data_EYT
# 
_chem_comp.id                                    EYT 
_chem_comp.name                                  
;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-bromanyl-5'-[3-oxidanylidene-3-(1,3-thiazol-2-ylamino)propoxy]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methyl dihydrogen phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 B Br N8 O10 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2018-05-04 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        740.265 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EYT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6GGT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EYT C2    C1  C  0  1 Y N N N N N 38.692 -46.211 6.238  2.787  0.575  3.385  C2    EYT 1  
EYT C4    C2  C  0  1 Y N N N N N 39.117 -44.446 7.704  1.222  2.012  2.507  C4    EYT 2  
EYT C5    C3  C  0  1 Y N N N N N 37.838 -44.718 8.378  1.666  3.014  3.386  C5    EYT 3  
EYT C6    C4  C  0  1 Y N N N N N 37.066 -45.764 7.899  2.715  2.707  4.268  C6    EYT 4  
EYT C8    C5  C  0  1 Y N N N N N 38.822 -43.030 9.339  0.057  3.858  2.202  C8    EYT 5  
EYT C10   C6  C  0  1 N N S N N N 43.006 -37.629 6.685  -3.527 -2.728 0.551  C10   EYT 6  
EYT N1    N1  N  0  1 Y N N N N N 37.517 -46.483 6.843  3.237  1.485  4.230  N1    EYT 7  
EYT C11   C7  C  0  1 Y N N N N N 44.281 -38.402 6.731  -2.210 -3.278 0.057  C11   EYT 8  
EYT C12   C8  C  0  1 Y N N N N N 44.051 -39.640 7.471  -1.316 -2.217 0.065  C12   EYT 9  
EYT O1    O1  O  0  1 N N N N N N 42.133 -38.385 7.537  -3.231 -1.483 1.207  O1    EYT 10 
EYT C13   C9  C  0  1 Y N N N N N 45.471 -38.089 6.195  -1.797 -4.526 -0.356 C13   EYT 11 
EYT N3    N2  N  0  1 Y N N N N N 39.492 -45.214 6.647  1.807  0.818  2.542  N3    EYT 12 
EYT C14   C10 C  0  1 Y N N N N N 46.499 -38.934 6.335  -0.488 -4.721 -0.765 C14   EYT 13 
EYT C15   C11 C  0  1 Y N N N N N 46.292 -40.181 7.088  0.404  -3.666 -0.760 C15   EYT 14 
EYT C16   C12 C  0  1 Y N N N N N 45.092 -40.481 7.630  -0.010 -2.408 -0.344 C16   EYT 15 
EYT C17   C13 C  0  1 N N N N N N 42.424 -37.624 5.265  -4.164 -3.705 1.542  C17   EYT 16 
EYT C20   C14 C  0  1 N N N N N N 46.167 -42.403 8.777  2.199  -1.641 -0.774 C20   EYT 17 
EYT C21   C15 C  0  1 N N N N N N 45.789 -43.509 9.757  3.033  -0.360 -0.698 C21   EYT 18 
EYT C22   C16 C  0  1 N N N N N N 44.886 -44.542 9.114  4.439  -0.648 -1.158 C22   EYT 19 
EYT OP3   O2  O  0  1 N N N N N N 43.552 -42.866 14.336 -5.267 4.809  -3.217 OP3   EYT 20 
EYT P     P1  P  0  1 N N N N N N 42.980 -43.706 13.220 -4.003 5.411  -2.423 P     EYT 21 
EYT OP1   O3  O  0  1 N N N N N N 41.893 -44.568 13.784 -3.180 6.398  -3.393 OP1   EYT 22 
EYT OP2   O4  O  0  1 N N N N N N 44.146 -44.523 12.800 -4.476 6.163  -1.240 OP2   EYT 23 
EYT "O5'" O5  O  0  1 N N N N N N 42.553 -42.505 12.277 -3.047 4.206  -1.946 "O5'" EYT 24 
EYT "C5'" C17 C  0  1 N N N N N N 41.733 -42.917 11.177 -3.453 3.220  -0.995 "C5'" EYT 25 
