data_VRT
# 
_chem_comp.id                                    VRT 
_chem_comp.name                                  "2'-(L-NORVALYL)AMINO-2'-DEOXYADENOSINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-23 
_chem_comp.pdbx_modified_date                    2016-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        365.388 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VRT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FOG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VRT C      C      C 0 1 N N N 1.565  25.234 18.948 -1.994 0.535  -0.916 C      VRT 1  
VRT N      N      N 0 1 N N N 2.214  23.621 21.005 -3.260 2.439  -1.739 N      VRT 2  
VRT O      O      O 0 1 N N N 1.447  26.379 18.499 -1.967 0.140  -2.062 O      VRT 3  
VRT N1     N1     N 0 1 Y N N 5.407  19.834 14.041 2.905  3.490  0.710  N1     VRT 4  
VRT C2     C2     C 0 1 Y N N 4.767  19.548 15.213 1.790  3.062  1.273  C2     VRT 5  
VRT N3     N3     N 0 1 Y N N 3.728  20.327 15.690 1.382  1.814  1.172  N3     VRT 6  
VRT C4     C4     C 0 1 Y N N 3.258  21.480 15.031 2.090  0.923  0.486  C4     VRT 7  
VRT C5     C5     C 0 1 Y N N 3.878  21.851 13.815 3.284  1.330  -0.133 C5     VRT 8  
VRT C6     C6     C 0 1 Y N N 5.020  20.963 13.343 3.678  2.672  0.004  C6     VRT 9  
VRT N6     N6     N 0 1 N N N 5.606  21.360 12.208 4.845  3.131  -0.583 N6     VRT 10 
VRT N7     N7     N 0 1 Y N N 3.267  23.000 13.316 3.801  0.244  -0.756 N7     VRT 11 
VRT C8     C8     C 0 1 Y N N 2.309  23.338 14.212 3.019  -0.779 -0.564 C8     VRT 12 
VRT N9     N9     N 0 1 Y N N 2.286  22.430 15.253 1.949  -0.410 0.197  N9     VRT 13 
VRT CA     CA     C 0 1 N N S 1.931  24.987 20.425 -2.898 1.680  -0.535 CA     VRT 14 
VRT CB     CB     C 0 1 N N N 2.221  26.217 21.316 -4.166 1.131  0.123  CB     VRT 15 
VRT CD     CD     C 0 1 N N N -0.218 26.398 22.100 -6.294 1.746  1.279  CD     VRT 16 
VRT CG     CG     C 0 1 N N N 0.957  27.096 21.439 -5.026 2.295  0.621  CG     VRT 17 
VRT "C1'"  "C1'"  C 0 1 N N R 1.378  22.460 16.474 0.851  -1.280 0.626  "C1'"  VRT 18 
VRT N10    N10    N 0 1 N N N 1.295  24.104 18.281 -1.221 -0.052 0.018  N10    VRT 19 
VRT "C2'"  "C2'"  C 0 1 N N R 0.848  23.872 16.903 -0.347 -1.169 -0.351 "C2'"  VRT 20 
VRT "C3'"  "C3'"  C 0 1 N N S -0.714 23.790 16.841 -1.064 -2.525 -0.140 "C3'"  VRT 21 
VRT "O3'"  "O3'"  O 0 1 N N N -1.467 24.259 18.028 -2.157 -2.377 0.769  "O3'"  VRT 22 
VRT "C4'"  "C4'"  C 0 1 N N R -1.001 22.302 16.497 0.022  -3.436 0.466  "C4'"  VRT 23 
VRT "O4'"  "O4'"  O 0 1 N N N 0.235  21.581 16.400 1.235  -2.668 0.532  "O4'"  VRT 24 
VRT "C5'"  "C5'"  C 0 1 N N N -1.605 21.894 15.153 0.229  -4.661 -0.427 "C5'"  VRT 25 
VRT "O5'"  "O5'"  O 0 1 N N N -1.783 20.467 15.118 1.151  -5.556 0.200  "O5'"  VRT 26 
VRT HN     HN     H 0 1 N N N 2.428  23.709 21.978 -2.446 2.866  -2.156 HN     VRT 27 
VRT HNA    HNA    H 0 1 N N N 1.410  23.038 20.892 -3.743 1.854  -2.405 HNA    VRT 28 
VRT H2     H2     H 0 1 N N N 5.082  18.688 15.785 1.191  3.761  1.839  H2     VRT 29 
VRT HN6    HN6    H 0 1 N N N 6.338  20.722 11.970 5.106  4.059  -0.482 HN6    VRT 30 
VRT HN6A   HN6A   H 0 0 N N N 4.929  21.380 11.473 5.401  2.523  -1.096 HN6A   VRT 31 
VRT H8     H8     H 0 1 N N N 1.657  24.194 14.125 3.192  -1.772 -0.950 H8     VRT 32 
VRT HA     HA     H 0 1 N N N 0.875  24.953 20.732 -2.379 2.335  0.165  HA     VRT 33 
VRT HB     HB     H 0 1 N N N 2.526  25.877 22.317 -4.730 0.549  -0.605 HB     VRT 34 
VRT HBA    HBA    H 0 1 N N N 3.032  26.808 20.866 -3.892 0.495  0.964  HBA    VRT 35 
VRT HD     HD     H 0 1 N N N -1.074 27.087 22.149 -6.858 1.163  0.551  HD     VRT 36 
VRT HDA    HDA    H 0 1 N N N -0.495 25.511 21.512 -6.020 1.110  2.121  HDA    VRT 37 
VRT HDB    HDB    H 0 1 N N N 0.064  26.090 23.118 -6.906 2.575  1.634  HDB    VRT 38 
VRT HG     HG     H 0 1 N N N 1.211  27.985 22.034 -4.462 2.877  1.349  HG     VRT 39 
