data_L4S
#

_chem_comp.id                                   L4S
_chem_comp.name                                 "2',5'-dideoxy-5'-[4-({[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetyl}amino)-1H-1,2,3-triazol-1-yl]cytidine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H29 N7 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-06
_chem_comp.pdbx_modified_date                   2020-02-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.541
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L4S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NVD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L4S  C10  C1   C  0  1  N  N  N  -22.924  17.370  -2.411   -2.099  -0.219  -0.398  C10  L4S   1  
L4S  C13  C2   C  0  1  N  N  N  -25.571  16.805  -4.821   -4.055  -2.500  -0.639  C13  L4S   2  
L4S  C15  C3   C  0  1  N  N  N  -27.169  16.404  -2.874   -6.484  -2.320  -0.221  C15  L4S   3  
L4S  C17  C4   C  0  1  N  N  N  -26.261  14.227  -3.155   -6.539   0.100   0.462  C17  L4S   4  
L4S  C21  C5   C  0  1  Y  N  N  -27.452  10.769  -2.130   -9.585   2.300   0.537  C21  L4S   5  
L4S  C22  C6   C  0  1  Y  N  N  -27.983  10.993  -0.877  -10.155   2.000  -0.683  C22  L4S   6  
L4S  C24  C7   C  0  1  Y  N  N  -27.438  13.371  -1.008   -8.384   0.458  -1.166  C24  L4S   7  
L4S  C02  C8   C  0  1  N  N  S  -16.293  19.206  -3.620    5.064  -2.505   0.973  C02  L4S   8  
L4S  C03  C9   C  0  1  N  N  R  -16.389  18.824  -2.128    4.108  -1.577   0.199  C03  L4S   9  
L4S  C04  C10  C  0  1  N  N  N  -17.284  17.512  -1.885    3.004  -1.074   1.131  C04  L4S  10  
L4S  C08  C11  C  0  1  Y  N  N  -20.761  18.395  -1.559    0.188   0.442  -0.518  C08  L4S  11  
L4S  C11  C12  C  0  1  N  N  N  -24.384  17.649  -2.987   -3.543  -0.032  -0.786  C11  L4S  12  
L4S  C12  C13  C  0  1  N  N  S  -24.919  16.416  -3.736   -4.399  -1.097  -0.097  C12  L4S  13  
L4S  C14  C14  C  0  1  N  N  N  -27.052  17.103  -4.279   -5.381  -3.277  -0.718  C14  L4S  14  
L4S  C16  C15  C  0  1  N  N  R  -26.039  15.694  -2.715   -5.894  -0.907  -0.455  C16  L4S  15  
L4S  C18  C16  C  0  1  Y  N  N  -26.923  13.139  -2.237   -7.788   0.760   0.065  C18  L4S  16  
L4S  C19  C17  C  0  1  Y  N  N  -26.922  11.852  -2.804   -8.402   1.687   0.923  C19  L4S  17  
L4S  C23  C18  C  0  1  Y  N  N  -27.975  12.289  -0.327   -9.556   1.081  -1.532  C23  L4S  18  
L4S  C27  C19  C  0  1  Y  N  N  -19.706  17.864  -2.259    0.692  -0.513   0.307  C27  L4S  19  
L4S  C29  C20  C  0  1  N  N  R  -14.226  19.228  -2.935    6.244  -0.934  -0.421  C29  L4S  20  
L4S  C31  C21  C  0  1  N  N  N  -12.944  17.199  -2.175    8.078   0.341  -1.421  C31  L4S  21  
L4S  C32  C22  C  0  1  N  N  N  -11.681  16.461  -2.026    8.937   1.387  -1.398  C32  L4S  22  
