data_YPS
#

_chem_comp.id                                   YPS
_chem_comp.name                                 "(1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H38 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-19
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       410.592
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YPS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M2D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YPS  C25  C1   C  0  1  N  N  N  -44.128  13.790   -7.308  -0.133   0.579   1.710  C25  YPS   1  
YPS  C24  C2   C  0  1  N  N  R  -44.596  12.360   -6.981  -1.573   0.412   2.200  C24  YPS   2  
YPS  C23  C3   C  0  1  N  N  N  -45.435  12.369   -5.693  -2.461   1.470   1.542  C23  YPS   3  
YPS  C18  C4   C  0  1  Y  N  N  -49.118  11.247  -11.689  -3.449  -5.047  -0.733  C18  YPS   4  
YPS  C19  C5   C  0  1  Y  N  N  -47.902  11.852  -11.934  -4.101  -3.924  -1.208  C19  YPS   5  
YPS  C17  C6   C  0  1  Y  N  N  -49.548  11.106  -10.377  -2.343  -4.909   0.085  C17  YPS   6  
YPS  C16  C7   C  0  1  Y  N  N  -48.773  11.573   -9.332  -1.885  -3.648   0.421  C16  YPS   7  
YPS  C15  C8   C  0  1  Y  N  N  -47.542  12.192   -9.560  -2.534  -2.526  -0.059  C15  YPS   8  
YPS  C11  C9   C  0  1  N  N  R  -45.357  14.683   -7.511  -0.088   0.409   0.190  C11  YPS   9  
YPS  C12  C10  C  0  1  N  N  N  -46.212  14.132   -8.673  -0.595  -0.985  -0.182  C12  YPS  10  
YPS  C10  C11  C  0  1  N  N  N  -42.196  18.199   -8.032   4.411  -1.429  -0.193  C10  YPS  11  
YPS  C02  C12  C  0  1  N  N  N  -45.055  16.141   -7.844   1.330   0.574  -0.292  C02  YPS  12  
YPS  C04  C13  C  0  1  N  N  N  -43.647  18.123   -7.535   3.674  -0.094  -0.312  C04  YPS  13  
YPS  C05  C14  C  0  1  N  N  N  -43.842  18.998   -6.285   4.384   0.959   0.542  C05  YPS  14  
YPS  C06  C15  C  0  1  N  N  N  -43.406  20.444   -6.551   5.823   1.126   0.052  C06  YPS  15  
YPS  C07  C16  C  0  1  N  N  N  -41.938  20.510   -7.006   6.561  -0.209   0.171  C07  YPS  16  
YPS  C09  C17  C  0  1  N  N  N  -41.741  19.652   -8.268   5.851  -1.262  -0.682  C09  YPS  17  
YPS  C13  C18  C  0  1  N  N  R  -46.693  12.693   -8.380  -2.035  -1.152   0.308  C13  YPS  18  
YPS  C14  C19  C  0  1  N  N  N  -45.443  11.815   -8.148  -2.079  -0.983   1.827  C14  YPS  19  
YPS  C20  C20  C  0  1  Y  N  N  -47.127  12.316  -10.881  -3.647  -2.664  -0.867  C20  YPS  20  
YPS  C21  C21  C  0  1  N  N  N  -47.514  12.706   -7.066  -2.923  -0.095  -0.350  C21  YPS  21  
YPS  C22  C22  C  0  1  N  N  S  -46.673  13.255   -5.895  -2.416   1.300   0.022  C22  YPS  22  
YPS  C26  C23  C  0  1  N  N  N  -47.505  13.282   -4.615  -3.305   2.358  -0.636  C26  YPS  23  
