data_YCT
# 
_chem_comp.id                                    YCT 
_chem_comp.name                                  "2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl L-leucinate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H34 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.440 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YCT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FX7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YCT C10 C1  C 0 1 N N N N N N 2.668  -29.935 -0.572 3.453  -0.148 0.839  C10 YCT 1  
YCT C11 C2  C 0 1 N N N N N N 2.019  -28.918 1.609  5.533  -0.114 -0.544 C11 YCT 2  
YCT C20 C3  C 0 1 N N N N N N 10.197 -35.114 -1.178 -4.744 2.747  0.531  C20 YCT 3  
YCT O01 O1  O 0 1 N N N N N N 8.374  -33.327 -1.931 -2.161 3.383  0.966  O01 YCT 4  
YCT C02 C4  C 0 1 N N N N N N 7.975  -34.113 -1.152 -2.350 2.506  0.149  C02 YCT 5  
YCT C03 C5  C 0 1 N N N N N N 6.551  -33.987 -0.668 -1.179 1.855  -0.541 C03 YCT 6  
YCT C04 C6  C 0 1 N N N N N N 6.446  -32.551 -0.190 0.123  2.479  -0.035 C04 YCT 7  
YCT N05 N1  N 0 1 N N N N N N 5.085  -32.138 0.016  1.261  1.845  -0.706 N05 YCT 8  
YCT C06 C7  C 0 1 N N N N N N 4.809  -31.463 1.256  2.518  2.238  -0.417 C06 YCT 9  
YCT C07 C8  C 0 1 N N R N N N 3.393  -30.989 1.559  3.692  1.508  -1.016 C07 YCT 10 
YCT C08 C9  C 0 1 N N N N N N 3.115  -29.665 0.860  4.436  0.748  0.084  C08 YCT 11 
YCT C09 C10 C 0 1 N N N N N N 4.376  -28.806 0.832  5.067  1.747  1.056  C09 YCT 12 
YCT O12 O2  O 0 1 N N N N N N 0.787  -29.325 1.111  6.228  -0.824 0.483  O12 YCT 13 
YCT P13 P1  P 0 1 N N N N N N -0.371 -28.198 0.817  7.449  -1.829 0.182  P13 YCT 14 
YCT O15 O3  O 0 1 N N N N N N -0.762 -28.230 -0.630 7.014  -2.855 -0.792 O15 YCT 15 
YCT O16 O4  O 0 1 N N N N N N 0.163  -26.847 1.175  8.688  -1.002 -0.426 O16 YCT 16 
YCT O17 O5  O 0 1 N N N N N N 2.499  -31.943 1.072  3.226  0.584  -2.002 O17 YCT 17 
YCT O18 O6  O 0 1 N N N N N N 5.698  -31.304 2.018  2.703  3.178  0.326  O18 YCT 18 
YCT N19 N2  N 0 1 N N N N N N 8.856  -35.131 -0.657 -3.606 2.114  -0.140 N19 YCT 19 
YCT C21 C11 C 0 1 N N N N N N 10.672 -36.520 -1.444 -6.046 2.123  0.025  C21 YCT 20 
YCT O22 O7  O 0 1 N N N N N N 11.363 -36.998 -0.331 -6.098 0.726  0.417  O22 YCT 21 
YCT C23 C12 C 0 1 N N N N N N 11.488 -38.377 -0.456 -7.184 0.029  0.048  C23 YCT 22 
YCT C24 C13 C 0 1 N N S N N N 12.814 -39.007 -0.858 -7.307 -1.426 0.420  C24 YCT 23 
YCT C25 C14 C 0 1 N N N N N N 13.055 -38.689 -2.328 -6.482 -2.273 -0.552 C25 YCT 24 
YCT C26 C15 C 0 1 N N N N N N 13.998 -39.663 -3.014 -6.487 -3.731 -0.089 C26 YCT 25 
YCT C27 C16 C 0 1 N N N N N N 15.408 -39.532 -2.446 -5.764 -4.596 -1.123 C27 YCT 26 
YCT C28 C17 C 0 1 N N N N N N 13.991 -39.413 -4.518 -5.771 -3.841 1.258  C28 YCT 27 
YCT N29 N3  N 0 1 N N N N N N 12.748 -40.440 -0.679 -8.717 -1.833 0.346  N29 YCT 28 
YCT O30 O8  O 0 1 N N N N N N 10.539 -39.056 -0.293 -8.063 0.568  -0.581 O30 YCT 29 
YCT H1  H1  H 0 1 N N N N N N 1.759  -30.554 -0.562 3.003  -0.860 0.147  H1  YCT 30 
YCT H2  H2  H 0 1 N N N N N N 2.456  -28.980 -1.076 3.983  -0.689 1.623  H2  YCT 31 
YCT H3  H3  H 0 1 N N N N N N 3.467  -30.465 -1.112 2.671  0.466  1.287  H3  YCT 32 