L4S  C33  C23  C  0  1  N  N  N  -10.392  17.050  -2.508    8.882   2.293  -0.318  C33  L4S  23  
L4S  C36  C24  C  0  1  N  N  N  -11.615  19.083  -3.285    7.148   1.078   0.607  C36  L4S  24  
L4S  C38  C25  C  0  1  N  N  N  -14.840  18.966  -4.021    6.449  -1.829   0.828  C38  L4S  25  
L4S  N05  N1   N  0  1  Y  N  N  -18.641  17.968  -1.502    2.034  -0.291   0.361  N05  L4S  26  
L4S  N06  N2   N  0  1  Y  N  N  -18.968  18.565  -0.345    2.304   0.725  -0.380  N06  L4S  27  
L4S  N07  N3   N  0  1  Y  N  N  -20.304  18.834  -0.392    1.230   1.185  -0.918  N07  L4S  28  
L4S  N09  N4   N  0  1  N  N  N  -22.111  18.485  -2.062   -1.158   0.613  -0.884  N09  L4S  29  
L4S  N30  N5   N  0  1  N  N  N  -12.913  18.504  -2.808    7.180   0.193  -0.407  N30  L4S  30  
L4S  N34  N6   N  0  1  N  N  N   -9.205  16.302  -2.351    9.743   3.364  -0.269  N34  L4S  31  
L4S  N35  N7   N  0  1  N  N  N  -10.353  18.344  -3.138    7.994   2.105   0.650  N35  L4S  32  
L4S  O01  O1   O  0  1  N  N  N  -16.596  20.554  -3.673    5.078  -3.809   0.389  O01  L4S  33  
L4S  O20  O2   O  0  1  N  N  N  -26.344  11.757  -4.102   -7.841   1.982   2.121  O20  L4S  34  
L4S  O25  O3   O  0  1  N  N  N  -25.894  13.844  -4.196   -6.026   0.365   1.529  O25  L4S  35  
L4S  O26  O4   O  0  1  N  N  N  -22.552  16.256  -2.275   -1.785  -1.117   0.356  O26  L4S  36  
L4S  O28  O5   O  0  1  N  N  N  -15.201  18.597  -1.795    4.885  -0.468  -0.282  O28  L4S  37  
L4S  O37  O6   O  0  1  N  N  N  -11.561  20.128  -3.791    6.340   0.927   1.509  O37  L4S  38  
L4S  H1   H1   H  0  1  N  N  N  -25.582  16.009  -5.580   -3.611  -2.418  -1.630  H1   L4S  39  
L4S  H2   H2   H  0  1  N  N  N  -25.118  17.712  -5.248   -3.367  -3.004   0.040  H2   L4S  40  
L4S  H3   H3   H  0  1  N  N  N  -27.261  17.159  -2.079   -7.396  -2.454  -0.803  H3   L4S  41  
L4S  H4   H4   H  0  1  N  N  N  -28.044  15.738  -2.851   -6.682  -2.480   0.839  H4   L4S  42  
L4S  H5   H5   H  0  1  N  N  N  -27.451   9.782  -2.569  -10.059   3.017   1.192  H5   L4S  43  
L4S  H6   H6   H  0  1  N  N  N  -28.406  10.172  -0.316  -11.074   2.484  -0.980  H6   L4S  44  
L4S  H7   H7   H  0  1  N  N  N  -27.431  14.360  -0.574   -7.922  -0.257  -1.830  H7   L4S  45  
L4S  H8   H8   H  0  1  N  N  N  -16.973  18.586  -4.223    4.775  -2.561   2.023  H8   L4S  46  
L4S  H9   H9   H  0  1  N  N  N  -16.847  19.658  -1.576    3.668  -2.116  -0.640  H9   L4S  47  
L4S  H10  H10  H  0  1  N  N  N  -17.334  16.915  -2.807    2.501  -1.925   1.591  H10  L4S  48  
L4S  H11  H11  H  0  1  N  N  N  -16.849  16.904  -1.078    3.441  -0.448   1.908  H11  L4S  49  
L4S  H12  H12  H  0  1  N  N  N  -24.342  18.502  -3.680   -3.877   0.959  -0.476  H12  L4S  50  