YPS  C28  C24  C  0  1  N  N  N  -48.831  11.822   -3.197  -3.596   4.727  -0.854  C28  YPS  24  
YPS  C29  C25  C  0  1  N  N  N  -49.194  10.345   -3.090  -3.002   6.068  -0.417  C29  YPS  25  
YPS  C30  C26  C  0  1  N  N  N  -46.211  14.682   -6.224  -0.976   1.467  -0.468  C30  YPS  26  
YPS  N03  N1   N  0  1  N  N  N  -43.990  16.719   -7.259   2.295  -0.254   0.157  N03  YPS  27  
YPS  N08  N2   N  0  1  N  N  N  -41.594  21.907   -7.329   7.943  -0.049  -0.299  N08  YPS  28  
YPS  O01  O1   O  0  1  N  N  N  -45.775  16.751   -8.629   1.604   1.451  -1.084  O01  YPS  29  
YPS  O27  O2   O  0  1  N  N  N  -48.003  11.959   -4.364  -2.831   3.661  -0.288  O27  YPS  30  
YPS  H1   H1   H  0  1  N  N  N  -43.524  13.779   -8.227   0.228   1.573   1.975  H1   YPS  31  
YPS  H2   H2   H  0  1  N  N  N  -43.523  14.179   -6.476   0.500  -0.174   2.179  H2   YPS  32  
YPS  H3   H3   H  0  1  N  N  N  -43.717  11.714   -6.838  -1.605   0.533   3.283  H3   YPS  33  
YPS  H4   H4   H  0  1  N  N  N  -45.753  11.343   -5.455  -3.487   1.351   1.891  H4   YPS  34  
YPS  H5   H5   H  0  1  N  N  N  -44.831  12.767   -4.864  -2.100   2.464   1.807  H5   YPS  35  
YPS  H6   H6   H  0  1  N  N  N  -49.726  10.888  -12.506  -3.807  -6.031  -0.995  H6   YPS  36  
YPS  H7   H7   H  0  1  N  N  N  -47.552  11.965  -12.950  -4.966  -4.032  -1.847  H7   YPS  37  
YPS  H8   H8   H  0  1  N  N  N  -50.494  10.628  -10.171  -1.838  -5.785   0.462  H8   YPS  38  
YPS  H9   H9   H  0  1  N  N  N  -49.127  11.457   -8.318  -1.022  -3.540   1.061  H9   YPS  39  
YPS  H10  H10  H  0  1  N  N  N  -45.608  14.128   -9.592  -0.563  -1.106  -1.265  H10  YPS  40  
YPS  H11  H11  H  0  1  N  N  N  -47.089  14.782   -8.813   0.038  -1.739   0.287  H11  YPS  41  
YPS  H12  H12  H  0  1  N  N  N  -42.115  17.644   -8.978   4.416  -1.749   0.849  H12  YPS  42  
YPS  H13  H13  H  0  1  N  N  N  -41.539  17.739   -7.280   3.905  -2.179  -0.801  H13  YPS  43  
YPS  H14  H14  H  0  1  N  N  N  -44.305  18.505   -8.330   3.668   0.227  -1.354  H14  YPS  44  
YPS  H15  H15  H  0  1  N  N  N  -44.905  18.989   -6.002   3.858   1.910   0.457  H15  YPS  45  
YPS  H16  H16  H  0  1  N  N  N  -43.240  18.587   -5.461   4.389   0.639   1.583  H16  YPS  46  
YPS  H17  H17  H  0  1  N  N  N  -43.521  21.029   -5.627   5.818   1.446  -0.990  H17  YPS  47  
YPS  H18  H18  H  0  1  N  N  N  -44.045  20.872   -7.338   6.329   1.876   0.660  H18  YPS  48  
YPS  H19  H19  H  0  1  N  N  N  -41.288  20.133   -6.202   6.566  -0.530   1.213  H19  YPS  49  
YPS  H20  H20  H  0  1  N  N  N  -40.675  19.654   -8.540   6.376  -2.213  -0.597  H20  YPS  50  
YPS  H21  H21  H  0  1  N  N  N  -42.331  20.083   -9.090   5.845  -0.942  -1.724  H21  YPS  51  
