data_C8S
# 
_chem_comp.id                                    C8S 
_chem_comp.name                                  "(2S)-2-amino-1-[(1S,3S,5S)-3-(aminomethyl)-2-azabicyclo[3.1.0]hexan-2-yl]-2-[(1r,3R,5S,7S)-3,5-dihydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H29 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        335.441 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B1O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8S C2  C1  C 0 1 N N N N N N 5.363  2.152  33.005 -2.066 0.783  -1.299 C2  C8S 1  
C8S C3  C2  C 0 1 N N R N N N 6.810  2.608  33.316 -3.269 0.859  -0.358 C3  C8S 2  
C8S C4  C3  C 0 1 N N N N N N 5.176  0.690  33.486 -0.906 0.082  -0.589 C4  C8S 3  
C8S C5  C4  C 0 1 N N N N N N 7.811  1.710  32.557 -2.887 1.648  0.896  C5  C8S 4  
C8S C6  C5  C 0 1 N N N N N N 6.245  -0.202 32.774 -0.524 0.871  0.665  C6  C8S 5  
C8S C7  C6  C 0 1 N N N N N N 7.682  0.279  33.062 -1.727 0.947  1.606  C7  C8S 6  
C8S C8  C7  C 0 1 N N N N N N 5.516  0.648  35.010 -1.332 -1.333 -0.191 C8  C8S 7  
C8S N1  N1  N 0 1 N N N N N N 3.356  -0.036 31.832 -0.023 -0.871 -2.665 N1  C8S 8  
C8S C9  C8  C 0 1 N N S N N N 6.934  1.186  35.333 -2.536 -1.257 0.750  C9  C8S 9  
C8S C10 C9  C 0 1 N N N N N N 7.065  2.649  34.859 -3.695 -0.555 0.040  C10 C8S 10 
C8S C11 C10 C 0 1 N N N N N N 7.920  0.269  34.586 -2.154 -0.468 2.004  C11 C8S 11 
C8S C12 C11 C 0 1 N N S N N N 3.724  0.096  33.273 0.298  0.006  -1.531 C12 C8S 12 
C8S O13 O1  O 0 1 N N N N N N 7.031  3.889  32.769 -4.352 1.514  -1.021 O13 C8S 13 
C8S C14 C12 C 0 1 N N N N N N 2.659  0.956  33.964 1.484  -0.550 -0.786 C14 C8S 14 
C8S C15 C13 C 0 1 N N S N N N 1.068  1.243  35.811 3.793  -0.140 0.172  C15 C8S 15 
C8S N16 N2  N 0 1 N N N N N N 2.190  0.578  35.192 2.512  0.257  -0.457 N16 C8S 16 
C8S C17 C14 C 0 1 N N N N N N 0.345  0.275  36.696 4.071  1.013  1.169  C17 C8S 17 
C8S C18 C15 C 0 1 N N S N N N 2.546  -0.614 35.944 2.592  1.718  -0.650 C18 C8S 18 
C8S C19 C16 C 0 1 N N S N N N 1.418  -0.740 36.990 3.581  2.260  0.399  C19 C8S 19 
C8S C20 C17 C 0 1 N N N N N N 2.852  -0.556 37.424 2.098  2.623  0.481  C20 C8S 20 
C8S O21 O2  O 0 1 N N N N N N 2.250  1.970  33.421 1.514  -1.724 -0.482 O21 C8S 21 
C8S O22 O3  O 0 1 N N N N N N 7.186  1.102  36.759 -2.934 -2.578 1.122  O22 C8S 22 
C8S C23 C18 C 0 1 N N N N N N 1.395  2.493  36.757 3.640  -1.470 0.914  C23 C8S 23 
C8S N24 N3  N 0 1 N N N N N N 2.611  3.066  36.565 3.543  -2.565 -0.060 N24 C8S 24 
C8S H1  H1  H 0 1 N N N N N N 4.650  2.806  33.529 -2.338 0.221  -2.193 H1  C8S 25 
C8S H2  H2  H 0 1 N N N N N N 5.184  2.209  31.921 -1.762 1.791  -1.583 H2  C8S 26 
C8S H3  H3  H 0 1 N N N N N N 8.835  2.071  32.732 -2.583 2.656  0.613  H3  C8S 27 
C8S H4  H4  H 0 1 N N N N N N 7.590  1.741  31.480 -3.744 1.702  1.567  H4  C8S 28 
