data_44S
# 
_chem_comp.id                                    44S 
_chem_comp.name                                  2-deoxy-6-O-phosphono-beta-D-lyxo-hexofuranose 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H13 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;tagatose-6-phosphate, bound form; 2-deoxy-6-O-phosphono-beta-D-lyxo-hexose; 2-deoxy-6-O-phosphono-D-lyxo-hexose;
2-deoxy-6-O-phosphono-lyxo-hexose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        244.136 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     44S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4S2B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 44S "tagatose-6-phosphate, bound form"       PDB ? 
2 44S 2-deoxy-6-O-phosphono-beta-D-lyxo-hexose PDB ? 
3 44S 2-deoxy-6-O-phosphono-D-lyxo-hexose      PDB ? 
4 44S 2-deoxy-6-O-phosphono-lyxo-hexose        PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
44S O1P O1P O 0 1 N N N N N N 29.055 -15.103 -24.366 -3.399 1.629  -0.357 O1P 44S 1  
44S P   P   P 0 1 N N N N N N 30.461 -15.399 -23.950 -3.337 0.090  0.112  P   44S 2  
44S O3P O3P O 0 1 N N N N N N 31.488 -15.368 -25.050 -3.551 0.010  1.574  O3P 44S 3  
44S O2P O2P O 0 1 N N N N N N 30.479 -16.672 -23.099 -4.484 -0.748 -0.646 O2P 44S 4  
44S O6  O6  O 0 1 N N N N N N 30.818 -14.300 -22.848 -1.894 -0.524 -0.254 O6  44S 5  
44S C6  C6  C 0 1 N N N N N N 30.855 -12.900 -23.129 -0.679 -0.064 0.343  C6  44S 6  
44S C5  C5  C 0 1 N N R N N N 30.561 -12.161 -21.831 0.500  -0.857 -0.225 C5  44S 7  
44S O5  O5  O 0 1 N N N N N N 31.709 -12.150 -21.023 0.634  -0.576 -1.620 O5  44S 8  
44S C4  C4  C 0 1 N N R N N N 30.121 -10.745 -22.104 1.784  -0.453 0.503  C4  44S 9  
44S C3  C3  C 0 1 N N R N N N 29.889 -9.784  -20.945 2.996  -1.154 -0.147 C3  44S 10 
44S O3  O3  O 0 1 N N N N N N 28.663 -9.998  -20.269 3.404  -2.285 0.625  O3  44S 11 
44S C2  C2  C 0 1 N N N N N N 29.798 -8.530  -21.765 4.079  -0.041 -0.111 C2  44S 12 
44S O4  O4  O 0 1 N N N N N N 31.058 -10.104 -22.950 1.986  0.960  0.384  O4  44S 13 
44S C1  C1  C 0 1 N N R N N N 30.932 -8.696  -22.760 3.208  1.223  -0.323 C1  44S 14 
44S O1  O1  O 0 1 N Y N N N N 30.650 -8.171  -24.041 3.859  2.372  0.223  O1  44S 15 
44S H1A H1  H 0 1 N N N N N N 29.030 -14.934 -25.301 -3.267 1.757  -1.306 H1A 44S 16 
44S H2A H2  H 0 1 N N N N N N 31.159 -17.255 -23.415 -5.381 -0.434 -0.472 H2A 44S 17 
44S H61 H3  H 0 1 N N N N N N 31.850 -12.619 -23.503 -0.544 0.995  0.124  H61 44S 18 
44S H62 H4  H 0 1 N N N N N N 30.095 -12.649 -23.884 -0.728 -0.209 1.423  H62 44S 19 
44S H5  H5  H 0 1 N N N N N N 29.744 -12.685 -21.313 0.322  -1.923 -0.084 H5  44S 20 
44S HO5 H6  H 0 1 N Y N N N N 31.523 -11.688 -20.214 0.794  0.356  -1.820 HO5 44S 21 
44S H4  H7  H 0 1 N N N N N N 29.168 -10.811 -22.649 1.716  -0.731 1.554  H4  44S 22 
44S H3  H8  H 0 1 N N N N N N 30.754 -9.762  -20.266 2.771  -1.447 -1.173 H3  44S 23 
44S HO3 H9  H 0 1 N Y N N N N 28.578 -9.371  -19.561 4.163  -2.759 0.258  HO3 44S 24 
44S H2  H10 H 0 1 N N N N N N 29.946 -7.637  -21.141 4.582  -0.013 0.856  H2  44S 25 
44S H11 H11 H 0 1 N N N N N N 28.827 -8.462  -22.278 4.797  -0.164 -0.921 H11 44S 26 
