data_6UT
#

_chem_comp.id                                   6UT
_chem_comp.name                                 
;[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~
{S})-3-(1~{H}-indol-3-yl)-1-(methylamino)-1-oxidanylidene-propan-2-yl]phosphonamidic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H27 N8 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        L-Trp-G
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       562.472
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6UT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KMB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6UT  O3     O1   O  0  1  N  N  N  -31.235   3.104  -22.817   2.915  -3.337   0.605  O3     6UT   1  
6UT  N3     N1   N  0  1  N  N  N  -27.401   4.373  -31.844  -5.742   0.213  -1.121  N3     6UT   2  
6UT  O2     O2   O  0  1  N  N  N  -32.831   3.325  -24.882   2.328  -1.793   2.513  O2     6UT   3  
6UT  C2     C1   C  0  1  N  N  N  -26.836   4.174  -33.059  -7.051   0.141  -1.215  C2     6UT   4  
6UT  C1     C2   C  0  1  N  N  S  -32.713   6.278  -23.914   4.383  -0.900  -0.640  C1     6UT   5  
6UT  N2     N2   N  0  1  N  N  N  -25.493   4.295  -33.182  -7.694   0.903  -2.158  N2     6UT   6  
6UT  C5     C3   C  0  1  Y  N  N  -29.592   3.923  -32.827  -5.774  -1.361   0.648  C5     6UT   7  
6UT  N1     N3   N  0  1  N  N  N  -27.569   3.866  -34.161  -7.789  -0.667  -0.402  N1     6UT   8  
6UT  C4     C4   C  0  1  Y  N  N  -28.740   4.259  -31.685  -5.073  -0.511  -0.216  C4     6UT   9  
6UT  N4     N4   N  0  1  N  N  N  -31.524   5.473  -24.138   4.031  -0.897   0.786  N4     6UT  10  
6UT  C3     C5   C  0  1  N  N  N  -32.253   7.546  -23.235   4.963   0.463  -1.024  C3     6UT  11  
6UT  O19    O3   O  0  1  N  N  N  -32.759   6.942  -26.187   5.804  -2.669   0.008  O19    6UT  12  
6UT  C17    C6   C  0  1  N  N  N  -33.399   6.688  -25.182   5.407  -1.974  -0.903  C17    6UT  13  
6UT  N18    N5   N  0  1  N  N  N  -34.723   6.789  -25.135   5.880  -2.162  -2.150  N18    6UT  14  
6UT  C7     C7   C  0  1  Y  N  N  -33.372   8.522  -22.954   3.900   1.521  -0.877  C7     6UT  15  
6UT  C12    C8   C  0  1  Y  N  N  -33.967   9.449  -23.808   3.095   1.983  -1.846  C12    6UT  16  
6UT  N11    N6   N  0  1  Y  N  N  -34.942  10.151  -23.159   2.257   2.939  -1.340  N11    6UT  17  
6UT  C10    C9   C  0  1  Y  N  N  -35.046   9.754  -21.864   2.510   3.120   0.001  C10    6UT  18  
6UT  C16    C10  C  0  1  Y  N  N  -35.834  10.123  -20.784   1.962   3.948   0.976  C16    6UT  19  
6UT  C15    C11  C  0  1  Y  N  N  -35.653   9.481  -19.561   2.441   3.896   2.266  C15    6UT  20  
6UT  C14    C12  C  0  1  Y  N  N  -34.694   8.476  -19.379   3.468   3.025   2.605  C14    6UT  21  
6UT  C13    C13  C  0  1  Y  N  N  -33.880   8.064  -20.430   4.021   2.204   1.664  C13    6UT  22  
