data_PNT
# 
_chem_comp.id                                    PNT 
_chem_comp.name                                  "1,5-BIS(4-AMIDINOPHENOXY)PENTANE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAD 
_chem_comp.formula                               "C19 H24 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.419 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PNT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1D64 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PNT C1     C1     C 0 1 Y N N 8.015  20.256 12.890 -4.867  -0.776 -0.008 C1     PNT 1  
PNT C2     C2     C 0 1 Y N N 9.314  19.968 12.659 -6.041  -1.519 -0.011 C2     PNT 2  
PNT C3     C3     C 0 1 Y N N 10.045 19.340 13.643 -7.262  -0.881 -0.006 C3     PNT 3  
PNT C4     C4     C 0 1 Y N N 9.470  18.916 14.839 -7.319  0.513  0.001  C4     PNT 4  
PNT C5     C5     C 0 1 Y N N 8.144  19.196 15.024 -6.138  1.257  0.003  C5     PNT 5  
PNT C6     C6     C 0 1 Y N N 7.416  19.828 14.086 -4.920  0.612  -0.001 C6     PNT 6  
PNT C7     C7     C 0 1 N N N 8.364  21.636 11.159 -2.499  -0.583 -0.004 C7     PNT 7  
PNT C8     C8     C 0 1 N N N 7.387  22.136 10.109 -1.249  -1.466 -0.003 C8     PNT 8  
PNT C9     C9     C 0 1 N N N 10.177 18.280 15.804 -8.628  1.202  0.005  C9     PNT 9  
PNT C10    C10    C 0 1 N N N 8.461  22.380 9.091  -0.000  -0.583 -0.001 C10    PNT 10 
PNT "C1'"  "C1'"  C 0 1 Y N N 9.529  24.644 5.028  4.867   -0.776 0.007  "C1'"  PNT 11 
PNT "C2'"  "C2'"  C 0 1 Y N N 10.557 23.800 4.883  6.041   -1.519 0.008  "C2'"  PNT 12 
PNT "C3'"  "C3'"  C 0 1 Y N N 11.412 23.992 3.832  7.262   -0.881 0.004  "C3'"  PNT 13 
PNT "C4'"  "C4'"  C 0 1 Y N N 11.252 25.036 2.927  7.319   0.513  0.000  "C4'"  PNT 14 
PNT "C5'"  "C5'"  C 0 1 Y N N 10.223 25.880 3.092  6.138   1.257  -0.001 "C5'"  PNT 15 
PNT "C6'"  "C6'"  C 0 1 Y N N 9.346  25.688 4.136  4.920   0.612  0.002  "C6'"  PNT 16 
PNT "C7'"  "C7'"  C 0 1 N N N 9.192  23.540 6.997  2.499   -0.583 0.003  "C7'"  PNT 17 
PNT "C8'"  "C8'"  C 0 1 N N N 8.093  23.404 8.061  1.249   -1.466 0.000  "C8'"  PNT 18 
PNT "C9'"  "C9'"  C 0 1 N N N 12.117 25.232 1.909  8.628   1.202  -0.003 "C9'"  PNT 19 
PNT O1     O1     O 0 1 N N N 7.362  20.928 11.992 -3.665  -1.408 -0.007 O1     PNT 20 
PNT "O1'"  "O1'"  O 0 1 N N N 8.683  24.468 5.993  3.665   -1.408 0.004  "O1'"  PNT 21 
PNT N1     N1     N 0 1 N N N 11.515 18.168 15.665 -9.730  0.506  0.002  N1     PNT 22 
PNT N2     N2     N 0 1 N N N 9.577  17.848 16.967 -8.683  2.579  0.012  N2     PNT 23 
PNT "N1'"  "N1'"  N 0 1 N N N 13.228 24.464 1.830  9.730   0.506  -0.002 "N1'"  PNT 24 
PNT "N2'"  "N2'"  N 0 1 N N N 11.893 26.224 0.971  8.683   2.579  -0.007 "N2'"  PNT 25 
PNT H2     H2     H 0 1 N N N 9.773  20.226 11.716 -5.996  -2.598 -0.017 H2     PNT 26 
PNT H3     H3     H 0 1 N N N 11.099 19.171 13.482 -8.174  -1.460 -0.009 H3     PNT 27 
PNT H5     H5     H 0 1 N N N 7.669  18.902 15.948 -6.178  2.336  0.009  H5     PNT 28 
PNT H6     H6     H 0 1 N N N 6.364  20.007 14.254 -4.006  1.187  0.001  H6     PNT 29 
PNT H71    H71    H 0 1 N N N 9.157  20.986 10.761 -2.500  0.046  0.886  H71    PNT 30 
PNT H72    H72    H 0 1 N N N 8.979  22.396 11.664 -2.497  0.047  -0.894 H72    PNT 31 
PNT H81    H81    H 0 1 N N N 6.613  21.414 9.809  -1.251  -2.096 0.886  H81    PNT 32 
PNT H82    H82    H 0 1 N N N 6.721  22.971 10.373 -1.248  -2.095 -0.894 H82    PNT 33 
PNT H101   H101   H 0 0 N N N 9.358  22.734 9.619  0.001   0.047  -0.890 H101   PNT 34 
PNT H102   H102   H 0 0 N N N 8.625  21.431 8.560  -0.001  0.046  0.890  H102   PNT 35 
PNT "H2'"  "H2'"  H 0 1 N N N 10.708 22.987 5.578  5.996   -2.598 0.011  "H2'"  PNT 36 
PNT "H3'"  "H3'"  H 0 1 N N N 12.239 23.310 3.701  8.174   -1.460 0.006  "H3'"  PNT 37 
PNT "H5'"  "H5'"  H 0 1 N N N 10.083 26.706 2.410  6.178   2.336  -0.004 "H5'"  PNT 38 
PNT "H6'"  "H6'"  H 0 1 N N N 8.508  26.357 4.261  4.006   1.187  0.001  "H6'"  PNT 39 
PNT "H7'1" "H7'1" H 0 0 N N N 10.117 23.929 7.447  2.500   0.047  -0.886 "H7'1" PNT 40 
