data_5LT
#

_chem_comp.id                                   5LT
_chem_comp.name                                 "3,4-di-O-sulfo-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O12 S2"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-20
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       340.282
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5LT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5LT  C1   C1   C  0  1  N  N  S  102.361   98.162  -37.366  -0.168  -2.931  -0.427  C1   5LT   1  
5LT  C2   C2   C  0  1  N  N  R  103.327   99.254  -36.889   0.789  -1.826  -0.881  C2   5LT   2  
5LT  O2   O2   O  0  1  N  N  N  104.625   98.714  -36.715   2.138  -2.263  -0.709  O2   5LT   3  
5LT  C3   C3   C  0  1  N  N  R  102.813   99.829  -35.564   0.545  -0.572  -0.036  C3   5LT   4  
5LT  O3   O3   O  0  1  N  N  N  101.557  100.463  -35.778   1.384   0.488  -0.501  O3   5LT   5  
5LT  C4   C4   C  0  1  N  N  R  102.650   98.697  -34.540  -0.924  -0.158  -0.167  C4   5LT   6  
5LT  O4   O4   O  0  1  N  N  N  103.929   98.144  -34.234  -1.180   0.968   0.674  O4   5LT   7  
5LT  C5   C5   C  0  1  N  N  R  101.734   97.597  -35.113  -1.815  -1.328   0.259  C5   5LT   8  
5LT  O5   O5   O  0  1  N  N  N  102.257   97.122  -36.377  -1.516  -2.471  -0.545  O5   5LT   9  
5LT  C6   C6   C  0  1  N  N  N  100.276   98.016  -35.345  -3.284  -0.944   0.074  C6   5LT  10  
5LT  O6   O6   O  0  1  N  N  N   99.601   97.122  -36.211  -4.117  -1.994   0.570  O6   5LT  11  
5LT  S1   S1   S  0  1  N  N  N  101.674  101.958  -35.947   2.694   0.621   0.262  S1   5LT  12  
5LT  S2   S2   S  0  1  N  N  N  104.088   97.806  -32.768  -1.350   2.279  -0.081  S2   5LT  13  
5LT  O13  O13  O  0  1  N  N  N  102.345  102.554  -34.736   3.599  -0.513  -0.197  O13  5LT  14  
5LT  O11  O11  O  0  1  N  N  N  102.488  102.268  -37.176   3.300   1.825  -0.188  O11  5LT  15  
5LT  O12  O12  O  0  1  N  N  N  100.296  102.551  -36.099   2.392   0.366   1.627  O12  5LT  16  
5LT  O23  O23  O  0  1  N  N  N  103.959   99.061  -31.943  -2.711   2.234  -0.759  O23  5LT  17  
5LT  O21  O21  O  0  1  N  N  N  105.449   97.197  -32.540  -1.425   3.302   0.903  O21  5LT  18  
5LT  O22  O22  O  0  1  N  N  N  103.025   96.819  -32.355  -0.382   2.271  -1.121  O22  5LT  19  
5LT  H1   H1   H  0  1  N  N  N  101.373   98.620  -37.524  -0.029  -3.812  -1.053  H1   5LT  20  
5LT  H2   H2   H  0  1  N  N  N  103.346  100.059  -37.638   0.610  -1.598  -1.931  H2   5LT  21  
5LT  HO2  HO2  H  0  1  N  Y  N  105.216   99.397  -36.420   2.362  -3.058  -1.212  HO2  5LT  22  
5LT  H3   H3   H  0  1  N  N  N  103.548  100.552  -35.181   0.774  -0.786   1.009  H3   5LT  23  
5LT  H4   H4   H  0  1  N  N  N  102.184   99.106  -33.631  -1.137   0.104  -1.203  H4   5LT  24  
5LT  H5   H5   H  0  1  N  N  N  101.731   96.762  -34.397  -1.630  -1.563   1.308  H5   5LT  25  
5LT  H61  H61  H  0  1  N  N  N   99.754   98.036  -34.377  -3.491  -0.025   0.624  H61  5LT  26  
5LT  H62  H62  H  0  1  N  N  N  100.262   99.022  -35.791  -3.488  -0.788  -0.985  H62  5LT  27  
5LT  O1   O1   O  0  1  N  Y  N  102.822   97.596  -38.542   0.103  -3.267   0.936  O1   5LT  28  
5LT  HO1  HO1  H  0  1  N  Y  N  102.898   98.268  -39.209  -0.468  -3.962   1.291  HO1  5LT  29  
5LT  HO6  HO6  H  0  1  N  Y  N   98.704   97.413  -36.331  -5.064  -1.818   0.485  HO6  5LT  30  
5LT  H13  H13  H  0  1  N  N  N  103.141  103.000  -35.002   4.467  -0.521   0.230  H13  5LT  31  
5LT  H23  H23  H  0  1  N  N  N  104.761   99.203  -31.454  -2.922   3.026  -1.272  H23  5LT  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5LT  C1   O5   SING  N  N   1  
