data_Y2S
# 
_chem_comp.id                                    Y2S 
_chem_comp.name                                  "5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 F3 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-01 
_chem_comp.pdbx_modified_date                    2023-08-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        489.530 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LJQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2S C14 C1  C 0 1 N N N -32.163 7.431  22.161 -1.552  0.054  -0.712 C14 Y2S 1  
Y2S C5  C2  C 0 1 N N N -31.393 0.636  23.078 -8.142  0.133  1.093  C5  Y2S 2  
Y2S C6  C3  C 0 1 Y N N -31.924 2.010  22.737 -7.283  0.024  -0.140 C6  Y2S 3  
Y2S C11 C4  C 0 1 Y N N -32.883 2.082  21.745 -7.798  -0.541 -1.293 C11 Y2S 4  
Y2S C7  C5  C 0 1 Y N N -31.559 3.164  23.417 -5.983  0.493  -0.122 C7  Y2S 5  
Y2S C8  C6  C 0 1 Y N N -32.140 4.377  23.061 -5.195  0.390  -1.253 C8  Y2S 6  
Y2S C9  C7  C 0 1 Y N N -33.088 4.439  22.058 -5.707  -0.180 -2.403 C9  Y2S 7  
Y2S C10 C8  C 0 1 Y N N -33.461 3.287  21.398 -7.010  -0.643 -2.424 C10 Y2S 8  
Y2S C12 C9  C 0 1 N N N -31.756 5.652  23.762 -3.777  0.901  -1.232 C12 Y2S 9  
Y2S N2  N1  N 0 1 N N N -29.320 0.429  24.437 -9.716  1.764  2.085  N2  Y2S 10 
Y2S C3  C10 C 0 1 N N N -29.910 0.462  23.222 -8.882  1.446  1.075  C3  Y2S 11 
Y2S C1  C11 C 0 1 N N N -30.093 0.602  25.667 -10.436 3.039  2.067  C1  Y2S 12 
Y2S O4  O1  O 0 1 N N N -29.252 0.302  22.220 -8.728  2.216  0.151  O4  Y2S 13 
Y2S N13 N2  N 0 1 N N N -32.556 6.789  23.278 -2.877  -0.174 -0.806 N13 Y2S 14 
Y2S O15 O2  O 0 1 N N N -31.165 7.043  21.585 -1.104  1.151  -0.982 O15 Y2S 15 
Y2S C16 C12 C 0 1 Y N N -32.908 8.598  21.635 -0.644  -1.030 -0.276 C16 Y2S 16 
Y2S N17 N3  N 0 1 Y N N -34.146 8.857  22.040 -1.144  -2.225 0.021  N17 Y2S 17 
Y2S C18 C13 C 0 1 Y N N -34.822 9.895  21.589 -0.382  -3.221 0.413  C18 Y2S 18 
Y2S C19 C14 C 0 1 Y N N -34.263 10.775 20.666 0.994   -3.064 0.534  C19 Y2S 19 
Y2S C20 C15 C 0 1 Y N N -32.949 10.546 20.222 1.568   -1.818 0.230  C20 Y2S 20 
Y2S C21 C16 C 0 1 Y N N -32.274 9.430  20.717 0.723   -0.787 -0.189 C21 Y2S 21 
Y2S C22 C17 C 0 1 N N N -32.292 11.428 19.232 3.026   -1.606 0.344  C22 Y2S 22 
Y2S C23 C18 C 0 1 N N N -31.033 11.175 18.917 3.548   -0.423 0.052  C23 Y2S 23 
Y2S C24 C19 C 0 1 N N N -30.256 11.981 17.910 5.035   -0.206 0.169  C24 Y2S 24 
Y2S C26 C20 C 0 1 N N N -30.528 11.387 16.520 5.601   0.193  -1.196 C26 Y2S 25 
Y2S C27 C21 C 0 1 N N N -29.619 12.073 15.510 7.110   0.413  -1.078 C27 Y2S 26 
Y2S C28 C22 C 0 1 N N N -30.078 13.525 15.449 7.386   1.526  -0.065 C28 Y2S 27 
Y2S C30 C23 C 0 1 N N N -29.745 14.130 16.814 6.820   1.127  1.299  C30 Y2S 28 
Y2S C31 C24 C 0 1 N N N -30.635 13.455 17.866 5.311   0.907  1.181  C31 Y2S 29 
Y2S C32 C25 C 0 1 N N N -29.380 14.257 14.310 8.896   1.746  0.053  C32 Y2S 30 
Y2S O36 O3  O 0 1 N N N -34.961 11.850 20.208 1.772   -4.099 0.940  O36 Y2S 31 
Y2S C37 C26 C 0 1 N N N -36.169 12.220 20.887 1.111   -5.332 1.230  C37 Y2S 32 
Y2S F33 F1  F 0 1 N N N -28.052 14.525 14.628 9.413   2.112  -1.194 F33 Y2S 33 
Y2S F34 F2  F 0 1 N N N -30.082 15.433 14.040 9.148   2.764  0.979  F34 Y2S 34 