C8S H5  H5  H 0 1 N N N N N N 6.070  -0.168 31.689 0.303  0.371  1.171  H5  C8S 29 
C8S H6  H6  H 0 1 N N N N N N 6.139  -1.237 33.131 -0.220 1.879  0.381  H6  C8S 30 
C8S H7  H7  H 0 1 N N N N N N 8.410  -0.374 32.559 -1.455 1.509  2.499  H7  C8S 31 
C8S H8  H8  H 0 1 N N N N N N 4.778  1.260  35.550 -1.604 -1.895 -1.084 H8  C8S 32 
C8S H9  H9  H 0 1 N N N N N N 5.450  -0.395 35.355 -0.506 -1.832 0.315  H9  C8S 33 
C8S H10 H10 H 0 1 N N N N N N 2.433  -0.414 31.756 -0.246 -1.803 -2.350 H10 C8S 34 
C8S H11 H11 H 0 1 N N N N N N 3.384  0.864  31.397 -0.774 -0.486 -3.218 H11 C8S 35 
C8S H13 H13 H 0 1 N N N N N N 8.073  3.034  35.073 -4.553 -0.502 0.711  H13 C8S 36 
C8S H14 H14 H 0 1 N N N N N N 6.317  3.284  35.356 -3.968 -1.118 -0.853 H14 C8S 37 
C8S H15 H15 H 0 1 N N N N N N 7.798  -0.759 34.957 -1.327 -0.967 2.510  H15 C8S 38 
C8S H16 H16 H 0 1 N N N N N N 8.945  0.613  34.787 -3.011 -0.414 2.675  H16 C8S 39 
C8S H17 H17 H 0 1 N N N N N N 3.706  -0.903 33.732 0.535  1.004  -1.898 H17 C8S 40 
C8S H18 H18 H 0 1 N N N N N N 6.449  4.515  33.183 -5.151 1.598  -0.482 H18 C8S 41 
C8S H19 H19 H 0 1 N N N N N N 0.375  1.592  35.031 4.586  -0.205 -0.572 H19 C8S 42 
C8S H20 H20 H 0 1 N N N N N N -0.008 0.762  37.617 3.499  0.876  2.087  H20 C8S 43 
C8S H21 H21 H 0 1 N N N N N N -0.508 -0.184 36.174 5.137  1.087  1.385  H21 C8S 44 
C8S H22 H22 H 0 1 N N N N N N 2.829  -1.526 35.397 2.596  2.088  -1.675 H22 C8S 45 
C8S H23 H23 H 0 1 N N N N N N 1.043  -1.767 37.108 4.319  3.023  0.151  H23 C8S 46 
C8S H24 H24 H 0 1 N N N N N N 3.388  -1.388 37.904 1.815  3.643  0.221  H24 C8S 47 
C8S H25 H25 H 0 1 N N N N N N 3.167  0.394  37.880 1.510  2.161  1.275  H25 C8S 48 
C8S H26 H26 H 0 1 N N N N N N 6.579  1.667  37.222 -3.694 -2.606 1.720  H26 C8S 49 
C8S H27 H27 H 0 1 N N N N N N 0.627  3.261  36.583 4.507  -1.630 1.555  H27 C8S 50 
C8S H28 H28 H 0 1 N N N N N N 1.342  2.151  37.801 2.737  -1.445 1.523  H28 C8S 51 
C8S H29 H29 H 0 1 N N N N N N 2.722  3.833  37.197 4.405  -2.671 -0.573 H29 C8S 52 
C8S H30 H30 H 0 1 N N N N N N 3.328  2.389  36.732 3.283  -3.429 0.392  H30 C8S 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8S N1  C12 SING N N 1  
C8S C5  C7  SING N N 2  
C8S C5  C3  SING N N 3  
C8S O13 C3  SING N N 4  
C8S C6  C7  SING N N 5  
C8S C6  C4  SING N N 6  
C8S C2  C3  SING N N 7  
C8S C2  C4  SING N N 8  
C8S C7  C11 SING N N 9  
C8S C12 C4  SING N N 10 
C8S C12 C14 SING N N 11 
C8S C3  C10 SING N N 12 
C8S O21 C14 DOUB N N 13 
C8S C4  C8  SING N N 14 
C8S C14 N16 SING N N 15 
C8S C11 C9  SING N N 16 
C8S C10 C9  SING N N 17 
C8S C8  C9  SING N N 18 
C8S N16 C15 SING N N 19 
C8S N16 C18 SING N N 20 
C8S C9  O22 SING N N 21 
C8S C15 C17 SING N N 22 
C8S C15 C23 SING N N 23 
C8S C18 C19 SING N N 24 
C8S C18 C20 SING N N 25 
C8S N24 C23 SING N N 26 
C8S C17 C19 SING N N 27 
C8S C19 C20 SING N N 28 
C8S C2  H1  SING N N 29 