L4S  H13  H13  H  0  1  N  N  N  -25.061  17.887  -2.154   -3.645  -0.128  -1.867  H13  L4S  51  
L4S  H14  H14  H  0  1  N  N  N  -24.107  15.701  -3.933   -4.256  -1.060   0.984  H14  L4S  52  
L4S  H15  H15  H  0  1  N  N  N  -27.207  18.187  -4.177   -5.579  -3.573  -1.748  H15  L4S  53  
L4S  H16  H16  H  0  1  N  N  N  -27.800  16.689  -4.972   -5.335  -4.159  -0.078  H16  L4S  54  
L4S  H17  H17  H  0  1  N  N  N  -25.646  15.725  -1.688   -6.009  -0.608  -1.497  H17  L4S  55  
L4S  H18  H18  H  0  1  N  N  N  -28.399  12.445   0.654  -10.011   0.853  -2.484  H18  L4S  56  
L4S  H19  H19  H  0  1  N  N  N  -19.746  17.439  -3.251    0.140  -1.290   0.816  H19  L4S  57  
L4S  H20  H20  H  0  1  N  N  N  -14.094  20.302  -2.736    6.359  -1.515  -1.336  H20  L4S  58  
L4S  H21  H21  H  0  1  N  N  N  -13.874  16.779  -1.821    8.101  -0.366  -2.237  H21  L4S  59  
L4S  H22  H22  H  0  1  N  N  N  -11.683  15.485  -1.564    9.655   1.526  -2.193  H22  L4S  60  
L4S  H23  H23  H  0  1  N  N  N  -14.677  17.924  -4.333    6.681  -1.225   1.705  H23  L4S  61  
L4S  H24  H24  H  0  1  N  N  N  -14.530  19.643  -4.830    7.228  -2.570   0.651  H24  L4S  62  
L4S  H25  H25  H  0  1  N  N  N  -22.504  19.398  -2.173   -1.409   1.331  -1.487  H25  L4S  63  
L4S  H26  H26  H  0  1  N  N  N   -8.335  16.671  -2.678   10.391   3.499  -0.978  H26  L4S  64  
L4S  H27  H27  H  0  1  N  N  N   -9.234  15.403  -1.913    9.702   3.986   0.475  H27  L4S  65  
L4S  H28  H28  H  0  1  N  N  N  -17.502  20.685  -3.421    5.664  -4.435   0.837  H28  L4S  66  
L4S  H29  H29  H  0  1  N  N  N  -26.048  12.616  -4.381   -7.217   2.720   2.093  H29  L4S  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L4S  C13  C14  SING  N  N   1  
L4S  C13  C12  SING  N  N   2  
L4S  C14  C15  SING  N  N   3  
L4S  O25  C17  DOUB  N  N   4  
L4S  O20  C19  SING  N  N   5  
L4S  C38  C02  SING  N  N   6  
L4S  C38  C29  SING  N  N   7  
L4S  O37  C36  DOUB  N  N   8  
L4S  C12  C11  SING  N  N   9  
L4S  C12  C16  SING  N  N  10  
L4S  O01  C02  SING  N  N  11  
L4S  C02  C03  SING  N  N  12  
L4S  C36  N35  SING  N  N  13  
L4S  C36  N30  SING  N  N  14  
L4S  C17  C16  SING  N  N  15  
L4S  C17  C18  SING  N  N  16  
L4S  N35  C33  DOUB  N  N  17  
L4S  C11  C10  SING  N  N  18  
L4S  C29  N30  SING  N  N  19  
L4S  C29  O28  SING  N  N  20  
L4S  C15  C16  SING  N  N  21  
L4S  N30  C31  SING  N  N  22  
L4S  C19  C18  DOUB  Y  N  23  
L4S  C19  C21  SING  Y  N  24  
L4S  C33  N34  SING  N  N  25  
L4S  C33  C32  SING  N  N  26  
L4S  C10  O26  DOUB  N  N  27  
L4S  C10  N09  SING  N  N  28  
L4S  C27  C08  DOUB  Y  N  29  
L4S  C27  N05  SING  Y  N  30  
L4S  C18  C24  SING  Y  N  31  
L4S  C31  C32  DOUB  N  N  32  
L4S  C21  C22  DOUB  Y  N  33  
L4S  C03  C04  SING  N  N  34  
