data_GMT
#

_chem_comp.id                                   GMT
_chem_comp.name                                 "(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H19 N O10"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;(2S)-2-{[2-(acetylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid;
(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucosyl]oxy}butanedioic acid;
(2S)-2-{[2-acetamido-2-deoxy-D-glucosyl]oxy}butanedioic acid; (2S)-2-{[2-acetamido-2-deoxy-glucosyl]oxy}butanedioic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-06
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       337.280
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GMT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5D00
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GMT  "(2S)-2-{[2-(acetylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid"  PDB  ?  
2  GMT  "(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucosyl]oxy}butanedioic acid"            PDB  ?  
3  GMT  "(2S)-2-{[2-acetamido-2-deoxy-D-glucosyl]oxy}butanedioic acid"                  PDB  ?  
4  GMT  "(2S)-2-{[2-acetamido-2-deoxy-glucosyl]oxy}butanedioic acid"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GMT  O16  O16  O  0  1  N  N  N  -15.572  25.203  20.165   2.672   0.980   0.771  O16  GMT   1  
GMT  C12  C12  C  0  1  N  N  N  -15.511  24.124  20.809   2.819   1.848  -0.056  C12  GMT   2  
GMT  O15  O15  O  0  1  N  N  N  -16.254  23.860  21.788   4.053   2.189  -0.460  O15  GMT   3  
GMT  C11  C11  C  0  1  N  N  N  -14.509  23.059  20.408   1.616   2.546  -0.638  C11  GMT   4  
GMT  C9   C9   C  0  1  N  N  S  -14.781  22.574  18.980   0.342   1.969  -0.016  C9   GMT   5  
GMT  C10  C10  C  0  1  N  N  N  -13.652  21.647  18.645  -0.852   2.748  -0.505  C10  GMT   6  
GMT  O14  O14  O  0  1  N  N  N  -13.638  20.482  19.134  -1.022   4.024  -0.126  O14  GMT   7  
GMT  O13  O13  O  0  1  N  N  N  -12.749  22.114  17.916  -1.656   2.224  -1.239  O13  GMT   8  
GMT  O1   O1   O  0  1  N  N  N  -16.075  21.948  18.850   0.205   0.599  -0.396  O1   GMT   9  
GMT  C1   C1   C  0  1  N  N  R  -16.707  22.052  17.539   0.026  -0.294   0.705  C1   GMT  10  
GMT  O5   O5   O  0  1  N  N  N  -16.190  21.076  16.602  -1.289  -0.132   1.241  O5   GMT  11  
GMT  C5   C5   C  0  1  N  N  R  -16.476  19.729  16.995  -2.337  -0.375   0.300  C5   GMT  12  
GMT  C6   C6   C  0  1  N  N  N  -15.635  18.733  16.176  -3.691  -0.145   0.973  C6   GMT  13  
GMT  O6   O6   O  0  1  N  N  N  -15.828  18.924  14.770  -3.816   1.233   1.332  O6   GMT  14  
GMT  C4   C4   C  0  1  N  N  S  -17.987  19.520  16.905  -2.251  -1.821  -0.195  C4   GMT  15  
GMT  O4   O4   O  0  1  N  N  N  -18.301  18.142  17.178  -3.262  -2.049  -1.179  O4   GMT  16  
GMT  C3   C3   C  0  1  N  N  R  -18.700  20.487  17.886  -0.871  -2.060  -0.814  C3   GMT  17  
GMT  O3   O3   O  0  1  N  N  N  -20.146  20.358  17.774  -0.757  -3.427  -1.215  O3   GMT  18  
GMT  C2   C2   C  0  1  N  N  R  -18.242  21.922  17.605   0.206  -1.737   0.226  C2   GMT  19  
GMT  N2   N2   N  0  1  N  N  N  -18.677  22.867  18.663   1.532  -1.891  -0.378  N2   GMT  20  
GMT  C7   C7   C  0  1  N  N  N  -19.452  23.924  18.434   2.600  -2.153   0.401  C7   GMT  21  
GMT  O7   O7   O  0  1  N  N  N  -19.863  24.169  17.322   2.464  -2.262   1.601  O7   GMT  22  