YPS  H22  H22  H  0  1  N  N  N  -45.762  10.789   -7.913  -1.447  -1.736   2.296  H22  YPS  52  
YPS  H23  H23  H  0  1  N  N  N  -44.833  11.808   -9.063  -3.105  -1.102   2.176  H23  YPS  53  
YPS  H24  H24  H  0  1  N  N  N  -46.178  12.785  -11.093  -4.156  -1.788  -1.239  H24  YPS  54  
YPS  H25  H25  H  0  1  N  N  N  -48.401  13.343   -7.202  -2.891  -0.216  -1.433  H25  YPS  55  
YPS  H26  H26  H  0  1  N  N  N  -47.832  11.680   -6.830  -3.949  -0.214  -0.002  H26  YPS  56  
YPS  H27  H27  H  0  1  N  N  N  -46.878  13.608   -3.772  -3.273   2.237  -1.719  H27  YPS  57  
YPS  H28  H28  H  0  1  N  N  N  -48.348  13.978   -4.736  -4.330   2.239  -0.287  H28  YPS  58  
YPS  H29  H29  H  0  1  N  N  N  -48.280  12.143   -2.301  -4.628   4.657  -0.510  H29  YPS  59  
YPS  H30  H30  H  0  1  N  N  N  -49.742  12.430   -3.305  -3.570   4.655  -1.941  H30  YPS  60  
YPS  H31  H31  H  0  1  N  N  N  -49.831  10.186   -2.207  -3.028   6.140   0.670  H31  YPS  61  
YPS  H32  H32  H  0  1  N  N  N  -49.737  10.035   -3.995  -1.970   6.138  -0.762  H32  YPS  62  
YPS  H33  H33  H  0  1  N  N  N  -48.275   9.748   -2.991  -3.585   6.881  -0.849  H33  YPS  63  
YPS  H34  H34  H  0  1  N  N  N  -45.610  15.071   -5.389  -0.615   2.461  -0.202  H34  YPS  64  
YPS  H35  H35  H  0  1  N  N  N  -47.092  15.324   -6.372  -0.945   1.346  -1.550  H35  YPS  65  
YPS  H36  H36  H  0  1  N  N  N  -43.424  16.188   -6.629   2.076  -0.955   0.790  H36  YPS  66  
YPS  H37  H37  H  0  1  N  N  N  -41.717  22.477   -6.517   8.452  -0.918  -0.230  H37  YPS  67  
YPS  H38  H38  H  0  1  N  N  N  -40.641  21.955   -7.628   7.965   0.309  -1.242  H38  YPS  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YPS  C19  C18  DOUB  Y  N   1  
YPS  C19  C20  SING  Y  N   2  
YPS  C18  C17  SING  Y  N   3  
YPS  C20  C15  DOUB  Y  N   4  
YPS  C17  C16  DOUB  Y  N   5  
YPS  C15  C16  SING  Y  N   6  
YPS  C15  C13  SING  N  N   7  
YPS  C12  C13  SING  N  N   8  
YPS  C12  C11  SING  N  N   9  
YPS  O01  C02  DOUB  N  N  10  
YPS  C13  C14  SING  N  N  11  
YPS  C13  C21  SING  N  N  12  
YPS  C09  C10  SING  N  N  13  
YPS  C09  C07  SING  N  N  14  
YPS  C14  C24  SING  N  N  15  
YPS  C10  C04  SING  N  N  16  
YPS  C02  C11  SING  N  N  17  
YPS  C02  N03  SING  N  N  18  
YPS  C04  N03  SING  N  N  19  
YPS  C04  C05  SING  N  N  20  
YPS  C11  C25  SING  N  N  21  
YPS  C11  C30  SING  N  N  22  
YPS  N08  C07  SING  N  N  23  
YPS  C25  C24  SING  N  N  24  
YPS  C21  C22  SING  N  N  25  
YPS  C07  C06  SING  N  N  26  
YPS  C24  C23  SING  N  N  27  
YPS  C06  C05  SING  N  N  28  
YPS  C30  C22  SING  N  N  29  
YPS  C22  C23  SING  N  N  30  
