data_XYR
# 
_chem_comp.id                                    XYR 
_chem_comp.name                                  "N-{(1R)-1-[(3P,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 F2 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-14 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        522.589 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XYR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UUU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XYR C1   C1  C 0 1 N N N N N N 47.582 32.826 1.057  -4.142 4.956  -0.113 C1   XYR 1  
XYR C2   C2  C 0 1 Y N N N N N 48.705 33.758 0.683  -4.372 3.468  -0.061 C2   XYR 2  
XYR C3   C3  C 0 1 Y N N N N N 49.934 33.292 0.182  -3.330 2.589  -0.361 C3   XYR 3  
XYR C4   C4  C 0 1 N N N N N N 50.180 31.824 0.019  -1.998 3.116  -0.730 C4   XYR 4  
XYR C6   C5  C 0 1 N N R N N N 51.161 29.779 0.956  0.357  2.792  -1.262 C6   XYR 5  
XYR C9   C6  C 0 1 Y N N N N N 53.434 29.669 -0.173 1.220  0.469  -0.930 C9   XYR 6  
XYR C10  C7  C 0 1 Y N N N N N 54.266 29.270 -1.214 2.202  -0.426 -0.509 C10  XYR 7  
XYR C11  C8  C 0 1 Y N N N N N 55.691 29.661 -1.212 1.986  -1.888 -0.651 C11  XYR 8  
XYR C12  C9  C 0 1 Y N N N N N 56.278 30.656 -0.466 2.857  -2.871 -0.283 C12  XYR 9  
XYR C14  C10 C 0 1 N N N N N N 58.593 31.561 -0.312 2.875  -5.376 -0.348 C14  XYR 10 
XYR N17  N1  N 0 1 Y N N N N N 57.904 29.737 -1.707 1.027  -3.805 -1.140 N17  XYR 11 
XYR C20  C11 C 0 1 Y N N N N N 52.392 28.213 -2.293 3.582  1.424  0.173  C20  XYR 12 
XYR C18  C12 C 0 1 Y N N N N N 56.756 29.128 -1.962 0.841  -2.512 -1.184 C18  XYR 13 
XYR C19  C13 C 0 1 Y N N N N N 53.743 28.538 -2.275 3.385  0.053  0.043  C19  XYR 14 
XYR C21  C14 C 0 1 Y N N N N N 51.812 27.505 -3.464 4.845  1.943  0.757  C21  XYR 15 
XYR C22  C15 C 0 1 Y N N N N N 52.401 27.304 -4.692 5.886  1.194  1.219  C22  XYR 16 
XYR C24  C16 C 0 1 N N N N N N 51.676 26.235 -6.848 8.124  1.663  2.245  C24  XYR 17 
XYR C26  C17 C 0 1 Y N N N N N 50.538 26.921 -3.600 5.187  3.299  0.928  C26  XYR 18 
XYR C27  C18 C 0 1 Y N N N N N 51.571 28.619 -1.243 2.598  2.311  -0.261 C27  XYR 19 
XYR C29  C19 C 0 1 Y N N N N N 50.931 34.202 -0.185 -3.549 1.212  -0.312 C29  XYR 20 
XYR C30  C20 C 0 1 Y N N N N N 50.712 35.566 -0.056 -4.799 0.726  0.034  C30  XYR 21 
XYR C32  C21 C 0 1 N N N N N N 52.922 35.993 -0.872 -6.329 -1.045 0.448  C32  XYR 22 
XYR C33  C22 C 0 1 N N N N N N 53.940 36.870 -0.274 -6.382 -2.574 0.449  C33  XYR 23 
XYR C35  C23 C 0 1 N N N N N N 54.509 38.142 -2.296 -5.990 -2.727 2.833  C35  XYR 24 
XYR C36  C24 C 0 1 N N N N N N 54.781 39.182 -0.097 -5.336 -4.550 1.380  C36  XYR 25 
XYR C37  C25 C 0 1 Y N N N N N 49.509 36.034 0.436  -5.829 1.608  0.331  C37  XYR 26 
