data_MFT
# 
_chem_comp.id                                    MFT 
_chem_comp.name                                  
;3-methylthymidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-07-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.235 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MFT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3O1O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MFT P      P    P 0 1 N N N -0.018 0.056  -0.073 4.496  0.966  0.273  P    MFT 1  
MFT N1     N1   N 0 1 N N N 1.690  5.602  1.714  -2.063 -0.415 0.226  N1   MFT 2  
MFT C2     C2   C 0 1 N N N 2.130  6.702  2.420  -3.117 -0.349 1.059  C2   MFT 3  
MFT O2     O2   O 0 1 N N N 1.310  7.616  2.686  -3.114 -1.006 2.082  O2   MFT 4  
MFT N3     N3   N 0 1 N N N 3.438  6.822  2.846  -4.175 0.434  0.776  N3   MFT 5  
MFT C4     C4   C 0 1 N N N 4.325  5.807  2.577  -4.193 1.169  -0.354 C4   MFT 6  
MFT O4     O4   O 0 1 N N N 5.506  5.850  3.005  -5.149 1.878  -0.611 O4   MFT 7  
MFT C5     C5   C 0 1 N N N 3.940  4.685  1.811  -3.090 1.109  -1.240 C5   MFT 8  
MFT C6     C6   C 0 1 N N N 2.600  4.632  1.392  -2.040 0.319  -0.929 C6   MFT 9  
MFT "C1'"  C1*  C 0 1 N N R 0.291  5.452  1.310  -0.926 -1.277 0.561  C1*  MFT 10 
MFT O1P    O1P  O 0 1 N N N -0.693 -0.716 1.038  4.071  2.264  -0.580 O1P  MFT 11 
MFT "C2'"  C2*  C 0 1 N N N -0.058 6.206  0.003  -0.802 -2.407 -0.479 C2*  MFT 12 
MFT C21    C21  C 0 1 N N N 3.875  7.984  3.605  -5.310 0.488  1.700  C21  MFT 13 
MFT O2P    O2P  O 0 1 N N N -0.465 -0.511 -1.400 5.104  1.430  1.689  O2P  MFT 14 
MFT "C3'"  C3*  C 0 1 N N S -0.084 5.090  -1.050 0.621  -2.229 -1.064 C3*  MFT 15 
MFT "O3'"  O3*  O 0 1 N N N -0.952 5.362  -2.150 1.259  -3.495 -1.246 O3*  MFT 16 
MFT "C4'"  C4*  C 0 1 N N R -0.565 3.874  -0.230 1.327  -1.408 0.045  C4*  MFT 17 
MFT "O4'"  O4*  O 0 1 N N N -0.102 4.076  1.116  0.293  -0.516 0.518  O4*  MFT 18 
MFT "C5'"  C5*  C 0 1 N N N -0.078 2.513  -0.798 2.499  -0.614 -0.537 C5*  MFT 19 
MFT "O5'"  O5*  O 0 1 N N N -0.428 1.518  0.026  3.203  0.040  0.521  O5*  MFT 20 
MFT C5M    C5M  C 0 1 N N N 4.871  3.573  1.478  -3.086 1.920  -2.510 C5M  MFT 21 
MFT H6     H6   H 0 1 N N N 2.276  3.794  0.793  -1.190 0.260  -1.592 H6   MFT 22 
MFT "H1'"  H1*  H 0 1 N N N -0.260 5.890  2.155  -1.064 -1.702 1.555  H1*  MFT 23 
MFT HO1P   HO1P H 0 0 N N N -0.033 -1.123 1.588  3.404  2.816  -0.150 HO1P MFT 24 
MFT "H2'"  H2*  H 0 1 N N N -1.030 6.716  0.077  -0.897 -3.380 0.002  H2*  MFT 25 
MFT "H2'A" H2*A H 0 0 N N N 0.695  6.971  -0.236 -1.552 -2.291 -1.261 H2*A MFT 26 
MFT H21    H21  H 0 1 N N N 4.944  7.885  3.845  -5.148 1.282  2.429  H21  MFT 27 
MFT H21A   H21A H 0 0 N N N 3.716  8.893  3.007  -6.224 0.690  1.141  H21A MFT 28 
MFT H21B   H21B H 0 0 N N N 3.295  8.052  4.537  -5.404 -0.467 2.217  H21B MFT 29 
MFT HO2P   HO2P H 0 0 N N N 0.290  -0.833 -1.878 5.887  1.992  1.616  HO2P MFT 30 
MFT "H3'"  H3*  H 0 1 N N N 0.894  4.949  -1.534 0.590  -1.673 -2.001 H3*  MFT 31 
MFT "HO3'" HO3* H 0 0 N N N -0.923 4.637  -2.763 0.802  -4.081 -1.865 HO3* MFT 32 
MFT "H4'"  H4*  H 0 1 N N N -1.662 3.814  -0.275 1.666  -2.061 0.849  H4*  MFT 33 
MFT "H5'"  H5*  H 0 1 N N N -0.537 2.346  -1.784 3.175  -1.293 -1.057 H5*  MFT 34 
