data_06S
# 
_chem_comp.id                                    06S 
_chem_comp.name                                  
;O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H26 N7 O16 P3 S3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-17 
_chem_comp.pdbx_modified_date                    2015-01-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        797.563 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     06S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4R09 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
06S O13 O13 O 0 1 N N N 17.101 -4.706 40.942 -8.126 -5.071 0.984  O13 06S 1  
06S C12 C12 C 0 1 N N N 16.599 -3.591 41.106 -7.835 -4.140 0.249  C12 06S 2  
06S C10 C10 C 0 1 Y N N 16.910 -2.870 42.202 -6.699 -3.267 0.560  C10 06S 3  
06S N4  N4  N 0 1 Y N N 17.675 -3.115 43.276 -5.786 -3.218 1.558  N4  06S 4  
06S C14 C14 C 0 1 Y N N 17.615 -2.001 44.055 -4.976 -2.221 1.348  C14 06S 5  
06S N3  N3  N 0 1 N N N 15.765 -3.089 40.194 -8.546 -3.897 -0.863 N3  06S 6  
06S C13 C13 C 0 1 N N N 15.230 -1.883 40.316 -8.245 -2.897 -1.663 C13 06S 7  
06S N5  N5  N 0 1 N N N 14.399 -1.440 39.364 -9.006 -2.697 -2.783 N5  06S 8  
06S N2  N2  N 0 1 N N N 15.499 -1.136 41.389 -7.206 -2.055 -1.421 N2  06S 9  
06S C11 C11 C 0 1 Y N N 16.349 -1.614 42.330 -6.416 -2.224 -0.313 C11 06S 10 
06S N1  N1  N 0 1 Y N N 16.804 -1.099 43.470 -5.332 -1.579 0.198  N1  06S 11 
06S C5  C5  C 0 1 N N R 16.426 0.207  43.988 -4.669 -0.408 -0.381 C5  06S 12 
06S C6  C6  C 0 1 N N R 16.712 1.298  42.976 -5.331 0.892  0.129  C6  06S 13 
06S O8  O8  O 0 1 N N N 18.078 1.736  43.071 -6.259 1.392  -0.836 O8  06S 14 
06S C7  C7  C 0 1 N N S 15.738 2.380  43.353 -4.149 1.872  0.302  C7  06S 15 
06S O9  O9  O 0 1 N N N 16.513 3.304  44.101 -4.311 3.008  -0.550 O9  06S 16 
06S P2  P2  P 0 1 N N N 16.051 4.784  44.545 -4.380 4.517  0.005  P2  06S 17 
06S S2  S2  S 0 1 N N N 14.269 4.732  45.638 -2.520 5.034  0.882  S2  06S 18 
06S O11 O11 O 0 1 N N N 15.795 5.598  43.292 -5.450 4.621  1.022  O11 06S 19 
06S O12 O12 O 0 1 N N N 17.177 5.200  45.465 -4.697 5.523  -1.212 O12 06S 20 
06S O6  O6  O 0 1 N N N 15.018 0.277  44.238 -3.301 -0.329 0.075  O6  06S 21 
06S C8  C8  C 0 1 N N R 14.652 1.665  44.183 -2.913 1.048  -0.123 C8  06S 22 
06S C9  C9  C 0 1 N N N 13.232 1.785  43.645 -1.712 1.396  0.759  C9  06S 23 
06S O7  O7  O 0 1 N N N 13.212 1.927  42.219 -0.553 0.712  0.277  O7  06S 24 
06S P1  P1  P 0 1 N N S 11.995 1.368  41.330 0.895  0.847  0.968  P1  06S 25 
