data_C4S
# 
_chem_comp.id                                    C4S 
_chem_comp.name                                  
;2'-deoxy-4'-thiocytidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N3 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-11-28 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.263 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     C4S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2RMQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C4S O3P    O3P    O 0 1 N Y N 9.339 -2.279 -7.570 3.180  2.534  -0.670 O3P    C4S 1  
C4S P      P      P 0 1 N N N 7.787 -2.024 -7.225 3.654  1.151  0.005  P      C4S 2  
C4S O1P    O1P    O 0 1 N N N 7.736 -1.254 -5.956 4.823  0.493  -0.885 O1P    C4S 3  
C4S O2P    O2P    O 0 1 N N N 7.125 -1.482 -8.439 4.162  1.417  1.369  O2P    C4S 4  
C4S "O5'"  "O5'"  O 0 1 N N N 7.200 -3.480 -6.944 2.406  0.138  0.085  "O5'"  C4S 5  
C4S N1     N1     N 0 1 N N N 5.706 -6.368 -3.792 -2.632 -0.529 0.171  N1     C4S 6  
C4S C6     C6     C 0 1 N N N 6.204 -5.112 -3.627 -3.897 -0.854 0.559  C6     C4S 7  
C4S C2     C2     C 0 1 N N N 5.205 -7.071 -2.714 -2.372 0.683  -0.353 C2     C4S 8  
C4S O2     O2     O 0 1 N N N 4.774 -8.215 -2.900 -1.233 0.957  -0.696 O2     C4S 9  
C4S N3     N3     N 0 1 N N N 5.200 -6.492 -1.495 -3.336 1.589  -0.503 N3     C4S 10 
C4S C4     C4     C 0 1 N N N 5.681 -5.260 -1.343 -4.583 1.317  -0.140 C4     C4S 11 
C4S N4     N4     N 0 1 N N N 5.645 -4.715 -0.133 -5.571 2.261  -0.299 N4     C4S 12 
C4S C5     C5     C 0 1 N N N 6.217 -4.529 -2.427 -4.889 0.056  0.412  C5     C4S 13 
C4S "C2'"  "C2'"  C 0 1 N N N 4.450 -6.597 -5.920 -0.832 -1.747 -1.014 "C2'"  C4S 14 
C4S "C5'"  "C5'"  C 0 1 N N N 6.708 -4.289 -8.012 2.478  -1.137 0.728  "C5'"  C4S 15 
C4S "C4'"  "C4'"  C 0 1 N N R 6.144 -5.581 -7.466 1.123  -1.839 0.622  "C4'"  C4S 16 
C4S "S4'"  "S4'"  S 0 1 N N N 7.094 -6.384 -6.105 -0.204 -0.816 1.381  "S4'"  C4S 17 
C4S "C1'"  "C1'"  C 0 1 N N R 5.676 -6.991 -5.112 -1.548 -1.502 0.329  "C1'"  C4S 18 
C4S "C3'"  "C3'"  C 0 1 N N S 4.793 -5.396 -6.784 0.671  -1.937 -0.850 "C3'"  C4S 19 
C4S "O3'"  "O3'"  O 0 1 N N N 3.649 -5.170 -7.623 1.033  -3.222 -1.360 "O3'"  C4S 20 
C4S "H15'" "H15'" H 0 0 N N N 5.916 -3.744 -8.546 3.242  -1.745 0.243  "H15'" C4S 21 
C4S "H25'" "H25'" H 0 0 N N N 7.534 -4.519 -8.701 2.735  -1.000 1.778  "H25'" C4S 22 
C4S "H4'"  "H4'"  H 0 1 N N N 6.142 -6.184 -8.386 1.164  -2.827 1.080  "H4'"  C4S 23 
C4S "H1'"  "H1'"  H 0 1 N N N 5.690 -8.076 -4.932 -1.925 -2.437 0.744  "H1'"  C4S 24 
C4S H6     H6     H 0 1 N N N 6.595 -4.579 -4.481 -4.106 -1.826 0.979  H6     C4S 25 
C4S H1N4   H1N4   H 0 0 N N N 5.238 -5.357 0.517  -5.358 3.127  -0.679 H1N4   C4S 26 
C4S H2N4   H2N4   H 0 0 N N N 5.976 -3.799 0.095  -6.482 2.059  -0.032 H2N4   C4S 27 
C4S H5     H5     H 0 1 N N N 6.621 -3.537 -2.289 -5.899 -0.180 0.714  H5     C4S 28 
C4S "H12'" "H12'" H 0 0 N N N 4.140 -7.437 -6.558 -1.251 -2.640 -1.479 "H12'" C4S 29 
C4S "H22'" "H22'" H 0 0 N N N 3.626 -6.339 -5.239 -1.008 -0.894 -1.669 "H22'" C4S 30 