EYT "C4'" C18 C  0  1 N N R N N N 42.224 -42.292 9.875  -2.309 2.228  -0.769 "C4'" EYT 26 
EYT "C3'" C19 C  0  1 N N S N N N 41.487 -41.016 9.506  -2.776 1.096  0.162  "C3'" EYT 27 
EYT "C2'" C20 C  0  1 N N R N N N 40.921 -41.291 8.133  -1.749 1.120  1.337  "C2'" EYT 28 
EYT "C1'" C21 C  0  1 N N R N N N 40.963 -42.791 7.955  -0.570 1.912  0.723  "C1'" EYT 29 
EYT N9    N3  N  0  1 Y N N N N N 39.657 -43.405 8.329  0.208  2.573  1.774  N9    EYT 30 
EYT N6    N4  N  0  1 N N N N N N 35.880 -46.074 8.469  3.194  3.653  5.157  N6    EYT 31 
EYT N7    N5  N  0  1 Y N N N N N 37.722 -43.811 9.371  0.913  4.115  3.148  N7    EYT 32 
EYT "O4'" O6  O  0  1 N N N N N N 42.023 -43.232 8.798  -1.209 2.890  -0.123 "O4'" EYT 33 
EYT "O3'" O7  O  0  1 N N N N N N 42.362 -39.917 9.310  -2.474 -0.175 -0.462 "O3'" EYT 34 
EYT B     B1  B  -1 1 N N N N N N 42.662 -39.643 7.952  -2.113 -0.986 0.586  B     EYT 35 
EYT "O2'" O8  O  0  1 N N N N N N 41.847 -40.634 7.291  -1.357 -0.259 1.465  "O2'" EYT 36 
EYT N18   N6  N  0  1 N N N N N N 42.139 -38.993 4.770  -5.497 -3.217 1.923  N18   EYT 37 
EYT BR    BR1 BR 0  0 N N N N N N 45.747 -36.448 5.249  -3.015 -5.972 -0.363 BR    EYT 38 
EYT O19   O9  O  0  1 N N N N N N 44.987 -41.727 8.348  0.866  -1.368 -0.338 O19   EYT 39 
EYT O40   O10 O  0  1 N N N N N N 44.895 -44.736 7.904  4.744  -1.767 -1.511 O40   EYT 40 
EYT N23   N7  N  0  1 N N N N N N 44.113 -45.207 9.971  5.357  0.339  -1.176 N23   EYT 41 
EYT C41   C22 C  0  1 Y N N N N N 43.228 -46.132 9.606  6.654  0.073  -1.600 C41   EYT 42 
EYT N45   N8  N  0  1 Y N N N N N 42.430 -46.722 10.467 7.610  0.947  -1.656 N45   EYT 43 
EYT C44   C23 C  0  1 Y N N N N N 41.581 -47.817 10.025 8.783  0.521  -2.084 C44   EYT 44 
EYT C43   C24 C  0  1 Y N N N N N 41.719 -47.891 8.508  8.821  -0.773 -2.405 C43   EYT 45 
EYT S42   S1  S  0  1 Y N N N N N 42.955 -46.728 8.080  7.222  -1.454 -2.116 S42   EYT 46 
EYT H1    H1  H  0  1 N N N N N N 38.999 -46.815 5.397  3.243  -0.404 3.384  H1    EYT 47 
EYT H2    H2  H  0  1 N N N N N N 39.015 -42.216 10.022 -0.666 4.560  1.813  H2    EYT 48 
EYT H3    H3  H  0  1 N N N N N N 43.150 -36.601 7.048  -4.200 -2.557 -0.290 H3    EYT 49 
EYT H4    H4  H  0  1 N N N N N N 47.462 -38.705 5.904  -0.165 -5.699 -1.089 H4    EYT 50 
EYT H5    H5  H  0  1 N N N N N N 47.115 -40.869 7.210  1.424  -3.820 -1.080 H5    EYT 51 
EYT H6    H6  H  0  1 N N N N N N 43.147 -37.146 4.588  -4.256 -4.686 1.077  H6    EYT 52 
EYT H7    H7  H  0  1 N N N N N N 41.488 -37.047 5.268  -3.538 -3.781 2.431  H7    EYT 53 
EYT H8    H8  H  0  1 N N N N N N 46.676 -42.842 7.906  2.179  -2.001 -1.802 H8    EYT 54 
EYT H9    H9  H  0  1 N N N N N N 46.840 -41.688 9.272  2.643  -2.402 -0.132 H9    EYT 55 
EYT H10   H10 H  0  1 N N N N N N 46.707 -44.005 10.106 2.589  0.400  -1.340 H10   EYT 56 
EYT H11   H11 H  0  1 N N N N N N 45.265 -43.062 10.615 3.053  -0.001 0.331  H11   EYT 57 
EYT H12   H12 H  0  1 N N N N N N 44.469 -43.083 14.459 -5.031 4.302  -4.006 H12   EYT 58 