Y2S F35 F3  F 0 1 N N N -29.384 13.477 13.156 9.507   0.563  0.483  F35 Y2S 35 
Y2S H1  H1  H 0 1 N N N -31.850 0.338  24.033 -8.858  -0.688 1.111  H1  Y2S 36 
Y2S H2  H2  H 0 1 N N N -31.725 -0.048 22.283 -7.511  0.085  1.981  H2  Y2S 37 
Y2S H3  H3  H 0 1 N N N -33.186 1.181  21.232 -8.815  -0.904 -1.309 H3  Y2S 38 
Y2S H4  H4  H 0 1 N N N -30.832 3.121  24.214 -5.583  0.938  0.777  H4  Y2S 39 
Y2S H5  H5  H 0 1 N N N -33.535 5.385  21.792 -5.091  -0.259 -3.286 H5  Y2S 40 
Y2S H6  H6  H 0 1 N N N -34.202 3.327  20.613 -7.411  -1.084 -3.324 H6  Y2S 41 
Y2S H7  H7  H 0 1 N N N -31.922 5.531  24.843 -3.497  1.235  -2.230 H7  Y2S 42 
Y2S H8  H8  H 0 1 N N N -30.692 5.857  23.575 -3.702  1.735  -0.535 H8  Y2S 43 
Y2S H9  H9  H 0 1 N N N -28.333 0.283  24.497 -9.839  1.147  2.824  H9  Y2S 44 
Y2S H10 H10 H 0 1 N N N -29.420 0.541  26.535 -9.719  3.861  2.049  H10 Y2S 45 
Y2S H11 H11 H 0 1 N N N -30.587 1.585  25.655 -11.066 3.088  1.179  H11 Y2S 46 
Y2S H12 H12 H 0 1 N N N -30.854 -0.189 25.736 -11.057 3.119  2.959  H12 Y2S 47 
Y2S H13 H13 H 0 1 N N N -33.377 7.080  23.770 -3.235  -1.050 -0.591 H13 Y2S 48 
Y2S H14 H14 H 0 1 N N N -35.828 10.066 21.942 -0.831  -4.175 0.645  H14 Y2S 49 
Y2S H15 H15 H 0 1 N N N -31.268 9.213  20.390 1.124   0.186  -0.433 H15 Y2S 50 
Y2S H16 H16 H 0 1 N N N -32.824 12.252 18.781 3.666   -2.415 0.665  H16 Y2S 51 
Y2S H17 H17 H 0 1 N N N -30.537 10.349 19.406 2.908   0.386  -0.269 H17 Y2S 52 
Y2S H18 H18 H 0 1 N N N -29.181 11.894 18.129 5.511   -1.128 0.503  H18 Y2S 53 
Y2S H19 H19 H 0 1 N N N -31.580 11.555 16.245 5.404   -0.600 -1.917 H19 Y2S 54 
Y2S H20 H20 H 0 1 N N N -30.320 10.307 16.532 5.124   1.115  -1.530 H20 Y2S 55 
Y2S H21 H21 H 0 1 N N N -29.719 11.599 14.522 7.587   -0.508 -0.743 H21 Y2S 56 
Y2S H22 H22 H 0 1 N N N -28.571 12.017 15.839 7.513   0.698  -2.049 H22 Y2S 57 
Y2S H23 H23 H 0 1 N N N -31.166 13.558 15.292 6.910   2.448  -0.400 H23 Y2S 58 
Y2S H24 H24 H 0 1 N N N -28.686 13.952 17.052 7.297   0.205  1.634  H24 Y2S 59 
Y2S H25 H25 H 0 1 N N N -29.941 15.212 16.800 7.017   1.920  2.020  H25 Y2S 60 
Y2S H26 H26 H 0 1 N N N -30.467 13.915 18.851 4.835   1.829  0.846  H26 Y2S 61 
Y2S H27 H27 H 0 1 N N N -31.694 13.562 17.587 4.908   0.622  2.153  H27 Y2S 62 
Y2S H28 H28 H 0 1 N N N -36.610 13.101 20.398 0.388   -5.177 2.031  H28 Y2S 63 
Y2S H29 H29 H 0 1 N N N -36.882 11.384 20.848 0.594   -5.686 0.338  H29 Y2S 64 
Y2S H30 H30 H 0 1 N N N -35.941 12.459 21.936 1.846   -6.074 1.543  H30 Y2S 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2S F35 C32 SING N N 1  
Y2S F34 C32 SING N N 2  
Y2S C32 F33 SING N N 3  
Y2S C32 C28 SING N N 4  
Y2S C28 C27 SING N N 5  
Y2S C28 C30 SING N N 6  
Y2S C27 C26 SING N N 7  
Y2S C26 C24 SING N N 8  
Y2S C30 C31 SING N N 9  
Y2S C31 C24 SING N N 10 
Y2S C24 C23 SING N N 11 
Y2S C23 C22 DOUB N E 12 
Y2S C22 C20 SING N N 13 
Y2S O36 C19 SING N N 14 
Y2S O36 C37 SING N N 15 
Y2S C20 C19 DOUB Y N 16 
Y2S C20 C21 SING Y N 17 
Y2S C19 C18 SING Y N 18 
Y2S C21 C16 DOUB Y N 19 
Y2S C10 C11 DOUB Y N 20 
Y2S C10 C9  SING Y N 21 
Y2S O15 C14 DOUB N N 22 
Y2S C18 N17 DOUB Y N 23 
Y2S C16 N17 SING Y N 24 
Y2S C16 C14 SING N N 25 
Y2S C11 C6  SING Y N 26 
Y2S C9  C8  DOUB Y N 27 
Y2S C14 N13 SING N N 28 
