data_UPT
# 
_chem_comp.id                                    UPT 
_chem_comp.name                                  "1-[(2R,3aR,4R,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-sulfidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H11 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-20 
_chem_comp.pdbx_modified_date                    2015-01-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        322.232 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UPT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4R09 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UPT S   S   S 0 1 N N N 16.878 -12.730 44.282 -4.148 -1.336 -0.804 S   UPT 1  
UPT P   P   P 0 1 N N R 15.903 -11.083 44.222 -2.686 -1.103 0.328  P   UPT 2  
UPT O   O   O 0 1 N N N 15.110 -10.807 45.588 -2.629 0.422  0.897  O   UPT 3  
UPT O5  O5  O 0 1 N N N 16.897 -9.891  43.818 -2.724 -2.166 1.537  O5  UPT 4  
UPT O6  O6  O 0 1 N N N 14.621 -11.216 43.321 -1.284 -1.213 -0.501 O6  UPT 5  
UPT C1  C1  C 0 1 N N R 13.386 -11.055 44.010 -0.401 -0.390 0.299  C1  UPT 6  
UPT C2  C2  C 0 1 N N R 13.743 -10.476 45.361 -1.244 0.782  0.858  C2  UPT 7  
UPT C3  C3  C 0 1 N N R 12.773 -11.104 46.346 -1.020 1.887  -0.201 C3  UPT 8  
UPT C4  C4  C 0 1 N N N 11.675 -10.127 46.797 -1.236 3.272  0.412  C4  UPT 9  
UPT O2  O2  O 0 1 N N N 11.089 -9.348  45.713 -1.138 4.265  -0.611 O2  UPT 10 
UPT O1  O1  O 0 1 N N N 12.180 -12.243 45.683 0.361  1.710  -0.584 O1  UPT 11 
UPT C   C   C 0 1 N N R 12.697 -12.370 44.336 0.600  0.294  -0.656 C   UPT 12 
UPT N   N   N 0 1 N N N 11.574 -12.733 43.460 1.972  -0.001 -0.235 N   UPT 13 
UPT C8  C8  C 0 1 N N N 11.533 -13.985 42.791 2.772  -0.729 -1.035 C8  UPT 14 
UPT O4  O4  O 0 1 N N N 12.483 -14.771 42.884 2.347  -1.134 -2.100 O4  UPT 15 
UPT N1  N1  N 0 1 N N N 10.486 -14.346 42.041 4.036  -1.015 -0.673 N1  UPT 16 
UPT C7  C7  C 0 1 N N N 9.433  -13.534 41.938 4.523  -0.573 0.504  C7  UPT 17 
UPT O3  O3  O 0 1 N N N 8.470  -13.850 41.210 5.667  -0.831 0.832  O3  UPT 18 
UPT C5  C5  C 0 1 N N N 9.409  -12.326 42.616 3.691  0.194  1.356  C5  UPT 19 
UPT C6  C6  C 0 1 N N N 10.509 -11.952 43.384 2.429  0.471  0.965  C6  UPT 20 
UPT H2  H2  H 0 1 N N N 12.700 -10.385 43.472 0.099  -0.961 1.082  H2  UPT 21 
UPT H3  H3  H 0 1 N N N 13.600 -9.385  45.346 -0.890 1.089  1.842  H3  UPT 22 
UPT H4  H4  H 0 1 N N N 13.332 -11.437 47.233 -1.680 1.739  -1.056 H4  UPT 23 
UPT H5  H5  H 0 1 N N N 12.112 -9.429  47.527 -2.225 3.317  0.868  H5  UPT 24 
UPT H6  H6  H 0 1 N N N 10.873 -10.707 47.278 -0.477 3.456  1.171  H6  UPT 25 
UPT H7  H7  H 0 1 N N N 10.422 -8.769  46.063 -1.265 5.170  -0.294 H7  UPT 26 
UPT H8  H8  H 0 1 N N N 13.449 -13.173 44.308 0.439  -0.057 -1.675 H8  UPT 27 
UPT H9  H9  H 0 1 N N N 10.493 -15.222 41.559 4.600  -1.541 -1.262 H9  UPT 28 
UPT H10 H10 H 0 1 N N N 8.546  -11.681 42.550 4.063  0.556  2.303  H10 UPT 29 
UPT H11 H11 H 0 1 N N N 10.492 -11.016 43.922 1.780  1.055  1.602  H11 UPT 30 
UPT H1  H1  H 0 1 N N N 17.772 -10.238 43.689 -3.513 -2.102 2.092  H1  UPT 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UPT O3 C7  DOUB N N 1  
UPT C7 N1  SING N N 2  
UPT C7 C5  SING N N 3  
UPT N1 C8  SING N N 4  
UPT C5 C6  DOUB N N 5  
UPT C8 O4  DOUB N N 6  
UPT C8 N   SING N N 7  
UPT O6 C1  SING N N 8  
UPT O6 P   SING N N 9  
UPT C6 N   SING N N 10 
UPT N  C   SING N N 11 
UPT O5 P   SING N N 12 
UPT C1 C   SING N N 13 
UPT C1 C2  SING N N 14 
UPT P  S   DOUB N N 15 
UPT P  O   SING N N 16 
UPT C  O1  SING N N 17 
UPT C2 O   SING N N 18 
UPT C2 C3  SING N N 19 
UPT O1 C3  SING N N 20 
UPT O2 C4  SING N N 21 
UPT C3 C4  SING N N 22 
UPT C1 H2  SING N N 23 
UPT C2 H3  SING N N 24 
UPT C3 H4  SING N N 25 
UPT C4 H5  SING N N 26 
UPT C4 H6  SING N N 27 
UPT O2 H7  SING N N 28 
UPT C  H8  SING N N 29 
UPT N1 H9  SING N N 30 
UPT C5 H10 SING N N 31 
UPT C6 H11 SING N N 32 
UPT O5 H1  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UPT SMILES           ACDLabs              12.01 "S=P1(OC2C(OC(C2O1)CO)N3C=CC(=O)NC3=O)O"                                                                                                          
UPT InChI            InChI                1.03  "InChI=1S/C9H11N2O7PS/c12-3-4-6-7(18-19(15,20)17-6)8(16-4)11-2-1-5(13)10-9(11)14/h1-2,4,6-8,12H,3H2,(H,15,20)(H,10,13,14)/t4-,6-,7-,8-,19-/m1/s1" 
UPT InChIKey         InChI                1.03  OIDQHQCLWHMGIL-VQAIERIMSA-N                                                                                                                       
UPT SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H]([C@@H]2O[P@](O)(=S)O[C@H]12)N3C=CC(=O)NC3=O"                                                                                      
UPT SMILES           CACTVS               3.385 "OC[CH]1O[CH]([CH]2O[P](O)(=S)O[CH]12)N3C=CC(=O)NC3=O"                                                                                            
UPT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@H](O2)CO)O[P@@](=S)(O3)O"                                                                                 
UPT SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)C2C3C(C(O2)CO)OP(=S)(O3)O"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UPT "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(2R,3aR,4R,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-sulfidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4(1H,3H)-dione"            
UPT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,3aR,4R,6R,6aR)-6-(hydroxymethyl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UPT "Create component" 2014-10-20 PDBJ 
UPT "Initial release"  2015-01-14 RCSB 
# 