MFT "H5'A" H5*A H 0 0 N N N 1.017  2.533  -0.898 2.122  0.130  -1.237 H5*A MFT 35 
MFT H5M    H5M  H 0 1 N N N 4.342  2.819  0.876  -4.011 2.491  -2.579 H5M  MFT 36 
MFT H5MA   H5MA H 0 0 N N N 5.723  3.968  0.905  -2.236 2.603  -2.502 H5MA MFT 37 
MFT H5MB   H5MB H 0 0 N N N 5.236  3.110  2.407  -3.006 1.252  -3.368 H5MB MFT 38 
MFT O8     O8   O 0 1 N N N 1.448  -0.072 0.056  5.517  0.197  -0.474 O8   MFT 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MFT P     "O5'"  SING N N 1  
MFT N1    "C1'"  SING N N 2  
MFT N1    C2     SING N N 3  
MFT C2    O2     DOUB N N 4  
MFT N3    C2     SING N N 5  
MFT N3    C21    SING N N 6  
MFT C4    N3     SING N N 7  
MFT O4    C4     DOUB N N 8  
MFT C5    C4     SING N N 9  
MFT C5    C6     DOUB N N 10 
MFT C6    N1     SING N N 11 
MFT C6    H6     SING N N 12 
MFT "C1'" "H1'"  SING N N 13 
MFT O1P   P      SING N N 14 
MFT O1P   HO1P   SING N N 15 
MFT "C2'" "C1'"  SING N N 16 
MFT "C2'" "C3'"  SING N N 17 
MFT "C2'" "H2'"  SING N N 18 
MFT "C2'" "H2'A" SING N N 19 
MFT C21   H21    SING N N 20 
MFT C21   H21A   SING N N 21 
MFT C21   H21B   SING N N 22 
MFT O2P   P      SING N N 23 
MFT O2P   HO2P   SING N N 24 
MFT "C3'" "O3'"  SING N N 25 
MFT "C3'" "H3'"  SING N N 26 
MFT "O3'" "HO3'" SING N N 27 
MFT "C4'" "C3'"  SING N N 28 
MFT "C4'" "O4'"  SING N N 29 
MFT "C4'" "H4'"  SING N N 30 
MFT "O4'" "C1'"  SING N N 31 
MFT "C5'" "C4'"  SING N N 32 
MFT "C5'" "H5'"  SING N N 33 
MFT "C5'" "H5'A" SING N N 34 
MFT "O5'" "C5'"  SING N N 35 
MFT C5M   C5     SING N N 36 
MFT C5M   H5M    SING N N 37 
MFT C5M   H5MA   SING N N 38 
MFT C5M   H5MB   SING N N 39 
MFT O8    P      DOUB N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MFT SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)N(C(=O)C(=C1)C)C)CC2O"                                                                                            
MFT SMILES_CANONICAL CACTVS               3.370 "CN1C(=O)N(C=C(C)C1=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                             
MFT SMILES           CACTVS               3.370 "CN1C(=O)N(C=C(C)C1=O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                 
MFT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)N(C1=O)C)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                               
MFT SMILES           "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)N(C1=O)C)C2CC(C(O2)COP(=O)(O)O)O"                                                                                            
MFT InChI            InChI                1.03  "InChI=1S/C11H17N2O8P/c1-6-4-13(11(16)12(2)10(6)15)9-3-7(14)8(21-9)5-20-22(17,18)19/h4,7-9,14H,3,5H2,1-2H3,(H2,17,18,19)/t7-,8+,9+/m0/s1" 
MFT InChIKey         InChI                1.03  NTZJWSXYZFTRBM-DJLDLDEBSA-N                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MFT "SYSTEMATIC NAME" ACDLabs              12.01 
;3-methylthymidine 5'-(dihydrogen phosphate)
;
MFT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(3,5-dimethyl-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MFT "Create component"  2010-07-23 RCSB 
MFT "Modify descriptor" 2011-06-04 RCSB 
# 