GMT  C8   C8   C  0  1  N  N  N  -19.817  24.810  19.593   3.964  -2.311  -0.221  C8   GMT  23  
GMT  H1A  H1   H  0  1  N  N  N  -16.842  24.589  21.945   4.793   1.711  -0.061  H1A  GMT  24  
GMT  H2A  H2   H  0  1  N  N  N  -14.589  22.208  21.100   1.675   3.612  -0.422  H2A  GMT  25  
GMT  H3A  H3   H  0  1  N  N  N  -13.494  23.480  20.460   1.595   2.394  -1.717  H3A  GMT  26  
GMT  H4A  H4   H  0  1  N  N  N  -14.730  23.444  18.308   0.403   2.041   1.069  H4A  GMT  27  
GMT  H5A  H5   H  0  1  N  N  N  -12.846  20.033  18.861  -1.803   4.483  -0.465  H5A  GMT  28  
GMT  H1   H6   H  0  1  N  N  N  -16.489  23.053  17.139   0.763  -0.073   1.476  H1   GMT  29  
GMT  H5   H7   H  0  1  N  N  N  -16.191  19.605  18.050  -2.231   0.305  -0.545  H5   GMT  30  
GMT  H61  H8   H  0  1  N  N  N  -15.932  17.708  16.443  -4.490  -0.415   0.283  H61  GMT  31  
GMT  H62  H9   H  0  1  N  N  N  -14.571  18.880  16.415  -3.760  -0.761   1.869  H62  GMT  32  
GMT  HO6  H10  H  0  1  N  Y  N  -15.299  18.298  14.289  -4.653   1.452   1.765  HO6  GMT  33  
GMT  H4   H11  H  0  1  N  N  N  -18.310  19.773  15.884  -2.399  -2.502   0.643  H4   GMT  34  
GMT  HO4  H12  H  0  1  N  Y  N  -19.241  18.014  17.122  -4.163  -1.911  -0.857  HO4  GMT  35  
GMT  H3   H13  H  0  1  N  N  N  -18.392  20.222  18.908  -0.744  -1.414  -1.683  H3   GMT  36  
GMT  HO3  H14  H  0  1  N  Y  N  -20.566  20.956  18.381  -1.414  -3.702  -1.869  HO3  GMT  37  
GMT  H2   H15  H  0  1  N  N  N  -18.661  22.241  16.639   0.109  -2.417   1.073  H2   GMT  38  
GMT  HN2  H16  H  0  1  N  N  N  -18.371  22.700  19.600   1.640  -1.804  -1.338  HN2  GMT  39  
GMT  H81  H17  H  0  1  N  N  N  -20.462  25.628  19.241   3.889  -2.181  -1.300  H81  GMT  40  
GMT  H82  H18  H  0  1  N  N  N  -20.354  24.220  20.350   4.640  -1.561   0.190  H82  GMT  41  
GMT  H83  H19  H  0  1  N  N  N  -18.902  25.230  20.036   4.351  -3.306  -0.001  H83  GMT  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GMT  O6   C6   SING  N  N   1  
GMT  C6   C5   SING  N  N   2  
GMT  O5   C5   SING  N  N   3  
GMT  O5   C1   SING  N  N   4  
GMT  C4   C5   SING  N  N   5  
GMT  C4   O4   SING  N  N   6  
GMT  C4   C3   SING  N  N   7  
GMT  O7   C7   DOUB  N  N   8  
GMT  C1   C2   SING  N  N   9  
GMT  C1   O1   SING  N  N  10  
GMT  C2   C3   SING  N  N  11  
GMT  C2   N2   SING  N  N  12  
GMT  O3   C3   SING  N  N  13  
GMT  O13  C10  DOUB  N  N  14  
GMT  C7   N2   SING  N  N  15  
GMT  C7   C8   SING  N  N  16  
GMT  C10  C9   SING  N  N  17  
GMT  C10  O14  SING  N  N  18  
GMT  O1   C9   SING  N  N  19  
GMT  C9   C11  SING  N  N  20  
GMT  O16  C12  DOUB  N  N  21  
GMT  C11  C12  SING  N  N  22  
GMT  C12  O15  SING  N  N  23  
GMT  O15  H1A  SING  N  N  24  
GMT  C11  H2A  SING  N  N  25  
GMT  C11  H3A  SING  N  N  26  
GMT  C9   H4A  SING  N  N  27  
GMT  O14  H5A  SING  N  N  28  
GMT  C1   H1   SING  N  N  29  
GMT  C5   H5   SING  N  N  30  
GMT  C6   H61  SING  N  N  31  
GMT  C6   H62  SING  N  N  32  
GMT  O6   HO6  SING  N  N  33  
GMT  C4   H4   SING  N  N  34  
GMT  O4   HO4  SING  N  N  35  
GMT  C3   H3   SING  N  N  36  
GMT  O3   HO3  SING  N  N  37  
GMT  C2   H2   SING  N  N  38  
GMT  N2   HN2  SING  N  N  39  
GMT  C8   H81  SING  N  N  40  
GMT  C8   H82  SING  N  N  41  
