data_YOR
# 
_chem_comp.id                                    YOR 
_chem_comp.name                                  "N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H23 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-08 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YOR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V8I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YOR N1  N1  N 0 1 N N N N N N -22.654 -24.766 11.675 3.614  2.629  0.525  N1  YOR 1  
YOR N3  N2  N 0 1 N N N N N N -18.924 -22.690 10.400 -0.139 0.184  0.847  N3  YOR 2  
YOR C4  C1  C 0 1 Y N N N N N -22.127 -19.778 12.536 -0.298 4.176  -2.124 C4  YOR 3  
YOR C5  C2  C 0 1 Y N N N N N -21.208 -20.627 13.128 0.108  2.873  -2.341 C5  YOR 4  
YOR C6  C3  C 0 1 Y N N N N N -21.070 -21.927 12.668 0.922  2.239  -1.421 C6  YOR 5  
YOR C7  C4  C 0 1 Y N N N N N -21.853 -22.392 11.614 1.331  2.909  -0.283 C7  YOR 6  
YOR C8  C5  C 0 1 N N S N N N -21.705 -23.810 11.086 2.218  2.219  0.720  C8  YOR 7  
YOR C10 C6  C 0 1 Y N N N N N -20.518 -25.622 11.960 3.492  0.339  0.210  C10 YOR 8  
YOR C13 C7  C 0 1 N N N N N N -17.001 -27.819 13.241 1.956  -4.284 -0.187 C13 YOR 9  
YOR C15 C8  C 0 1 N N N N N N -17.129 -27.429 14.724 2.039  -5.225 1.029  C15 YOR 10 
YOR C17 C9  C 0 1 Y N N N N N -19.066 -23.939 11.019 1.169  -0.212 0.548  C17 YOR 11 
YOR C20 C10 C 0 1 Y N N N N N -18.409 -20.132 9.114  -2.823 1.152  1.190  C20 YOR 12 
YOR C21 C11 C 0 1 Y N N N N N -19.447 -19.333 6.985  -4.902 0.014  0.366  C21 YOR 13 
YOR C22 C12 C 0 1 Y N N N N N -19.943 -18.723 5.826  -6.145 -0.495 -0.020 C22 YOR 14 
YOR C24 C13 C 0 1 Y N N N N N -21.086 -20.742 5.242  -5.065 -2.328 -1.120 C24 YOR 15 
YOR C26 C14 C 0 1 Y N N N N N -19.773 -20.663 7.278  -3.736 -0.659 0.002  C26 YOR 16 
YOR C1  C15 C 0 1 N N N N N N -23.653 -21.955 9.872  1.377  4.946  1.171  C1  YOR 17 
YOR C2  C16 C 0 1 Y N N N N N -22.771 -21.525 11.019 0.926  4.213  -0.066 C2  YOR 18 
YOR C3  C17 C 0 1 Y N N N N N -22.904 -20.227 11.485 0.116  4.848  -0.989 C3  YOR 19 
YOR C9  C18 C 0 1 N N N N N N -21.967 -25.822 12.153 4.346  1.543  0.228  C9  YOR 20 
YOR O1  O1  O 0 1 N N N N N N -22.465 -26.785 12.704 5.541  1.550  0.005  O1  YOR 21 
YOR C11 C19 C 0 1 Y N N N N N -19.403 -26.392 12.305 3.771  -1.005 -0.041 C11 YOR 22 
YOR C12 C20 C 0 1 Y N N N N N -18.119 -25.932 12.008 2.751  -1.944 0.010  C12 YOR 23 
YOR N2  N3  N 0 1 N N N N N N -16.970 -26.672 12.325 3.031  -3.290 -0.241 N2  YOR 24 
YOR C14 C21 C 0 1 N N N N N N -15.604 -28.347 13.621 2.227  -5.540 -1.036 C14 YOR 25 
YOR O2  O2  O 0 1 N N N N N N -16.134 -28.446 14.958 1.720  -6.276 0.095  O2  YOR 26 
YOR C16 C22 C 0 1 Y N N N N N -17.958 -24.702 11.370 1.451  -1.550 0.296  C16 YOR 27 
YOR C18 C23 C 0 1 N N N N N N -19.302 -22.450 9.122  -1.182 -0.446 0.271  C18 YOR 28 
YOR O3  O3  O 0 1 N N N N N N -19.770 -23.359 8.460  -0.990 -1.414 -0.441 O3  YOR 29 
YOR C19 C24 C 0 1 Y N N N N N -19.144 -21.099 8.536  -2.549 0.036  0.502  C19 YOR 30 
YOR S   S1  S 0 1 Y N N N N N -18.407 -18.680 8.237  -4.494 1.449  1.296  S   YOR 31 