EYT H13   H13 H  0  1 N N N N N N 42.166 -45.478 13.762 -3.695 7.148  -3.719 H13   EYT 59 
EYT H14   H14 H  0  1 N N N N N N 40.696 -42.600 11.361 -3.703 3.706  -0.052 H14   EYT 60 
EYT H15   H15 H  0  1 N N N N N N 41.771 -44.013 11.089 -4.326 2.688  -1.373 H15   EYT 61 
EYT H16   H16 H  0  1 N N N N N N 43.296 -42.065 9.976  -1.986 1.813  -1.723 H16   EYT 62 
EYT H17   H17 H  0  1 N N N N N N 40.688 -40.797 10.229 -3.812 1.200  0.484  H17   EYT 63 
EYT H18   H18 H  0  1 N N N N N N 39.897 -40.902 8.034  -2.140 1.561  2.254  H18   EYT 64 
EYT H19   H19 H  0  1 N N N N N N 41.188 -43.023 6.904  0.068  1.253  0.134  H19   EYT 65 
EYT H20   H20 H  0  1 N N N N N N 35.473 -46.852 7.991  2.804  4.542  5.176  H20   EYT 66 
EYT H21   H21 H  0  1 N N N N N N 36.024 -46.311 9.430  3.919  3.429  5.761  H21   EYT 67 
EYT H22   H22 H  0  1 N N N N N N 41.763 -38.942 3.845  -5.938 -3.845 2.577  H22   EYT 68 
EYT H23   H23 H  0  1 N N N N N N 42.985 -39.525 4.756  -5.446 -2.281 2.297  H23   EYT 69 
EYT H25   H25 H  0  1 N N N N N N 44.203 -44.999 10.945 5.112  1.234  -0.893 H25   EYT 70 
EYT H26   H26 H  0  1 N N N N N N 40.972 -48.454 10.649 9.644  1.169  -2.168 H26   EYT 71 
EYT H27   H27 H  0  1 N N N N N N 41.167 -48.530 7.835  9.682  -1.311 -2.773 H27   EYT 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EYT N18   C17   SING N N 1  
EYT BR    C13   SING N N 2  
EYT C17   C10   SING N N 3  
EYT C13   C14   DOUB Y N 4  
EYT C13   C11   SING Y N 5  
EYT C2    N3    DOUB Y N 6  
EYT C2    N1    SING Y N 7  
EYT C14   C15   SING Y N 8  
EYT N3    C4    SING Y N 9  
EYT C10   C11   SING N N 10 
EYT C10   O1    SING N N 11 
EYT C11   C12   DOUB Y N 12 
EYT N1    C6    DOUB Y N 13 
EYT C15   C16   DOUB Y N 14 
EYT "O2'" B     SING N N 15 
EYT "O2'" "C2'" SING N N 16 
EYT C12   C16   SING Y N 17 
EYT C12   B     SING N N 18 
EYT O1    B     SING N N 19 
EYT C16   O19   SING N N 20 
EYT C4    N9    SING Y N 21 
EYT C4    C5    DOUB Y N 22 
EYT C6    C5    SING Y N 23 
EYT C6    N6    SING N N 24 
EYT O40   C22   DOUB N N 25 
EYT B     "O3'" SING N N 26 
EYT "C1'" "C2'" SING N N 27 
EYT "C1'" N9    SING N N 28 
EYT "C1'" "O4'" SING N N 29 
EYT S42   C43   SING Y N 30 
EYT S42   C41   SING Y N 31 
EYT "C2'" "C3'" SING N N 32 
EYT N9    C8    SING Y N 33 
EYT O19   C20   SING N N 34 
EYT C5    N7    SING Y N 35 
EYT C43   C44   DOUB Y N 36 
EYT C20   C21   SING N N 37 
EYT "O4'" "C4'" SING N N 38 
EYT C22   C21   SING N N 39 
EYT C22   N23   SING N N 40 
EYT "O3'" "C3'" SING N N 41 
EYT C8    N7    DOUB Y N 42 
EYT "C3'" "C4'" SING N N 43 
EYT C41   N23   SING N N 44 
EYT C41   N45   DOUB Y N 45 
EYT "C4'" "C5'" SING N N 46 
EYT C44   N45   SING Y N 47 
EYT "C5'" "O5'" SING N N 48 
EYT "O5'" P     SING N N 49 
EYT OP2   P     DOUB N N 50 
EYT P     OP1   SING N N 51 
EYT P     OP3   SING N N 52 
EYT C2    H1    SING N N 53 
EYT C8    H2    SING N N 54 
EYT C10   H3    SING N N 55 
EYT C14   H4    SING N N 56 