Y2S O4  C3  DOUB N N 29 
Y2S C6  C5  SING N N 30 
Y2S C6  C7  DOUB Y N 31 
Y2S C8  C7  SING Y N 32 
Y2S C8  C12 SING N N 33 
Y2S C5  C3  SING N N 34 
Y2S C3  N2  SING N N 35 
Y2S N13 C12 SING N N 36 
Y2S N2  C1  SING N N 37 
Y2S C5  H1  SING N N 38 
Y2S C5  H2  SING N N 39 
Y2S C11 H3  SING N N 40 
Y2S C7  H4  SING N N 41 
Y2S C9  H5  SING N N 42 
Y2S C10 H6  SING N N 43 
Y2S C12 H7  SING N N 44 
Y2S C12 H8  SING N N 45 
Y2S N2  H9  SING N N 46 
Y2S C1  H10 SING N N 47 
Y2S C1  H11 SING N N 48 
Y2S C1  H12 SING N N 49 
Y2S N13 H13 SING N N 50 
Y2S C18 H14 SING N N 51 
Y2S C21 H15 SING N N 52 
Y2S C22 H16 SING N N 53 
Y2S C23 H17 SING N N 54 
Y2S C24 H18 SING N N 55 
Y2S C26 H19 SING N N 56 
Y2S C26 H20 SING N N 57 
Y2S C27 H21 SING N N 58 
Y2S C27 H22 SING N N 59 
Y2S C28 H23 SING N N 60 
Y2S C30 H24 SING N N 61 
Y2S C30 H25 SING N N 62 
Y2S C31 H26 SING N N 63 
Y2S C31 H27 SING N N 64 
Y2S C37 H28 SING N N 65 
Y2S C37 H29 SING N N 66 
Y2S C37 H30 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2S SMILES           ACDLabs              12.01 "C(NCc1cc(CC(NC)=O)ccc1)(=O)c2ncc(c(c2)[C@H]=[C@H]C3CCC(CC3)C(F)(F)F)OC"                                                                                                                                           
Y2S InChI            InChI                1.03  "InChI=1S/C26H30F3N3O3/c1-30-24(33)13-18-4-3-5-19(12-18)15-32-25(34)22-14-20(23(35-2)16-31-22)9-6-17-7-10-21(11-8-17)26(27,28)29/h3-6,9,12,14,16-17,21H,7-8,10-11,13,15H2,1-2H3,(H,30,33)(H,32,34)/b9-6+/t17-,21-" 
Y2S InChIKey         InChI                1.03  YBEYBRFOUHYJAL-ZDXIVYMOSA-N                                                                                                                                                                                        
Y2S SMILES_CANONICAL CACTVS               3.385 "CNC(=O)Cc1cccc(CNC(=O)c2cc(/C=C/[C@H]3CC[C@@H](CC3)C(F)(F)F)c(OC)cn2)c1"                                                                                                                                          
Y2S SMILES           CACTVS               3.385 "CNC(=O)Cc1cccc(CNC(=O)c2cc(C=C[CH]3CC[CH](CC3)C(F)(F)F)c(OC)cn2)c1"                                                                                                                                               
Y2S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)Cc1cccc(c1)CNC(=O)c2cc(c(cn2)OC)/C=C/C3CCC(CC3)C(F)(F)F"                                                                                                                                                   
Y2S SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)Cc1cccc(c1)CNC(=O)c2cc(c(cn2)OC)C=CC3CCC(CC3)C(F)(F)F"                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2S "SYSTEMATIC NAME" ACDLabs              12.01 "5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide"            
Y2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-methoxy-~{N}-[[3-[2-(methylamino)-2-oxidanylidene-ethyl]phenyl]methyl]-4-[(~{E})-2-[4-(trifluoromethyl)cyclohexyl]ethenyl]pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2S "Create component" 2021-02-01 RCSB 
Y2S "Initial release"  2023-08-16 RCSB 
# 