YOR C23 C25 C 0 1 Y N N N N N -20.756 -19.424 4.965  -6.222 -1.655 -0.755 C23 YOR 32 
YOR C25 C26 C 0 1 Y N N N N N -20.609 -21.358 6.376  -3.835 -1.843 -0.751 C25 YOR 33 
YOR C27 C27 C 0 1 Y N N N N N -20.334 -24.388 11.332 2.183  0.727  0.503  C27 YOR 34 
YOR H1  H1  H 0 1 N N N N N N -23.647 -24.651 11.714 3.951  3.536  0.596  H1  YOR 35 
YOR H2  H2  H 0 1 N N N N N N -18.524 -21.940 10.927 -0.295 0.912  1.469  H2  YOR 36 
YOR H3  H3  H 0 1 N N N N N N -22.237 -18.765 12.895 -0.934 4.671  -2.842 H3  YOR 37 
YOR H4  H4  H 0 1 N N N N N N -20.599 -20.277 13.948 -0.213 2.349  -3.230 H4  YOR 38 
YOR H5  H5  H 0 1 N N N N N N -20.349 -22.585 13.131 1.238  1.221  -1.591 H5  YOR 39 
YOR H6  H6  H 0 1 N N N N N N -21.870 -23.782 9.999  1.896  2.457  1.733  H6  YOR 40 
YOR H7  H7  H 0 1 N N N N N N -17.697 -28.617 12.943 0.967  -3.853 -0.343 H7  YOR 41 
YOR H8  H8  H 0 1 N N N N N N -16.814 -26.403 14.966 3.039  -5.305 1.457  H8  YOR 42 
YOR H9  H9  H 0 1 N N N N N N -18.113 -27.626 15.175 1.266  -5.049 1.777  H9  YOR 43 
YOR H10 H10 H 0 1 N N N N N N -17.874 -20.266 10.043 -2.070 1.788  1.631  H10 YOR 44 
YOR H11 H11 H 0 1 N N N N N N -19.686 -17.697 5.607  -7.049 0.024  0.262  H11 YOR 45 
YOR H12 H12 H 0 1 N N N N N N -21.722 -21.289 4.562  -5.133 -3.238 -1.699 H12 YOR 46 
YOR H13 H13 H 0 1 N N N N N N -23.144 -21.748 8.919  0.612  4.861  1.943  H13 YOR 47 
YOR H14 H14 H 0 1 N N N N N N -23.858 -23.033 9.951  2.308  4.509  1.533  H14 YOR 48 
YOR H15 H15 H 0 1 N N N N N N -24.601 -21.398 9.910  1.537  5.997  0.933  H15 YOR 49 
YOR H16 H16 H 0 1 N N N N N N -23.619 -19.562 11.024 -0.193 5.870  -0.823 H16 YOR 50 
YOR H17 H17 H 0 1 N N N N N N -19.535 -27.342 12.801 4.779  -1.314 -0.275 H17 YOR 51 
YOR H18 H18 H 0 1 N N N N N N -16.614 -27.019 11.457 3.937  -3.566 -0.451 H18 YOR 52 
YOR H19 H19 H 0 1 N N N N N N -15.325 -29.305 13.157 1.603  -5.614 -1.927 H19 YOR 53 
YOR H20 H20 H 0 1 N N N N N N -14.783 -27.626 13.497 3.284  -5.716 -1.238 H20 YOR 54 
YOR H21 H21 H 0 1 N N N N N N -16.965 -24.340 11.147 0.660  -2.284 0.332  H21 YOR 55 
YOR H22 H22 H 0 1 N N N N N N -21.137 -18.948 4.074  -7.186 -2.043 -1.049 H22 YOR 56 
YOR H23 H23 H 0 1 N N N N N N -20.877 -22.384 6.579  -2.939 -2.374 -1.039 H23 YOR 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YOR C23 C24 DOUB Y N 1  
YOR C23 C22 SING Y N 2  
YOR C24 C25 SING Y N 3  
YOR C22 C21 DOUB Y N 4  
YOR C25 C26 DOUB Y N 5  
YOR C21 C26 SING Y N 6  
YOR C21 S   SING Y N 7  
YOR C26 C19 SING Y N 8  
YOR S   C20 SING Y N 9  
YOR O3  C18 DOUB N N 10 
YOR C19 C20 DOUB Y N 11 
YOR C19 C18 SING N N 12 
YOR C18 N3  SING N N 13 
YOR C1  C2  SING N N 14 
YOR N3  C17 SING N N 15 
YOR C2  C3  DOUB Y N 16 
YOR C2  C7  SING Y N 17 
YOR C17 C27 DOUB Y N 18 
YOR C17 C16 SING Y N 19 
YOR C8  C27 SING N N 20 
YOR C8  C7  SING N N 21 
YOR C8  N1  SING N N 22 
YOR C27 C10 SING Y N 23 
YOR C16 C12 DOUB Y N 24 
YOR C3  C4  SING Y N 25 
YOR C7  C6  DOUB Y N 26 
YOR N1  C9  SING N N 27 
YOR C10 C9  SING N N 28 
