT H191 H24 H 0 0 N N N 45.259 -1.869 25.274 -7.150 -0.527 1.252  H191 YXT 55 
YXT H231 H25 H 0 0 N N N 51.056 0.712  28.273 -2.053 -3.046 0.900  H231 YXT 56 
YXT H271 H26 H 0 0 N N N 49.869 3.860  25.623 -0.051 -0.503 -1.912 H271 YXT 57 
YXT H171 H28 H 0 0 N N N 49.081 -0.850 23.654 -3.241 2.341  0.198  H171 YXT 58 
YXT H311 H29 H 0 0 N N N 53.024 2.477  17.698 5.673  1.059  -0.333 H311 YXT 59 
YXT H312 H30 H 0 0 N N N 52.008 1.212  17.519 5.732  2.646  -0.879 H312 YXT 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YXT N31 C30  SING N N 1  
YXT C03 C02  SING N N 2  
YXT C01 C02  SING N N 3  
YXT C02 C05  SING N N 4  
YXT C02 C04  SING N N 5  
YXT C30 N06  SING Y N 6  
YXT C30 N29  DOUB Y N 7  
YXT C05 N06  SING N N 8  
YXT N06 C07  SING Y N 9  
YXT N29 C08  SING Y N 10 
YXT C07 C08  DOUB Y N 11 
YXT C07 N12  SING Y N 12 
YXT C08 C09  SING Y N 13 
YXT N12 C11  DOUB Y N 14 
YXT C09 C10  DOUB Y N 15 
YXT C11 C10  SING Y N 16 
YXT C11 C13  SING N N 17 
YXT N17 C13  SING Y N 18 
YXT N17 C16  SING Y N 19 
YXT C13 C14  DOUB Y N 20 
YXT C21 C18  SING N N 21 
YXT C19 C18  SING N N 22 
YXT C16 C18  SING N N 23 
YXT C16 N15  DOUB Y N 24 
YXT C18 C20  SING N N 25 
YXT C14 N15  SING Y N 26 
YXT C14 C22  SING N N 27 
YXT C27 C22  DOUB Y N 28 
YXT C27 C26  SING Y N 29 
YXT C22 C23  SING Y N 30 
YXT C26 C25  DOUB Y N 31 
YXT C23 C24  DOUB Y N 32 
YXT C25 C24  SING Y N 33 
YXT C25 F28  SING N N 34 
YXT C10 H101 SING N N 35 
YXT C20 H202 SING N N 36 
YXT C20 H201 SING N N 37 
YXT C20 H203 SING N N 38 
YXT C21 H213 SING N N 39 
YXT C21 H212 SING N N 40 
YXT C21 H211 SING N N 41 
YXT C24 H241 SING N N 42 
YXT C26 H261 SING N N 43 
YXT C01 H012 SING N N 44 
YXT C01 H013 SING N N 45 
YXT C01 H011 SING N N 46 
YXT C03 H032 SING N N 47 
YXT C03 H033 SING N N 48 
YXT C03 H031 SING N N 49 
YXT C04 H042 SING N N 50 
YXT C04 H043 SING N N 51 
YXT C04 H041 SING N N 52 
YXT C05 H052 SING N N 53 
YXT C05 H051 SING N N 54 
YXT C09 H091 SING N N 55 
YXT C19 H192 SING N N 56 
YXT C19 H193 SING N N 57 
YXT C19 H191 SING N N 58 
YXT C23 H231 SING N N 59 
YXT C27 H271 SING N N 60 
YXT N17 H171 SING N N 61 
YXT N31 H311 SING N N 62 
YXT N31 H312 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YXT SMILES           ACDLabs              12.01 "Fc1ccc(cc1)c1nc([NH]c1c1ccc2nc(N)n(CC(C)(C)C)c2n1)C(C)(C)C"                                                                                                
YXT InChI            InChI                1.06  "InChI=1S/C24H29FN6/c1-23(2,3)13-31-20-17(28-22(31)26)12-11-16(27-20)19-18(14-7-9-15(25)10-8-14)29-21(30-19)24(4,5)6/h7-12H,13H2,1-6H3,(H2,26,28)(H,29,30)" 
YXT InChIKey         InChI                1.06  XPPBBJCBDOEXDN-UHFFFAOYSA-N                                                                                                                                 
YXT SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)Cn1c(N)nc2ccc(nc12)c3[nH]c(nc3c4ccc(F)cc4)C(C)(C)C"                                                                                                
YXT SMILES           CACTVS               3.385 "CC(C)(C)Cn1c(N)nc2ccc(nc12)c3[nH]c(nc3c4ccc(F)cc4)C(C)(C)C"                                                                                                
YXT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)Cn1c2c(ccc(n2)c3c(nc([nH]3)C(C)(C)C)c4ccc(cc4)F)nc1N"                                                                                              
YXT SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)Cn1c2c(ccc(n2)c3c(nc([nH]3)C(C)(C)C)c4ccc(cc4)F)nc1N"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YXT "SYSTEMATIC NAME" ACDLabs              12.01 "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" 
YXT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-~{tert}-butyl-4-(4-fluorophenyl)-1~{H}-imidazol-5-yl]-3-(2,2-dimethylpropyl)imidazo[4,5-b]pyridin-2-amine"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YXT "Create component" 2023-03-03 RCSB 
YXT "Initial release"  2023-10-11 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YXT 
_pdbx_chem_comp_synonyms.name         "(5P)-5-[2-tert-butyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-3-(2,2-dimethylpropyl)-3H-imidazo[4,5-b]pyridin-2-amine" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         "systematic name" 
# 