06S O10 O10 O 0 1 N N N 11.530 0.091  41.891 0.790  0.500  2.403  O10 06S 26 
06S S1  S1  S 0 1 N N N 12.613 1.125  39.387 1.589  2.840  0.772  S1  06S 27 
06S O3  O3  O 0 1 N N N 10.839 2.436  41.431 1.928  -0.155 0.247  O3  06S 28 
06S C2  C2  C 0 1 N N S 10.701 3.568  40.576 3.270  -0.347 0.699  C2  06S 29 
06S C3  C3  C 0 1 N N R 11.809 4.575  40.829 4.272  0.038  -0.407 C3  06S 30 
06S C4  C4  C 0 1 N N N 11.972 5.578  39.674 5.177  1.170  0.082  C4  06S 31 
06S O1  O1  O 0 1 N N N 11.838 6.900  40.170 6.023  1.598  -0.987 O1  06S 32 
06S P   P   P 0 1 N N N 11.914 8.246  39.288 7.108  2.778  -0.829 P   06S 33 
06S S   S   S 0 1 N N N 12.943 7.922  37.522 6.109  4.610  -0.453 S   06S 34 
06S O4  O4  O 0 1 N N N 12.686 9.273  40.162 7.966  2.904  -2.185 O4  06S 35 
06S O5  O5  O 0 1 N N N 10.502 8.531  38.840 8.012  2.468  0.301  O5  06S 36 
06S O   O   O 0 1 N N N 11.406 5.233  42.050 5.061  -1.130 -0.694 O   06S 37 
06S C1  C1  C 0 1 N N R 9.481  4.304  41.063 3.547  -1.848 0.956  C1  06S 38 
06S O2  O2  O 0 1 N N N 8.392  3.416  41.327 2.325  -2.568 1.137  O2  06S 39 
06S C   C   C 0 1 N N R 10.039 4.899  42.341 4.253  -2.277 -0.355 C   06S 40 
06S N   N   N 0 1 N N N 9.247  6.033  42.751 5.097  -3.452 -0.125 N   06S 41 
06S C18 C18 C 0 1 N N N 8.467  5.938  43.918 4.852  -4.591 -0.798 C18 06S 42 
06S O15 O15 O 0 1 N N N 8.478  4.892  44.588 3.931  -4.633 -1.590 O15 06S 43 
06S C16 C16 C 0 1 N N N 9.231  7.157  42.019 6.132  -3.379 0.768  C16 06S 44 
06S C15 C15 C 0 1 N N N 8.446  8.226  42.418 6.910  -4.462 0.980  C15 06S 45 
06S C17 C17 C 0 1 N N N 7.688  8.108  43.577 6.637  -5.656 0.270  C17 06S 46 
06S N6  N6  N 0 1 N N N 7.699  6.978  44.311 5.612  -5.685 -0.606 N6  06S 47 
06S O14 O14 O 0 1 N N N 6.972  9.049  43.933 7.326  -6.646 0.444  O14 06S 48 
06S H1  H1  H 0 1 N N N 18.134 -1.862 44.992 -4.150 -1.944 1.986  H1  06S 49 
06S H2  H2  H 0 1 N N N 14.190 -2.017 38.575 -9.752 -3.287 -2.974 H2  06S 50 
06S H3  H3  H 0 1 N N N 13.988 -0.532 39.442 -8.800 -1.965 -3.386 H3  06S 51 
06S H4  H4  H 0 1 N N N 15.079 -0.235 41.497 -7.020 -1.330 -2.038 H4  06S 52 
06S H5  H5  H 0 1 N N N 16.986 0.419  44.911 -4.704 -0.452 -1.469 H5  06S 53 
06S H6  H6  H 0 1 N N N 16.489 0.931  41.963 -5.829 0.718  1.083  H6  06S 54 
06S H7  H7  H 0 1 N N N 18.657 1.024  42.825 -7.021 0.816  -0.984 H7  06S 55 
06S H8  H8  H 0 1 N N N 15.295 2.839  42.457 -4.062 2.185  1.342  H8  06S 56 
06S H9  H9  H 0 1 N N N 13.471 5.431  44.887 -2.720 6.298  1.294  H9  06S 57 
06S H10 H10 H 0 1 N N N 17.606 5.971  45.112 -4.035 5.508  -1.917 H10 06S 58 