6UT  C9     C14  C  0  1  Y  N  N  -34.051   8.692  -21.657   3.546   2.236   0.351  C9     6UT  23  
6UT  P1     P1   P  0  1  N  N  N  -31.562   3.723  -24.162   2.651  -1.818   1.069  P1     6UT  24  
6UT  "O5'"  O4   O  0  1  N  N  N  -30.290   3.330  -25.070   1.418  -1.208   0.232  "O5'"  6UT  25  
6UT  "C5'"  C15  C  0  1  N  N  N  -30.427   3.166  -26.475   0.804   0.042   0.551  "C5'"  6UT  26  
6UT  "C4'"  C16  C  0  1  N  N  R  -29.409   4.061  -27.154  -0.329   0.320  -0.438  "C4'"  6UT  27  
6UT  "O4'"  O5   O  0  1  N  N  N  -29.321   3.606  -28.499  -1.386  -0.636  -0.252  "O4'"  6UT  28  
6UT  "C3'"  C17  C  0  1  N  N  S  -29.848   5.526  -27.208  -0.921   1.719  -0.177  "C3'"  6UT  29  
6UT  "O3'"  O6   O  0  1  N  N  N  -28.935   6.380  -26.492  -0.784   2.545  -1.335  "O3'"  6UT  30  
6UT  "C2'"  C18  C  0  1  N  N  R  -29.912   5.857  -28.692  -2.416   1.449   0.121  "C2'"  6UT  31  
6UT  "O2'"  O7   O  0  1  N  N  N  -29.413   7.160  -29.032  -3.247   2.430  -0.503  "O2'"  6UT  32  
6UT  "C1'"  C19  C  0  1  N  N  R  -29.092   4.736  -29.316  -2.628   0.050  -0.522  "C1'"  6UT  33  
6UT  N9     N7   N  0  1  Y  N  N  -29.563   4.403  -30.662  -3.751  -0.645   0.111  N9     6UT  34  
6UT  C8     C20  C  0  1  Y  N  N  -30.830   4.162  -31.049  -3.671  -1.544   1.135  C8     6UT  35  
6UT  N7     N8   N  0  1  Y  N  N  -30.863   3.872  -32.376  -4.861  -1.963   1.448  N7     6UT  36  
6UT  C6     C21  C  0  1  N  N  N  -28.916   3.724  -34.115  -7.183  -1.428   0.536  C6     6UT  37  
6UT  O6     O8   O  0  1  N  N  N  -29.651   3.416  -35.214  -7.834  -2.154   1.267  O6     6UT  38  
6UT  C11    C22  C  0  1  N  N  N  -35.466   7.402  -26.222   6.876  -3.206  -2.406  C11    6UT  39  
6UT  H1     H1   H  0  1  N  N  N  -31.922   2.494  -22.573   3.133  -3.430  -0.333  H1     6UT  40  
6UT  H2     H2   H  0  1  N  N  N  -33.421   5.745  -23.262   3.490  -1.095  -1.234  H2     6UT  41  
6UT  H3     H3   H  0  1  N  N  N  -24.937   4.527  -32.384  -7.182   1.483  -2.744  H3     6UT  42  
6UT  H4     H4   H  0  1  N  N  N  -25.057   4.152  -34.071  -8.659   0.861  -2.240  H4     6UT  43  
6UT  H5     H5   H  0  1  N  N  N  -27.099   3.740  -35.035  -8.754  -0.696  -0.498  H5     6UT  44  
6UT  H6     H6   H  0  1  N  N  N  -30.878   5.727  -23.418   3.913   0.045   1.128  H6     6UT  45  
6UT  H7     H7   H  0  1  N  N  N  -31.779   7.277  -22.280   5.803   0.698  -0.370  H7     6UT  46  
6UT  H8     H8   H  0  1  N  N  N  -31.515   8.040  -23.884   5.306   0.433  -2.058  H8     6UT  47  
6UT  H9     H9   H  0  1  N  N  N  -35.216   6.437  -24.339   5.563  -1.606  -2.879  H9     6UT  48  
6UT  H10    H10  H  0  1  N  N  N  -33.694   9.593  -24.843   3.106   1.650  -2.874  H10    6UT  49  
6UT  H11    H11  H  0  1  N  N  N  -35.504  10.862  -23.581   1.585   3.418  -1.850  H11    6UT  50  