5LT  C1   C2   SING  N  N   2  
5LT  C2   C3   SING  N  N   3  
5LT  C2   O2   SING  N  N   4  
5LT  C3   O3   SING  N  N   5  
5LT  C3   C4   SING  N  N   6  
5LT  O3   S1   SING  N  N   7  
5LT  C4   C5   SING  N  N   8  
5LT  C4   O4   SING  N  N   9  
5LT  O4   S2   SING  N  N  10  
5LT  C5   O5   SING  N  N  11  
5LT  C5   C6   SING  N  N  12  
5LT  C6   O6   SING  N  N  13  
5LT  S1   O12  DOUB  N  N  14  
5LT  S1   O11  DOUB  N  N  15  
5LT  S1   O13  SING  N  N  16  
5LT  S2   O22  DOUB  N  N  17  
5LT  S2   O21  DOUB  N  N  18  
5LT  S2   O23  SING  N  N  19  
5LT  C1   H1   SING  N  N  20  
5LT  C2   H2   SING  N  N  21  
5LT  O2   HO2  SING  N  N  22  
5LT  C3   H3   SING  N  N  23  
5LT  C4   H4   SING  N  N  24  
5LT  C5   H5   SING  N  N  25  
5LT  C6   H61  SING  N  N  26  
5LT  C6   H62  SING  N  N  27  
5LT  C1   O1   SING  N  N  28  
5LT  O1   HO1  SING  N  N  29  
5LT  O6   HO6  SING  N  N  30  
5LT  O13  H13  SING  N  N  31  
5LT  O23  H23  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5LT  SMILES            ACDLabs               12.01  "C1(OC(C(C(C1O)OS(=O)(=O)O)OS(=O)(=O)O)CO)O"  
5LT  InChI             InChI                 1.03   "InChI=1S/C6H12O12S2/c7-1-2-4(17-19(10,11)12)5(18-20(13,14)15)3(8)6(9)16-2/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3-,4-,5-,6+/m1/s1"  
5LT  InChIKey          InChI                 1.03   XJBNSSXIWQSGRE-UKFBFLRUSA-N  
5LT  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O[S](O)(=O)=O)[C@@H]1O[S](O)(=O)=O"  
5LT  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O[S](O)(=O)=O"  
5LT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)OS(=O)(=O)O)OS(=O)(=O)O)O"  
5LT  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C1C(C(C(C(O1)O)O)OS(=O)(=O)O)OS(=O)(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5LT  "SYSTEMATIC NAME"  ACDLabs               12.01  "3,4-di-O-sulfo-alpha-D-glucopyranose"  
5LT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-5,6-bis(oxidanyl)-3-sulfooxy-oxan-4-yl] hydrogen sulfate"  
#
_pdbx_chem_comp_related.comp_id            5LT
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5LT  C1   GLC  C1   "Carbohydrate core"  
 2  5LT  C2   GLC  C2   "Carbohydrate core"  
 3  5LT  C3   GLC  C3   "Carbohydrate core"  
 4  5LT  C4   GLC  C4   "Carbohydrate core"  
 5  5LT  C5   GLC  C5   "Carbohydrate core"  
 6  5LT  C6   GLC  C6   "Carbohydrate core"  
 7  5LT  O1   GLC  O1   "Carbohydrate core"  
 8  5LT  O2   GLC  O2   "Carbohydrate core"  
 9  5LT  O3   GLC  O3   "Carbohydrate core"  
10  5LT  O4   GLC  O4   "Carbohydrate core"  
11  5LT  O5   GLC  O5   "Carbohydrate core"  
12  5LT  O6   GLC  O6   "Carbohydrate core"  
13  5LT  H1   GLC  H1   "Carbohydrate core"  
14  5LT  H2   GLC  H2   "Carbohydrate core"  
15  5LT  H3   GLC  H3   "Carbohydrate core"  
16  5LT  H4   GLC  H4   "Carbohydrate core"  
17  5LT  H5   GLC  H5   "Carbohydrate core"  
18  5LT  H61  GLC  H61  "Carbohydrate core"  
19  5LT  H62  GLC  H62  "Carbohydrate core"  
20  5LT  HO1  GLC  HO1  "Carbohydrate core"  
21  5LT  HO2  GLC  HO2  "Carbohydrate core"  
22  5LT  HO6  GLC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5LT  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5LT  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5LT  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
5LT  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5LT  "Create component"          2015-10-20  RCSB  
5LT  "Modify atom id"            2020-05-08  RCSB  
5LT  "Modify component atom id"  2020-07-17  RCSB  
5LT  "Initial release"           2020-07-29  RCSB  
##