C8S C2  H2  SING N N 30 
C8S C5  H3  SING N N 31 
C8S C5  H4  SING N N 32 
C8S C6  H5  SING N N 33 
C8S C6  H6  SING N N 34 
C8S C7  H7  SING N N 35 
C8S C8  H8  SING N N 36 
C8S C8  H9  SING N N 37 
C8S N1  H10 SING N N 38 
C8S N1  H11 SING N N 39 
C8S C10 H13 SING N N 40 
C8S C10 H14 SING N N 41 
C8S C11 H15 SING N N 42 
C8S C11 H16 SING N N 43 
C8S C12 H17 SING N N 44 
C8S O13 H18 SING N N 45 
C8S C15 H19 SING N N 46 
C8S C17 H20 SING N N 47 
C8S C17 H21 SING N N 48 
C8S C18 H22 SING N N 49 
C8S C19 H23 SING N N 50 
C8S C20 H24 SING N N 51 
C8S C20 H25 SING N N 52 
C8S O22 H26 SING N N 53 
C8S C23 H27 SING N N 54 
C8S C23 H28 SING N N 55 
C8S N24 H29 SING N N 56 
C8S N24 H30 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8S SMILES           ACDLabs              12.01 "C1C2(CC3(CC1(CC(C2)C3)C(N)C(N4C(CC5C4C5)CN)=O)O)O"                                                                                                                   
C8S InChI            InChI                1.03  "InChI=1S/C18H29N3O3/c19-6-12-1-11-2-13(11)21(12)15(22)14(20)16-3-10-4-17(23,7-16)9-18(24,5-10)8-16/h10-14,23-24H,1-9,19-20H2/t10-,11-,12+,13+,14-,16-,17+,18-/m1/s1" 
C8S InChIKey         InChI                1.03  NFCLGRKAEZJOPE-KAARGAEXSA-N                                                                                                                                           
C8S SMILES_CANONICAL CACTVS               3.385 "NC[C@@H]1C[C@@H]2C[C@@H]2N1C(=O)[C@@H](N)C34CC5C[C@](O)(C[C@](O)(C5)C3)C4"                                                                                           
C8S SMILES           CACTVS               3.385 "NC[CH]1C[CH]2C[CH]2N1C(=O)[CH](N)C34CC5C[C](O)(C[C](O)(C5)C3)C4"                                                                                                     
C8S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]2C[C@@H]2N([C@@H]1CN)C(=O)[C@H](C34CC5C[C@](C3)(C[C@@](C5)(C4)O)O)N"                                                                                         
C8S SMILES           "OpenEye OEToolkits" 2.0.6 "C1C2CC2N(C1CN)C(=O)C(C34CC5CC(C3)(CC(C5)(C4)O)O)N"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8S "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-1-[(1S,3S,5S)-3-(aminomethyl)-2-azabicyclo[3.1.0]hexan-2-yl]-2-[(1r,3R,5S,7S)-3,5-dihydroxytricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-one" 
C8S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-1-[(1~{S},3~{S},5~{S})-3-(aminomethyl)-2-azabicyclo[3.1.0]hexan-2-yl]-2-azanyl-2-[(3~{S},5~{R})-3,5-bis(oxidanyl)-1-adamantyl]ethanone"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8S "Create component" 2017-09-19 RCSB 
C8S "Initial release"  2017-09-27 RCSB 
C8S "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C8S 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