06S H11 H11 H 0 1 N N N 14.670 2.086  45.199 -2.679 1.229  -1.172 H11 06S 59 
06S H12 H12 H 0 1 N N N 12.754 2.666  44.097 -1.538 2.471  0.729  H12 06S 60 
06S H13 H13 H 0 1 N N N 12.670 0.881  43.920 -1.914 1.089  1.785  H13 06S 61 
06S H14 H14 H 0 1 N N N 12.409 -0.145 39.195 1.635  3.015  -0.561 H14 06S 62 
06S H15 H15 H 0 1 N N N 10.625 3.303  39.511 3.457  0.236  1.602  H15 06S 63 
06S H16 H16 H 0 1 N N N 12.759 4.041  40.978 3.734  0.350  -1.302 H16 06S 64 
06S H17 H17 H 0 1 N N N 11.198 5.391  38.915 4.564  2.007  0.417  H17 06S 65 
06S H18 H18 H 0 1 N N N 12.967 5.456  39.221 5.790  0.814  0.910  H18 06S 66 
06S H19 H19 H 0 1 N N N 12.008 8.078  36.632 5.335  4.762  -1.543 H19 06S 67 
06S H20 H20 H 0 1 N N N 12.133 10.027 40.328 8.641  3.596  -2.161 H20 06S 68 
06S H21 H21 H 0 1 N N N 9.199  5.099  40.357 4.205  -1.981 1.815  H21 06S 69 
06S H22 H22 H 0 1 N N N 7.643  3.915  41.631 2.446  -3.513 1.301  H22 06S 70 
06S H23 H23 H 0 1 N N N 10.008 4.129  43.126 3.521  -2.477 -1.137 H23 06S 71 
06S H24 H24 H 0 1 N N N 9.828  7.228  41.122 6.325  -2.460 1.301  H24 06S 72 
06S H25 H25 H 0 1 N N N 8.423  9.137  41.838 7.730  -4.418 1.682  H25 06S 73 
06S H26 H26 H 0 1 N N N 7.143  6.910  45.140 5.422  -6.498 -1.100 H26 06S 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
06S S   P   SING N N 1  
06S O5  P   DOUB N N 2  
06S P   O4  SING N N 3  
06S P   O1  SING N N 4  
06S N5  C13 SING N N 5  
06S S1  P1  SING N N 6  
06S C4  O1  SING N N 7  
06S C4  C3  SING N N 8  
06S N3  C13 DOUB N N 9  
06S N3  C12 SING N N 10 
06S C13 N2  SING N N 11 
06S C2  C3  SING N N 12 
06S C2  C1  SING N N 13 
06S C2  O3  SING N N 14 
06S C3  O   SING N N 15 
06S O13 C12 DOUB N N 16 
06S C1  O2  SING N N 17 
06S C1  C   SING N N 18 
06S C12 C10 SING N N 19 
06S P1  O3  SING N N 20 
06S P1  O10 DOUB N N 21 
06S P1  O7  SING N N 22 
06S N2  C11 SING N N 23 
06S C16 C15 DOUB N N 24 
06S C16 N   SING N N 25 
06S O   C   SING N N 26 
06S C10 C11 DOUB Y N 27 
06S C10 N4  SING Y N 28 
06S O7  C9  SING N N 29 
06S C11 N1  SING Y N 30 
06S C   N   SING N N 31 
06S C15 C17 SING N N 32 
06S N   C18 SING N N 33 
06S C6  O8  SING N N 34 
06S C6  C7  SING N N 35 
06S C6  C5  SING N N 36 
06S N4  C14 DOUB Y N 37 
06S O11 P2  DOUB N N 38 
06S C7  O9  SING N N 39 
06S C7  C8  SING N N 40 
06S N1  C5  SING N N 41 
06S N1  C14 SING Y N 42 
06S C17 O14 DOUB N N 43 
06S C17 N6  SING N N 44 
06S C9  C8  SING N N 45 
06S C18 N6  SING N N 46 
06S C18 O15 DOUB N N 47 
06S C5  O6  SING N N 48 
06S O9  P2  SING N N 49 