YOR C10 C11 DOUB Y N 29 
YOR C12 C11 SING Y N 30 
YOR C12 N2  SING N N 31 
YOR C9  O1  DOUB N N 32 
YOR N2  C13 SING N N 33 
YOR C4  C5  DOUB Y N 34 
YOR C6  C5  SING Y N 35 
YOR C13 C14 SING N N 36 
YOR C13 C15 SING N N 37 
YOR C14 O2  SING N N 38 
YOR C15 O2  SING N N 39 
YOR N1  H1  SING N N 40 
YOR N3  H2  SING N N 41 
YOR C4  H3  SING N N 42 
YOR C5  H4  SING N N 43 
YOR C6  H5  SING N N 44 
YOR C8  H6  SING N N 45 
YOR C13 H7  SING N N 46 
YOR C15 H8  SING N N 47 
YOR C15 H9  SING N N 48 
YOR C20 H10 SING N N 49 
YOR C22 H11 SING N N 50 
YOR C24 H12 SING N N 51 
YOR C1  H13 SING N N 52 
YOR C1  H14 SING N N 53 
YOR C1  H15 SING N N 54 
YOR C3  H16 SING N N 55 
YOR C11 H17 SING N N 56 
YOR N2  H18 SING N N 57 
YOR C14 H19 SING N N 58 
YOR C14 H20 SING N N 59 
YOR C16 H21 SING N N 60 
YOR C23 H22 SING N N 61 
YOR C25 H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YOR SMILES           ACDLabs              12.01 "Cc1ccccc1C1NC(=O)c2cc(NC3COC3)cc(NC(=O)c3csc4ccccc43)c21"                                                                                                                                          
YOR InChI            InChI                1.06  "InChI=1S/C27H23N3O3S/c1-15-6-2-3-7-18(15)25-24-20(26(31)30-25)10-16(28-17-12-33-13-17)11-22(24)29-27(32)21-14-34-23-9-5-4-8-19(21)23/h2-11,14,17,25,28H,12-13H2,1H3,(H,29,32)(H,30,31)/t25-/m0/s1" 
YOR InChIKey         InChI                1.06  GQTFJOHRQMWEAZ-VWLOTQADSA-N                                                                                                                                                                         
YOR SMILES_CANONICAL CACTVS               3.385 "Cc1ccccc1[C@@H]2NC(=O)c3cc(NC4COC4)cc(NC(=O)c5csc6ccccc56)c23"                                                                                                                                     
YOR SMILES           CACTVS               3.385 "Cc1ccccc1[CH]2NC(=O)c3cc(NC4COC4)cc(NC(=O)c5csc6ccccc56)c23"                                                                                                                                       
YOR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1[C@H]2c3c(cc(cc3NC(=O)c4csc5c4cccc5)NC6COC6)C(=O)N2"                                                                                                                                      
YOR SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2c3c(cc(cc3NC(=O)c4csc5c4cccc5)NC6COC6)C(=O)N2"                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YOR "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(3S)-3-(2-methylphenyl)-6-[(oxetan-3-yl)amino]-1-oxo-2,3-dihydro-1H-isoindol-4-yl}-1-benzothiophene-3-carboxamide"           
YOR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3~{S})-3-(2-methylphenyl)-6-(oxetan-3-ylamino)-1-oxidanylidene-2,3-dihydroisoindol-4-yl]-1-benzothiophene-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YOR "Create component" 2023-12-08 RCSB 
YOR "Initial release"  2024-03-20 RCSB 
# 