YPS  C22  C26  SING  N  N  31  
YPS  C26  O27  SING  N  N  32  
YPS  O27  C28  SING  N  N  33  
YPS  C28  C29  SING  N  N  34  
YPS  C25  H1   SING  N  N  35  
YPS  C25  H2   SING  N  N  36  
YPS  C24  H3   SING  N  N  37  
YPS  C23  H4   SING  N  N  38  
YPS  C23  H5   SING  N  N  39  
YPS  C18  H6   SING  N  N  40  
YPS  C19  H7   SING  N  N  41  
YPS  C17  H8   SING  N  N  42  
YPS  C16  H9   SING  N  N  43  
YPS  C12  H10  SING  N  N  44  
YPS  C12  H11  SING  N  N  45  
YPS  C10  H12  SING  N  N  46  
YPS  C10  H13  SING  N  N  47  
YPS  C04  H14  SING  N  N  48  
YPS  C05  H15  SING  N  N  49  
YPS  C05  H16  SING  N  N  50  
YPS  C06  H17  SING  N  N  51  
YPS  C06  H18  SING  N  N  52  
YPS  C07  H19  SING  N  N  53  
YPS  C09  H20  SING  N  N  54  
YPS  C09  H21  SING  N  N  55  
YPS  C14  H22  SING  N  N  56  
YPS  C14  H23  SING  N  N  57  
YPS  C20  H24  SING  N  N  58  
YPS  C21  H25  SING  N  N  59  
YPS  C21  H26  SING  N  N  60  
YPS  C26  H27  SING  N  N  61  
YPS  C26  H28  SING  N  N  62  
YPS  C28  H29  SING  N  N  63  
YPS  C28  H30  SING  N  N  64  
YPS  C29  H31  SING  N  N  65  
YPS  C29  H32  SING  N  N  66  
YPS  C29  H33  SING  N  N  67  
YPS  C30  H34  SING  N  N  68  
YPS  C30  H35  SING  N  N  69  
YPS  N03  H36  SING  N  N  70  
YPS  N08  H37  SING  N  N  71  
YPS  N08  H38  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YPS  SMILES            ACDLabs               12.01  "O=C(NC1CCC(N)CC1)C12CC3CC(CC(COCC)(C3)C1)(C2)c1ccccc1"  
YPS  InChI             InChI                 1.03   "InChI=1S/C26H38N2O2/c1-2-30-18-24-12-19-13-25(15-24,20-6-4-3-5-7-20)17-26(14-19,16-24)23(29)28-22-10-8-21(27)9-11-22/h3-7,19,21-22H,2,8-18,27H2,1H3,(H,28,29)/t19-,21-,22-,24-,25+,26-/m0/s1"  
YPS  InChIKey          InChI                 1.03   QUVAMRWCRBWKIJ-OKWRYAMFSA-N  
YPS  SMILES_CANONICAL  CACTVS                3.385  "CCOC[C@]12C[C@@H]3C[C@](C1)(C[C@@](C3)(C2)c4ccccc4)C(=O)N[C@H]5CC[C@H](N)CC5"  
YPS  SMILES            CACTVS                3.385  "CCOC[C]12C[CH]3C[C](C1)(C[C](C3)(C2)c4ccccc4)C(=O)N[CH]5CC[CH](N)CC5"  
YPS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCOC[C@@]12C[C@H]3C[C@@](C1)(C[C@](C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5"  
YPS  SMILES            "OpenEye OEToolkits"  2.0.7  "CCOCC12CC3CC(C1)(CC(C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YPS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide"  
YPS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},3~{S},5~{R},7~{R})-~{N}-(4-azanylcyclohexyl)-3-(ethoxymethyl)-5-phenyl-adamantane-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YPS  "Create component"  2021-03-19  RCSB  
YPS  "Initial release"   2021-11-24  RCSB  
##