6UT  H12    H12  H  0  1  N  N  N  -36.578  10.898  -20.890   1.163   4.629   0.722  H12    6UT  51  
6UT  H13    H13  H  0  1  N  N  N  -36.273   9.768  -18.725   2.015   4.539   3.022  H13    6UT  52  
6UT  H14    H14  H  0  1  N  N  N  -34.585   8.014  -18.409   3.833   2.997   3.622  H14    6UT  53  
6UT  H15    H15  H  0  1  N  N  N  -33.143   7.286  -20.297   4.820   1.529   1.935  H15    6UT  54  
6UT  H16    H16  H  0  1  N  N  N  -31.442   3.452  -26.787   0.401   0.001   1.563  H16    6UT  55  
6UT  H17    H17  H  0  1  N  N  N  -30.242   2.117  -26.748   1.546   0.838   0.487  H17    6UT  56  
6UT  H18    H18  H  0  1  N  N  N  -28.439   3.982  -26.641   0.047   0.263  -1.459  H18    6UT  57  
6UT  H19    H19  H  0  1  N  N  N  -30.858   5.610  -26.780  -0.437   2.184   0.682  H19    6UT  58  
6UT  H20    H20  H  0  1  N  N  N  -28.928   6.138  -25.573  -1.140   3.437  -1.226  H20    6UT  59  
6UT  H21    H21  H  0  1  N  N  N  -30.954   5.758  -29.029  -2.599   1.414   1.195  H21    6UT  60  
6UT  H22    H22  H  0  1  N  N  N  -29.954   7.824  -28.622  -3.086   3.333  -0.198  H22    6UT  61  
6UT  H23    H23  H  0  1  N  N  N  -28.028   5.014  -29.333  -2.789   0.142  -1.597  H23    6UT  62  
6UT  H24    H24  H  0  1  N  N  N  -31.693   4.194  -30.400  -2.755  -1.860   1.613  H24    6UT  63  
6UT  H25    H25  H  0  1  N  N  N  -36.541   7.386  -25.987   7.768  -3.011  -1.812  H25    6UT  64  
6UT  H26    H26  H  0  1  N  N  N  -35.135   8.443  -26.351   6.462  -4.177  -2.132  H26    6UT  65  
6UT  H27    H27  H  0  1  N  N  N  -35.285   6.842  -27.151   7.137  -3.208  -3.464  H27    6UT  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6UT  O6     C6     DOUB  N  N   1  
6UT  N1     C6     SING  N  N   2  
6UT  N1     C2     SING  N  N   3  
6UT  C6     C5     SING  N  N   4  
6UT  N2     C2     SING  N  N   5  
6UT  C2     N3     DOUB  N  N   6  
6UT  C5     N7     SING  Y  N   7  
6UT  C5     C4     DOUB  Y  N   8  
6UT  N7     C8     DOUB  Y  N   9  
6UT  N3     C4     SING  N  N  10  
6UT  C4     N9     SING  Y  N  11  
6UT  C8     N9     SING  Y  N  12  
6UT  N9     "C1'"  SING  N  N  13  
6UT  "C1'"  "C2'"  SING  N  N  14  
6UT  "C1'"  "O4'"  SING  N  N  15  
6UT  "O2'"  "C2'"  SING  N  N  16  
6UT  "C2'"  "C3'"  SING  N  N  17  
6UT  "O4'"  "C4'"  SING  N  N  18  
6UT  "C3'"  "C4'"  SING  N  N  19  
6UT  "C3'"  "O3'"  SING  N  N  20  
6UT  "C4'"  "C5'"  SING  N  N  21  
6UT  "C5'"  "O5'"  SING  N  N  22  
6UT  C11    N18    SING  N  N  23  
6UT  O19    C17    DOUB  N  N  24  
6UT  C17    N18    SING  N  N  25  
6UT  C17    C1     SING  N  N  26  
6UT  "O5'"  P1     SING  N  N  27  
6UT  O2     P1     DOUB  N  N  28  
6UT  P1     N4     SING  N  N  29  
6UT  P1     O3     SING  N  N  30  
6UT  N4     C1     SING  N  N  31  
6UT  C1     C3     SING  N  N  32  
6UT  C12    N11    SING  Y  N  33  