GMT  C8   H83  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GMT  SMILES            ACDLabs               12.01  "O=C(O)CC(C(O)=O)OC1C(C(C(C(O1)CO)O)O)NC(C)=O"  
GMT  InChI             InChI                 1.03   "InChI=1S/C12H19NO10/c1-4(15)13-8-10(19)9(18)6(3-14)23-12(8)22-5(11(20)21)2-7(16)17/h5-6,8-10,12,14,18-19H,2-3H2,1H3,(H,13,15)(H,16,17)(H,20,21)/t5-,6+,8+,9+,10+,12-/m0/s1"  
GMT  InChIKey          InChI                 1.03   COBMRTSHZAUOCY-BVKYVCSXSA-N  
GMT  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H](CC(O)=O)C(O)=O"  
GMT  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CC(O)=O)C(O)=O"  
GMT  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[C@@H](CC(=O)O)C(=O)O)CO)O)O"  
GMT  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(=O)NC1C(C(C(OC1OC(CC(=O)O)C(=O)O)CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GMT  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-{[2-(acetylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid"  
GMT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2S)-2-[(2R,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxybutanedioic acid"  
#
_pdbx_chem_comp_related.comp_id            GMT
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  GMT  C1   NDG  C1   "Carbohydrate core"  
 2  GMT  C2   NDG  C2   "Carbohydrate core"  
 3  GMT  C3   NDG  C3   "Carbohydrate core"  
 4  GMT  C4   NDG  C4   "Carbohydrate core"  
 5  GMT  C5   NDG  C5   "Carbohydrate core"  
 6  GMT  C6   NDG  C6   "Carbohydrate core"  
 7  GMT  C7   NDG  C7   "Carbohydrate core"  
 8  GMT  C8   NDG  C8   "Carbohydrate core"  
 9  GMT  N2   NDG  N2   "Carbohydrate core"  
10  GMT  O1   NDG  O1   "Carbohydrate core"  
11  GMT  O3   NDG  O3   "Carbohydrate core"  
12  GMT  O4   NDG  O4   "Carbohydrate core"  
13  GMT  O5   NDG  O5   "Carbohydrate core"  
14  GMT  O6   NDG  O6   "Carbohydrate core"  
15  GMT  O7   NDG  O7   "Carbohydrate core"  
16  GMT  HO6  NDG  HO6  "Carbohydrate core"  
17  GMT  H4   NDG  H4   "Carbohydrate core"  
18  GMT  HO4  NDG  HO4  "Carbohydrate core"  
19  GMT  H3   NDG  H3   "Carbohydrate core"  
20  GMT  HO3  NDG  HO3  "Carbohydrate core"  
21  GMT  H2   NDG  H2   "Carbohydrate core"  
22  GMT  HN2  NDG  HN2  "Carbohydrate core"  
23  GMT  H81  NDG  H81  "Carbohydrate core"  
24  GMT  H82  NDG  H82  "Carbohydrate core"  
25  GMT  H83  NDG  H83  "Carbohydrate core"  
26  GMT  H1   NDG  H1   "Carbohydrate core"  
27  GMT  H5   NDG  H5   "Carbohydrate core"  
28  GMT  H61  NDG  H61  "Carbohydrate core"  
29  GMT  H62  NDG  H62  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GMT  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GMT  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GMT  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GMT  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GMT  "Create component"          2015-08-06  RCSB  
GMT  "Initial release"           2016-09-07  RCSB  
GMT  "Other modification"        2020-07-03  RCSB  
GMT  "Modify parent residue"     2020-07-17  RCSB  
GMT  "Modify name"               2020-07-17  RCSB  
GMT  "Modify synonyms"           2020-07-17  RCSB  
GMT  "Modify internal type"      2020-07-17  RCSB  
GMT  "Modify linking type"       2020-07-17  RCSB  
GMT  "Modify atom id"            2020-07-17  RCSB  
GMT  "Modify component atom id"  2020-07-17  RCSB  
GMT  "Modify leaving atom flag"  2020-07-17  RCSB  
##