YCT H4  H4  H 0 1 N N N N N N 2.080  -29.149 2.683  5.083  -0.826 -1.237 H4  YCT 33 
YCT H5  H5  H 0 1 N N N N N N 2.140  -27.835 1.460  6.233  0.524  -1.083 H5  YCT 34 
YCT H6  H6  H 0 1 N N N N N N 10.865 -34.638 -0.445 -4.662 2.594  1.607  H6  YCT 35 
YCT H7  H7  H 0 1 N N N N N N 10.214 -34.541 -2.117 -4.745 3.815  0.315  H7  YCT 36 
YCT H8  H8  H 0 1 N N N N N N 5.842  -34.178 -1.487 -1.178 0.786  -0.325 H8  YCT 37 
YCT H9  H9  H 0 1 N N N N N N 6.356  -34.688 0.157  -1.261 2.007  -1.617 H9  YCT 38 
YCT H10 H10 H 0 1 N N N N N N 6.992  -32.455 0.760  0.122  3.547  -0.252 H10 YCT 39 
YCT H11 H11 H 0 1 N N N N N N 6.904  -31.894 -0.944 0.205  2.326  1.041  H11 YCT 40 
YCT H12 H12 H 0 1 N N N N N N 4.371  -32.310 -0.663 1.110  1.144  -1.359 H12 YCT 41 
YCT H13 H13 H 0 1 N N N N N N 3.279  -30.857 2.645  4.366  2.226  -1.482 H13 YCT 42 
YCT H14 H14 H 0 1 N N N N N N 4.707  -28.606 1.862  5.656  1.209  1.798  H14 YCT 43 
YCT H15 H15 H 0 1 N N N N N N 5.171  -29.339 0.289  5.713  2.431  0.506  H15 YCT 44 
YCT H16 H16 H 0 1 N N N N N N 4.160  -27.854 0.325  4.281  2.313  1.556  H16 YCT 45 
YCT H18 H18 H 0 1 N N N N N N 0.144  -26.285 0.409  9.025  -0.310 0.160  H18 YCT 46 
YCT H19 H19 H 0 1 N N N N N N 2.660  -32.776 1.499  2.619  -0.086 -1.657 H19 YCT 47 
YCT H20 H20 H 0 1 N N N N N N 8.556  -35.812 0.011  -3.757 1.412  -0.793 H20 YCT 48 
YCT H21 H21 H 0 1 N N N N N N 9.806  -37.168 -1.643 -6.895 2.653  0.457  H21 YCT 49 
YCT H22 H22 H 0 1 N N N N N N 11.340 -36.522 -2.318 -6.087 2.197  -1.062 H22 YCT 50 
YCT H23 H23 H 0 1 N N N N N N 13.625 -38.578 -0.251 -6.939 -1.575 1.435  H23 YCT 51 
YCT H24 H24 H 0 1 N N N N N N 13.486 -37.679 -2.399 -6.915 -2.206 -1.550 H24 YCT 52 
YCT H25 H25 H 0 1 N N N N N N 12.088 -38.713 -2.852 -5.457 -1.902 -0.575 H25 YCT 53 
YCT H26 H26 H 0 1 N N N N N N 13.641 -40.687 -2.828 -7.516 -4.075 0.017  H26 YCT 54 
YCT H27 H27 H 0 1 N N N N N N 15.386 -39.717 -1.362 -4.714 -4.308 -1.168 H27 YCT 55 
YCT H28 H28 H 0 1 N N N N N N 16.068 -40.267 -2.930 -5.841 -5.645 -0.837 H28 YCT 56 
YCT H29 H29 H 0 1 N N N N N N 15.787 -38.517 -2.637 -6.222 -4.453 -2.102 H29 YCT 57 
YCT H30 H30 H 0 1 N N N N N N 12.965 -39.513 -4.902 -4.742 -3.497 1.152  H30 YCT 58 
YCT H31 H31 H 0 1 N N N N N N 14.361 -38.398 -4.723 -6.286 -3.224 1.995  H31 YCT 59 
YCT H32 H32 H 0 1 N N N N N N 14.642 -40.148 -5.015 -5.774 -4.880 1.588  H32 YCT 60 
YCT H33 H33 H 0 1 N N N N N N 12.590 -40.649 0.286  -9.053 -1.805 -0.605 H33 YCT 61 
YCT H34 H34 H 0 1 N N N N N N 11.998 -40.810 -1.227 -8.852 -2.747 0.750  H34 YCT 62 
YCT O1  O9  O 0 1 N Y N N N N -0.799 -28.403 2.541  7.903  -2.547 1.550  O1  YCT 63 
YCT H17 H17 H 0 1 N Y N N N N -0.038 -28.224 3.080  8.636  -3.168 1.444  H17 YCT 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YCT C28 C26 SING N N 1  
YCT C26 C27 SING N N 2  
YCT C26 C25 SING N N 3  
YCT C25 C24 SING N N 4  
YCT O01 C02 DOUB N N 5  
YCT C21 C20 SING N N 6  
YCT C21 O22 SING N N 7  
YCT C20 N19 SING N N 8  
YCT C02 C03 SING N N 9  
YCT C02 N19 SING N N 10 
YCT C24 N29 SING N N 11 
YCT C24 C23 SING N N 12 
YCT C03 C04 SING N N 13 
YCT O15 P13 DOUB N N 14 
YCT C10 C08 SING N N 15 