6UT  C12    C7     DOUB  Y  N  34  
6UT  C3     C7     SING  N  N  35  
6UT  N11    C10    SING  Y  N  36  
6UT  C7     C9     SING  Y  N  37  
6UT  C10    C9     DOUB  Y  N  38  
6UT  C10    C16    SING  Y  N  39  
6UT  C9     C13    SING  Y  N  40  
6UT  C16    C15    DOUB  Y  N  41  
6UT  C13    C14    DOUB  Y  N  42  
6UT  C15    C14    SING  Y  N  43  
6UT  O3     H1     SING  N  N  44  
6UT  C1     H2     SING  N  N  45  
6UT  N2     H3     SING  N  N  46  
6UT  N2     H4     SING  N  N  47  
6UT  N1     H5     SING  N  N  48  
6UT  N4     H6     SING  N  N  49  
6UT  C3     H7     SING  N  N  50  
6UT  C3     H8     SING  N  N  51  
6UT  N18    H9     SING  N  N  52  
6UT  C12    H10    SING  N  N  53  
6UT  N11    H11    SING  N  N  54  
6UT  C16    H12    SING  N  N  55  
6UT  C15    H13    SING  N  N  56  
6UT  C14    H14    SING  N  N  57  
6UT  C13    H15    SING  N  N  58  
6UT  "C5'"  H16    SING  N  N  59  
6UT  "C5'"  H17    SING  N  N  60  
6UT  "C4'"  H18    SING  N  N  61  
6UT  "C3'"  H19    SING  N  N  62  
6UT  "O3'"  H20    SING  N  N  63  
6UT  "C2'"  H21    SING  N  N  64  
6UT  "O2'"  H22    SING  N  N  65  
6UT  "C1'"  H23    SING  N  N  66  
6UT  C8     H24    SING  N  N  67  
6UT  C11    H25    SING  N  N  68  
6UT  C11    H26    SING  N  N  69  
6UT  C11    H27    SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6UT  InChI             InChI                 1.03   "InChI=1S/C22H27N8O8P/c1-24-19(33)13(6-10-7-25-12-5-3-2-4-11(10)12)29-39(35,36)37-8-14-16(31)17(32)21(38-14)30-9-26-15-18(30)27-22(23)28-20(15)34/h2-5,7,9,13-14,16-17,21,25,31-32H,6,8H2,1H3,(H,24,33)(H2,29,35,36)(H3,23,27,28,34)/t13-,14+,16+,17+,21+/m0/s1"  
6UT  InChIKey          InChI                 1.03   RVXFFUUVRZGQHL-QMBVYZDCSA-N  
6UT  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)[C@H](Cc1c[nH]c2ccccc12)N[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=O)NC(=Nc45)N"  
6UT  SMILES            CACTVS                3.385  "CNC(=O)[CH](Cc1c[nH]c2ccccc12)N[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=O)NC(=Nc45)N"  
6UT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CNC(=O)[C@H](Cc1c[nH]c2c1cccc2)NP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4N=C(NC5=O)N)O)O"  
6UT  SMILES            "OpenEye OEToolkits"  2.0.5  "CNC(=O)C(Cc1c[nH]c2c1cccc2)NP(=O)(O)OCC3C(C(C(O3)n4cnc5c4N=C(NC5=O)N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6UT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{S})-3-(1~{H}-indol-3-yl)-1-(methylamino)-1-oxidanylidene-propan-2-yl]phosphonamidic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6UT  "Create component"  2016-06-28  RCSB  
6UT  "Initial release"   2017-06-28  RCSB  
6UT  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6UT
_pdbx_chem_comp_synonyms.name        L-Trp-G
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