EYT C15   H5    SING N N 57 
EYT C17   H6    SING N N 58 
EYT C17   H7    SING N N 59 
EYT C20   H8    SING N N 60 
EYT C20   H9    SING N N 61 
EYT C21   H10   SING N N 62 
EYT C21   H11   SING N N 63 
EYT OP3   H12   SING N N 64 
EYT OP1   H13   SING N N 65 
EYT "C5'" H14   SING N N 66 
EYT "C5'" H15   SING N N 67 
EYT "C4'" H16   SING N N 68 
EYT "C3'" H17   SING N N 69 
EYT "C2'" H18   SING N N 70 
EYT "C1'" H19   SING N N 71 
EYT N6    H20   SING N N 72 
EYT N6    H21   SING N N 73 
EYT N18   H22   SING N N 74 
EYT N18   H23   SING N N 75 
EYT N23   H25   SING N N 76 
EYT C44   H26   SING N N 77 
EYT C43   H27   SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EYT InChI            InChI                1.03  "InChI=1S/C24H26BBrN8O10PS/c26-11-1-2-12(39-5-3-15(35)33-24-29-4-6-46-24)17-16(11)13(7-27)42-25(17)43-19-14(8-40-45(36,37)38)41-23(20(19)44-25)34-10-32-18-21(28)30-9-31-22(18)34/h1-2,4,6,9-10,13-14,19-20,23H,3,5,7-8,27H2,(H2,28,30,31)(H,29,33,35)(H2,36,37,38)/q-1/t13-,14-,19-,20-,23-,25+/m1/s1" 
EYT InChIKey         InChI                1.03  WVJYJHILOSTTGL-NCOZZQORSA-N                                                                                                                                                                                                                                                                             
EYT SMILES_CANONICAL CACTVS               3.385 "NC[C@H]1O[B-]2(O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16"                                                                                                                                                                                         
EYT SMILES           CACTVS               3.385 "NC[CH]1O[B-]2(O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16"                                                                                                                                                                                                 
EYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Br)OCCC(=O)Nc4nccs4)O[C@@H]5[C@H](O[C@H]([C@@H]5O2)n6cnc7c6ncnc7N)COP(=O)(O)O"                                                                                                                                                                                            
EYT SMILES           "OpenEye OEToolkits" 2.0.6 "[B-]12(c3c(ccc(c3C(O1)CN)Br)OCCC(=O)Nc4nccs4)OC5C(OC(C5O2)n6cnc7c6ncnc7N)COP(=O)(O)O"                                                                                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           EYT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        
;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-bromanyl-5'-[3-oxidanylidene-3-(1,3-thiazol-2-ylamino)propoxy]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methyl dihydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EYT "Create component" 2018-05-04 EBI  
EYT "Initial release"  2024-06-12 RCSB 
# 