C4S "H3'"  "H3'"  H 0 1 N N N 4.960 -4.469 -6.216 1.188  -1.172 -1.429 "H3'"  C4S 31 
C4S HO3P   HO3P   H 0 0 N Y N 9.450 -2.329 -8.512 3.882  3.194  -0.751 HO3P   C4S 32 
C4S HO1P   HO1P   H 0 0 N N N 7.725 -1.855 -5.221 4.560  0.292  -1.793 HO1P   C4S 33 
C4S "HO3'" "HO3'" H 0 0 N Y N 2.867 -5.120 -7.086 0.783  -3.363 -2.283 "HO3'" C4S 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C4S O3P    P      SING N N 1  
C4S O3P    HO3P   SING N N 2  
C4S O2P    P      DOUB N N 3  
C4S P      "O5'"  SING N N 4  
C4S P      O1P    SING N N 5  
C4S O1P    HO1P   SING N N 6  
C4S "C5'"  "O5'"  SING N N 7  
C4S "C1'"  N1     SING N N 8  
C4S N1     C6     SING N N 9  
C4S N1     C2     SING N N 10 
C4S H6     C6     SING N N 11 
C4S C6     C5     DOUB N N 12 
C4S O2     C2     DOUB N N 13 
C4S C2     N3     SING N N 14 
C4S N3     C4     DOUB N N 15 
C4S C5     C4     SING N N 16 
C4S C4     N4     SING N N 17 
C4S N4     H1N4   SING N N 18 
C4S N4     H2N4   SING N N 19 
C4S C5     H5     SING N N 20 
C4S "C3'"  "C2'"  SING N N 21 
C4S "H22'" "C2'"  SING N N 22 
C4S "C2'"  "H12'" SING N N 23 
C4S "C2'"  "C1'"  SING N N 24 
C4S "H15'" "C5'"  SING N N 25 
C4S "H25'" "C5'"  SING N N 26 
C4S "C5'"  "C4'"  SING N N 27 
C4S "H4'"  "C4'"  SING N N 28 
C4S "C4'"  "C3'"  SING N N 29 
C4S "C4'"  "S4'"  SING N N 30 
C4S "S4'"  "C1'"  SING N N 31 
C4S "C1'"  "H1'"  SING N N 32 
C4S "O3'"  "C3'"  SING N N 33 
C4S "C3'"  "H3'"  SING N N 34 
C4S "O3'"  "HO3'" SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C4S SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2SC(C(O)C2)COP(=O)(O)O"                                                                                                       
C4S SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)S2"                                                                                      
C4S SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)S2"                                                                                          
C4S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](S[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O"                                                                                          
C4S SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(SC1N2C=CC(=NC2=O)N)COP(=O)(O)O)O"                                                                                                       
C4S InChI            InChI                1.03  "InChI=1S/C9H14N3O6PS/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(20-8)4-18-19(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" 
C4S InChIKey         InChI                1.03  XBGBVDAACAZVPJ-SHYZEUOFSA-N                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C4S "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-4'-thiocytidine 5'-(dihydrogen phosphate)
;
C4S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-thiolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C4S "Create component"  2007-11-28 PDBJ 
C4S "Modify descriptor" 2011-06-04 RCSB 
# 