YCT C23 O22 SING N N 16 
YCT C23 O30 DOUB N N 17 
YCT C04 N05 SING N N 18 
YCT N05 C06 SING N N 19 
YCT P13 O12 SING N N 20 
YCT P13 O16 SING N N 21 
YCT C09 C08 SING N N 22 
YCT C08 C07 SING N N 23 
YCT C08 C11 SING N N 24 
YCT O17 C07 SING N N 25 
YCT O12 C11 SING N N 26 
YCT C06 C07 SING N N 27 
YCT C06 O18 DOUB N N 28 
YCT C10 H1  SING N N 29 
YCT C10 H2  SING N N 30 
YCT C10 H3  SING N N 31 
YCT C11 H4  SING N N 32 
YCT C11 H5  SING N N 33 
YCT C20 H6  SING N N 34 
YCT C20 H7  SING N N 35 
YCT C03 H8  SING N N 36 
YCT C03 H9  SING N N 37 
YCT C04 H10 SING N N 38 
YCT C04 H11 SING N N 39 
YCT N05 H12 SING N N 40 
YCT C07 H13 SING N N 41 
YCT C09 H14 SING N N 42 
YCT C09 H15 SING N N 43 
YCT C09 H16 SING N N 44 
YCT O16 H18 SING N N 45 
YCT O17 H19 SING N N 46 
YCT N19 H20 SING N N 47 
YCT C21 H21 SING N N 48 
YCT C21 H22 SING N N 49 
YCT C24 H23 SING N N 50 
YCT C25 H24 SING N N 51 
YCT C25 H25 SING N N 52 
YCT C26 H26 SING N N 53 
YCT C27 H27 SING N N 54 
YCT C27 H28 SING N N 55 
YCT C27 H29 SING N N 56 
YCT C28 H30 SING N N 57 
YCT C28 H31 SING N N 58 
YCT C28 H32 SING N N 59 
YCT N29 H33 SING N N 60 
YCT N29 H34 SING N N 61 
YCT P13 O1  SING N N 62 
YCT O1  H17 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YCT SMILES           ACDLabs              12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCOC(=O)C(N)CC(C)C"                                                                                                                              
YCT InChI            InChI                1.06  "InChI=1S/C17H34N3O9P/c1-11(2)9-12(18)16(24)28-8-7-19-13(21)5-6-20-15(23)14(22)17(3,4)10-29-30(25,26)27/h11-12,14,22H,5-10,18H2,1-4H3,(H,19,21)(H,20,23)(H2,25,26,27)/t12-,14-/m0/s1" 
YCT InChIKey         InChI                1.06  MUSPDHOUGBMSMQ-JSGCOSHPSA-N                                                                                                                                                           
YCT SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](N)C(=O)OCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                    
YCT SMILES           CACTVS               3.385 "CC(C)C[CH](N)C(=O)OCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                      
YCT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)OCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)N"                                                                                                                    
YCT SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)OCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)N"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YCT "SYSTEMATIC NAME" ACDLabs              12.01 "2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl L-leucinate"                               
YCT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl (2~{S})-2-azanyl-4-methyl-pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YCT "Create component"         2023-01-24 RCSB 
YCT "Modify leaving atom flag" 2023-01-24 RCSB 
YCT "Initial release"          2023-06-21 RCSB 
YCT "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YCT 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