VRT HGA    HGA    H 0 1 N N N 0.652  27.406 20.429 -5.299 2.931  -0.220 HGA    VRT 40 
VRT "H1'"  "H1'"  H 0 1 N N N 1.994  22.110 17.316 0.542  -1.032 1.642  "H1'"  VRT 41 
VRT HN10   HN10   H 0 0 N N N 1.421  23.270 18.818 -1.243 0.264  0.935  HN10   VRT 42 
VRT "H2'"  "H2'"  H 0 1 N N N 1.220  24.646 16.216 -0.002 -1.067 -1.379 "H2'"  VRT 43 
VRT "H3'"  "H3'"  H 0 1 N N N -1.034 24.390 15.976 -1.413 -2.924 -1.092 "H3'"  VRT 44 
VRT "HO3'" "HO3'" H 0 0 N N N -2.399 24.160 17.872 -2.642 -3.196 0.938  "HO3'" VRT 45 
VRT "H4'"  "H4'"  H 0 1 N N N -1.619 21.876 17.301 -0.274 -3.750 1.467  "H4'"  VRT 46 
VRT "H5'"  "H5'"  H 0 1 N N N -2.579 22.388 15.024 -0.724 -5.168 -0.576 "H5'"  VRT 47 
VRT "H5'A" "H5'A" H 0 0 N N N -0.929 22.199 14.340 0.628  -4.345 -1.391 "H5'A" VRT 48 
VRT "HO5'" "HO5'" H 0 0 N N N -2.158 20.215 14.283 1.331  -6.357 -0.311 "HO5'" VRT 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VRT C     O      DOUB N N 1  
VRT C     CA     SING N N 2  
VRT C     N10    SING N N 3  
VRT N     CA     SING N N 4  
VRT N1    C2     DOUB Y N 5  
VRT N1    C6     SING Y N 6  
VRT C2    N3     SING Y N 7  
VRT N3    C4     DOUB Y N 8  
VRT C4    C5     SING Y N 9  
VRT C4    N9     SING Y N 10 
VRT C5    C6     DOUB Y N 11 
VRT C5    N7     SING Y N 12 
VRT C6    N6     SING N N 13 
VRT N7    C8     DOUB Y N 14 
VRT C8    N9     SING Y N 15 
VRT N9    "C1'"  SING N N 16 
VRT CA    CB     SING N N 17 
VRT CB    CG     SING N N 18 
VRT CD    CG     SING N N 19 
VRT "C1'" "C2'"  SING N N 20 
VRT "C1'" "O4'"  SING N N 21 
VRT N10   "C2'"  SING N N 22 
VRT "C2'" "C3'"  SING N N 23 
VRT "C3'" "O3'"  SING N N 24 
VRT "C3'" "C4'"  SING N N 25 
VRT "C4'" "O4'"  SING N N 26 
VRT "C4'" "C5'"  SING N N 27 
VRT "C5'" "O5'"  SING N N 28 
VRT N     HN     SING N N 29 
VRT N     HNA    SING N N 30 
VRT C2    H2     SING N N 31 
VRT N6    HN6    SING N N 32 
VRT N6    HN6A   SING N N 33 
VRT C8    H8     SING N N 34 
VRT CA    HA     SING N N 35 
VRT CB    HB     SING N N 36 
VRT CB    HBA    SING N N 37 
VRT CD    HD     SING N N 38 
VRT CD    HDA    SING N N 39 
VRT CD    HDB    SING N N 40 
VRT CG    HG     SING N N 41 
VRT CG    HGA    SING N N 42 
VRT "C1'" "H1'"  SING N N 43 
VRT N10   HN10   SING N N 44 
VRT "C2'" "H2'"  SING N N 45 
VRT "C3'" "H3'"  SING N N 46 
VRT "O3'" "HO3'" SING N N 47 
VRT "C4'" "H4'"  SING N N 48 
VRT "C5'" "H5'"  SING N N 49 
VRT "C5'" "H5'A" SING N N 50 
VRT "O5'" "HO5'" SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VRT InChI            InChI                1.03  "InChI=1S/C15H23N7O4/c1-2-3-7(16)14(25)21-9-11(24)8(4-23)26-15(9)22-6-20-10-12(17)18-5-19-13(10)22/h5-9,11,15,23-24H,2-4,16H2,1H3,(H,21,25)(H2,17,18,19)/t7-,8+,9+,11+,15+/m0/s1" 
VRT InChIKey         InChI                1.03  NWKNSTYARDJRIZ-IEUWZBGXSA-N                                                                                                                                                       
VRT SMILES_CANONICAL CACTVS               3.385 "CCC[C@H](N)C(=O)N[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(N)ncnc23"                                                                                                               
VRT SMILES           CACTVS               3.385 "CCC[CH](N)C(=O)N[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(N)ncnc23"                                                                                                                      
VRT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC(C(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)CO)O)N"                                                                                                                     
VRT SMILES           "OpenEye OEToolkits" 1.7.6 "CCCC(C(=O)NC1C(C(OC1n2cnc3c2ncnc3N)CO)O)N"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VRT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VRT "Create component" 2015-11-23 EBI  
VRT "Initial release"  2016-08-03 RCSB 
# 