PNT "H7'2" "H7'2" H 0 0 N N N 9.434  22.565 6.549  2.497   0.046  0.894  "H7'2" PNT 41 
PNT "H8'1" "H8'1" H 0 0 N N N 7.158  23.096 7.570  1.248   -2.096 0.890  "H8'1" PNT 42 
PNT "H8'2" "H8'2" H 0 0 N N N 7.970  24.375 8.562  1.251   -2.095 -0.890 "H8'2" PNT 43 
PNT HN1    HN1    H 0 1 N N N 11.898 17.679 16.449 -10.589 0.957  0.005  HN1    PNT 44 
PNT HN2    HN2    H 0 1 N N N 8.596  18.037 16.934 -7.863  3.097  0.014  HN2    PNT 45 
PNT HN3    HN3    H 0 1 N N N 10.052 17.411 17.730 -9.541  3.030  0.015  HN3    PNT 46 
PNT "HN'1" "HN'1" H 0 0 N N N 13.766 24.725 1.029  10.589  0.957  -0.003 "HN'1" PNT 47 
PNT "HN'2" "HN'2" H 0 0 N N N 11.040 26.703 1.179  7.863   3.097  -0.008 "HN'2" PNT 48 
PNT "HN'3" "HN'3" H 0 0 N N N 12.495 26.431 0.200  9.541   3.030  -0.009 "HN'3" PNT 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PNT C1    C2     DOUB Y N 1  
PNT C1    C6     SING Y N 2  
PNT C1    O1     SING N N 3  
PNT C2    C3     SING Y N 4  
PNT C2    H2     SING N N 5  
PNT C3    C4     DOUB Y N 6  
PNT C3    H3     SING N N 7  
PNT C4    C5     SING Y N 8  
PNT C4    C9     SING N N 9  
PNT C5    C6     DOUB Y N 10 
PNT C5    H5     SING N N 11 
PNT C6    H6     SING N N 12 
PNT C7    C8     SING N N 13 
PNT C7    O1     SING N N 14 
PNT C7    H71    SING N N 15 
PNT C7    H72    SING N N 16 
PNT C8    C10    SING N N 17 
PNT C8    H81    SING N N 18 
PNT C8    H82    SING N N 19 
PNT C9    N1     DOUB N N 20 
PNT C9    N2     SING N N 21 
PNT C10   "C8'"  SING N N 22 
PNT C10   H101   SING N N 23 
PNT C10   H102   SING N N 24 
PNT "C1'" "C2'"  DOUB Y N 25 
PNT "C1'" "C6'"  SING Y N 26 
PNT "C1'" "O1'"  SING N N 27 
PNT "C2'" "C3'"  SING Y N 28 
PNT "C2'" "H2'"  SING N N 29 
PNT "C3'" "C4'"  DOUB Y N 30 
PNT "C3'" "H3'"  SING N N 31 
PNT "C4'" "C5'"  SING Y N 32 
PNT "C4'" "C9'"  SING N N 33 
PNT "C5'" "C6'"  DOUB Y N 34 
PNT "C5'" "H5'"  SING N N 35 
PNT "C6'" "H6'"  SING N N 36 
PNT "C7'" "C8'"  SING N N 37 
PNT "C7'" "O1'"  SING N N 38 
PNT "C7'" "H7'1" SING N N 39 
PNT "C7'" "H7'2" SING N N 40 
PNT "C8'" "H8'1" SING N N 41 
PNT "C8'" "H8'2" SING N N 42 
PNT "C9'" "N1'"  DOUB N N 43 
PNT "C9'" "N2'"  SING N N 44 
PNT N1    HN1    SING N N 45 
PNT N2    HN2    SING N N 46 
PNT N2    HN3    SING N N 47 
PNT "N1'" "HN'1" SING N N 48 
PNT "N2'" "HN'2" SING N N 49 
PNT "N2'" "HN'3" SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PNT SMILES           ACDLabs              10.04 "O(c1ccc(cc1)C(=[N@H])N)CCCCCOc2ccc(C(=[N@H])N)cc2"                                                                                    
PNT SMILES_CANONICAL CACTVS               3.341 "NC(=N)c1ccc(OCCCCCOc2ccc(cc2)C(N)=N)cc1"                                                                                              
PNT SMILES           CACTVS               3.341 "NC(=N)c1ccc(OCCCCCOc2ccc(cc2)C(N)=N)cc1"                                                                                              
PNT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)OCCCCCOc2ccc(cc2)C(=N)N"                                                                                              
PNT SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)OCCCCCOc2ccc(cc2)C(=N)N"                                                                                              
PNT InChI            InChI                1.03  "InChI=1S/C19H24N4O2/c20-18(21)14-4-8-16(9-5-14)24-12-2-1-3-13-25-17-10-6-15(7-11-17)19(22)23/h4-11H,1-3,12-13H2,(H3,20,21)(H3,22,23)" 
PNT InChIKey         InChI                1.03  XDRYMKDFEDOLFX-UHFFFAOYSA-N                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PNT "SYSTEMATIC NAME" ACDLabs              10.04 "4,4'-[pentane-1,5-diylbis(oxy)]dibenzenecarboximidamide"     
PNT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[5-(4-carbamimidoylphenoxy)pentoxy]benzenecarboximidamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PNT "Create component"  1999-07-08 EBI  
PNT "Modify descriptor" 2011-06-04 RCSB 
# 