06S C8  O6  SING N N 50 
06S P2  O12 SING N N 51 
06S P2  S2  SING N N 52 
06S C14 H1  SING N N 53 
06S N5  H2  SING N N 54 
06S N5  H3  SING N N 55 
06S N2  H4  SING N N 56 
06S C5  H5  SING N N 57 
06S C6  H6  SING N N 58 
06S O8  H7  SING N N 59 
06S C7  H8  SING N N 60 
06S S2  H9  SING N N 61 
06S O12 H10 SING N N 62 
06S C8  H11 SING N N 63 
06S C9  H12 SING N N 64 
06S C9  H13 SING N N 65 
06S S1  H14 SING N N 66 
06S C2  H15 SING N N 67 
06S C3  H16 SING N N 68 
06S C4  H17 SING N N 69 
06S C4  H18 SING N N 70 
06S S   H19 SING N N 71 
06S O4  H20 SING N N 72 
06S C1  H21 SING N N 73 
06S O2  H22 SING N N 74 
06S C   H23 SING N N 75 
06S C16 H24 SING N N 76 
06S C15 H25 SING N N 77 
06S N6  H26 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
06S SMILES           ACDLabs              12.01 "O=P(O)(S)OC1C(O)C(OC1COP(=O)(S)OC3C(OC(N2C(=O)NC(=O)C=C2)C3O)COP(=O)(O)S)n4c5NC(=NC(=O)c5nc4)N" 
06S InChI            InChI                1.03  
;InChI=1S/C19H26N7O16P3S3/c20-18-23-14-9(15(30)24-18)21-5-26(14)17-10(28)12(41-44(34,35)47)7(40-17)4-38-45(36,48)42-13-6(3-37-43(32,33)46)39-16(11(13)29)25-2-1-8(27)22-19(25)31/h1-2,5-7,10-13,16-17,28-29H,3-4H2,(H,36,48)(H,22,27,31)(H2,32,33,46)(H2,34,35,47)(H3,20,23,24,30)/t6-,7-,10-,11-,12-,13-,16-,17-,45+/m1/s1
;
06S InChIKey         InChI                1.03  PRHQISJBVGJFKN-VXGQQCRQSA-N 
06S SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P@@](S)(=O)O[C@H]4[C@@H](O)[C@@H](O[C@@H]4CO[P](O)(S)=O)N5C=CC(=O)NC5=O)[C@@H](O[P](O)(S)=O)[C@H]3O)c2N1" 
06S SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](S)(=O)O[CH]4[CH](O)[CH](O[CH]4CO[P](O)(S)=O)N5C=CC(=O)NC5=O)[CH](O[P](O)(S)=O)[CH]3O)c2N1" 
06S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O[C@@H]4[C@H](O[C@H]([C@@H]4O)N5C=CC(=O)NC5=O)COP(=O)(O)S)S)OP(=O)(O)S)O)NC(=NC2=O)N" 
06S SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(OC4C(OC(C4O)N5C=CC(=O)NC5=O)COP(=O)(O)S)S)OP(=O)(O)S)O)NC(=NC2=O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
06S "SYSTEMATIC NAME" ACDLabs              12.01 
;O-[(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-[(thiophosphonooxy)methyl]tetrahydrofuran-3-yl}oxy)(sulfanyl)phosphoryl]oxy}methyl)-4-hydroxytetrahydrofuran-3-yl] dihydrogen (S)-phosphorothioate (non-preferred name)
;
06S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-oxidanyl-2-[[oxidanyl(sulfanyl)phosphoryl]oxymethyl]oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
06S "Create component" 2014-10-17 PDBJ 
06S "Initial release"  2015-01-14 RCSB 
# 