L4S  C03  O28  SING  N  N  35  
L4S  N09  C08  SING  N  N  36  
L4S  C04  N05  SING  N  N  37  
L4S  C08  N07  SING  Y  N  38  
L4S  N05  N06  SING  Y  N  39  
L4S  C24  C23  DOUB  Y  N  40  
L4S  C22  C23  SING  Y  N  41  
L4S  N07  N06  DOUB  Y  N  42  
L4S  C13  H1   SING  N  N  43  
L4S  C13  H2   SING  N  N  44  
L4S  C15  H3   SING  N  N  45  
L4S  C15  H4   SING  N  N  46  
L4S  C21  H5   SING  N  N  47  
L4S  C22  H6   SING  N  N  48  
L4S  C24  H7   SING  N  N  49  
L4S  C02  H8   SING  N  N  50  
L4S  C03  H9   SING  N  N  51  
L4S  C04  H10  SING  N  N  52  
L4S  C04  H11  SING  N  N  53  
L4S  C11  H12  SING  N  N  54  
L4S  C11  H13  SING  N  N  55  
L4S  C12  H14  SING  N  N  56  
L4S  C14  H15  SING  N  N  57  
L4S  C14  H16  SING  N  N  58  
L4S  C16  H17  SING  N  N  59  
L4S  C23  H18  SING  N  N  60  
L4S  C27  H19  SING  N  N  61  
L4S  C29  H20  SING  N  N  62  
L4S  C31  H21  SING  N  N  63  
L4S  C32  H22  SING  N  N  64  
L4S  C38  H23  SING  N  N  65  
L4S  C38  H24  SING  N  N  66  
L4S  N09  H25  SING  N  N  67  
L4S  N34  H26  SING  N  N  68  
L4S  N34  H27  SING  N  N  69  
L4S  O01  H28  SING  N  N  70  
L4S  O20  H29  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L4S  SMILES            ACDLabs               12.01  "C(=O)(Nc3nnn(CC2C(CC(N1C=CC(N)=NC1=O)O2)O)c3)CC5CCCC5C(c4ccccc4O)=O"  
L4S  InChI             InChI                 1.03   "InChI=1S/C25H29N7O6/c26-20-8-9-32(25(37)27-20)23-11-18(34)19(38-23)12-31-13-21(29-30-31)28-22(35)10-14-4-3-6-15(14)24(36)16-5-1-2-7-17(16)33/h1-2,5,7-9,13-15,18-19,23,33-34H,3-4,6,10-12H2,(H,28,35)(H2,26,27,37)/t14-,15+,18-,19+,23+/m0/s1"  
L4S  InChIKey          InChI                 1.03   QYQWONZWXIVWAC-CBSYKJJGSA-N  
L4S  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](Cn3cc(NC(=O)C[C@@H]4CCC[C@H]4C(=O)c5ccccc5O)nn3)O2"  
L4S  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](Cn3cc(NC(=O)C[CH]4CCC[CH]4C(=O)c5ccccc5O)nn3)O2"  
L4S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)C(=O)[C@@H]2CCC[C@H]2CC(=O)Nc3cn(nn3)C[C@@H]4[C@H](C[C@@H](O4)N5C=CC(=NC5=O)N)O)O"  
L4S  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)C(=O)C2CCCC2CC(=O)Nc3cn(nn3)CC4C(CC(O4)N5C=CC(=NC5=O)N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L4S  "SYSTEMATIC NAME"  ACDLabs               12.01  "2',5'-dideoxy-5'-[4-({[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetyl}amino)-1H-1,2,3-triazol-1-yl]cytidine"  
L4S  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[1-[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl]-1,2,3-triazol-4-yl]-2-[(1~{S},2~{R})-2-(2-hydroxyphenyl)carbonylcyclopentyl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L4S  "Create component"  2019-02-06  RCSB  
L4S  "Initial release"   2020-02-12  RCSB  
##