44S H1  H12 H 0 1 N N N N N N 31.857 -8.267  -22.346 3.007  1.370  -1.385 H1  44S 27 
44S HO1 H13 H 0 1 N Y N N N N 30.554 -7.228  -23.983 3.341  3.186  0.157  HO1 44S 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
44S O3P P   DOUB N N 1  
44S O1P P   SING N N 2  
44S O1  C1  SING N N 3  
44S P   O2P SING N N 4  
44S P   O6  SING N N 5  
44S C6  O6  SING N N 6  
44S C6  C5  SING N N 7  
44S O4  C1  SING N N 8  
44S O4  C4  SING N N 9  
44S C1  C2  SING N N 10 
44S C4  C5  SING N N 11 
44S C4  C3  SING N N 12 
44S C5  O5  SING N N 13 
44S C2  C3  SING N N 14 
44S C3  O3  SING N N 15 
44S O1P H1A SING N N 16 
44S O2P H2A SING N N 17 
44S C6  H61 SING N N 18 
44S C6  H62 SING N N 19 
44S C5  H5  SING N N 20 
44S O5  HO5 SING N N 21 
44S C4  H4  SING N N 22 
44S C3  H3  SING N N 23 
44S O3  HO3 SING N N 24 
44S C2  H2  SING N N 25 
44S C2  H11 SING N N 26 
44S C1  H1  SING N N 27 
44S O1  HO1 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
44S SMILES           ACDLabs              12.01 "O=P(O)(O)OCC(O)C1OC(O)CC1O"                                                                            
44S InChI            InChI                1.03  "InChI=1S/C6H13O8P/c7-3-1-5(9)14-6(3)4(8)2-13-15(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4-,5-,6-/m1/s1" 
44S InChIKey         InChI                1.03  YKPKUODDXPUHGL-KVTDHHQDSA-N                                                                             
44S SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O)[C@@H](O1)[C@H](O)CO[P](O)(O)=O"                                                      
44S SMILES           CACTVS               3.385 "O[CH]1C[CH](O)[CH](O1)[CH](O)CO[P](O)(O)=O"                                                            
44S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H](O[C@H]1O)[C@@H](COP(=O)(O)O)O)O"                                                        
44S SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1O)C(COP(=O)(O)O)O)O"                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
44S "SYSTEMATIC NAME" ACDLabs              12.01 2-deoxy-6-O-phosphono-beta-D-lyxo-hexofuranose                                             
44S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-[(2R,3R,5R)-3,5-bis(oxidanyl)oxolan-2-yl]-2-oxidanyl-ethyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
44S "CARBOHYDRATE ISOMER"                 D        PDB ? 
44S "CARBOHYDRATE RING"                   furanose PDB ? 
44S "CARBOHYDRATE ANOMER"                 beta     PDB ? 
44S "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
44S "Create component"         2015-02-11 RCSB 
44S "Initial release"          2016-01-20 RCSB 
44S "Other modification"       2020-07-03 RCSB 
44S "Modify name"              2020-07-17 RCSB 
44S "Modify synonyms"          2020-07-17 RCSB 
44S "Modify internal type"     2020-07-17 RCSB 
44S "Modify linking type"      2020-07-17 RCSB 
44S "Modify atom id"           2020-07-17 RCSB 
44S "Modify component atom id" 2020-07-17 RCSB 
44S "Modify leaving atom flag" 2020-07-17 RCSB 
44S "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            44S 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