XYR C38  C26 C 0 1 Y N N N N N 48.526 35.134 0.798  -5.612 2.973  0.288  C38  XYR 27 
XYR C7   C27 C 0 1 N N N N N N 51.689 29.362 2.324  0.438  2.958  -2.781 C7   XYR 28 
XYR C8   C28 C 0 1 Y N N N N N 52.081 29.351 -0.174 1.422  1.829  -0.804 C8   XYR 29 
XYR F15  F1  F 0 1 N N N N N N 58.855 32.492 -1.252 2.404  -6.272 -1.314 F15  XYR 30 
XYR F16  F2  F 0 1 N N N N N N 59.748 30.885 -0.145 4.268  -5.286 -0.435 F16  XYR 31 
XYR N13  N2  N 0 1 Y N N N N N 57.584 30.676 -0.783 2.285  -4.055 -0.579 N13  XYR 32 
XYR N23  N3  N 0 1 Y N N N N N 51.512 26.651 -5.463 6.834  2.043  1.664  N23  XYR 33 
XYR N25  N4  N 0 1 Y N N N N N 50.361 26.407 -4.808 6.374  3.351  1.472  N25  XYR 34 
XYR N34  N5  N 0 1 N N N N N N 53.985 38.220 -0.907 -5.497 -3.094 1.499  N34  XYR 35 
XYR N5   N6  N 0 1 N N N N N N 50.921 31.225 0.962  -0.962 2.271  -0.897 N5   XYR 36 
XYR O28  O1  O 0 1 N N N N N N 49.707 31.207 -0.931 -1.839 4.311  -0.882 O28  XYR 37 
XYR O31  O2  O 0 1 N N N N N N 51.663 36.488 -0.406 -5.016 -0.614 0.083  O31  XYR 38 
XYR H1B  H1  H 0 1 N N N N N N 47.670 32.552 2.119  -4.245 5.304  -1.141 H1B  XYR 39 
XYR H1A  H2  H 0 1 N N N N N N 46.618 33.327 0.887  -4.876 5.460  0.516  H1A  XYR 40 
XYR H1C  H3  H 0 1 N N N N N N 47.638 31.918 0.438  -3.138 5.181  0.248  H1C  XYR 41 
XYR H6   H4  H 0 1 N N N N N N 50.196 29.272 0.807  0.511  3.759  -0.782 H6   XYR 42 
XYR H9   H5  H 0 1 N N N N N N 53.846 30.235 0.649  0.301  0.098  -1.360 H9   XYR 43 
XYR H12  H6  H 0 1 N N N N N N 55.782 31.302 0.243  3.830  -2.727 0.164  H12  XYR 44 
XYR H14  H7  H 0 1 N N N N N N 58.270 32.030 0.629  2.595  -5.731 0.643  H14  XYR 45 
XYR H18  H8  H 0 1 N N N N N N 56.649 28.315 -2.665 -0.035 -2.010 -1.565 H18  XYR 46 
XYR H19  H9  H 0 1 N N N N N N 54.386 28.223 -3.084 4.149  -0.637 0.371  H19  XYR 47 
XYR H22  H10 H 0 1 N N N N N N 53.394 27.613 -4.983 5.942  0.115  1.227  H22  XYR 48 
XYR H24C H11 H 0 0 N N N N N N 50.758 25.737 -7.193 8.870  1.584  1.454  H24C XYR 49 
XYR H24B H12 H 0 0 N N N N N N 51.873 27.117 -7.475 8.436  2.420  2.964  H24B XYR 50 
XYR H24A H13 H 0 0 N N N N N N 52.522 25.536 -6.923 8.026  0.701  2.749  H24A XYR 51 
XYR H26  H14 H 0 1 N N N N N N 49.796 26.895 -2.816 4.576  4.146  0.657  H26  XYR 52 
XYR H27  H15 H 0 1 N N N N N N 50.522 28.362 -1.259 2.754  3.375  -0.172 H27  XYR 53 
XYR H29  H16 H 0 1 N N N N N N 51.874 33.842 -0.570 -2.747 0.527  -0.543 H29  XYR 54 
XYR H32B H17 H 0 0 N N N N N N 53.071 34.954 -0.544 -7.052 -0.657 -0.270 H32B XYR 55 
XYR H32A H18 H 0 0 N N N N N N 52.971 36.042 -1.970 -6.571 -0.673 1.444  H32A XYR 56 
XYR H33B H19 H 0 0 N N N N N N 53.715 36.991 0.796  -7.404 -2.902 0.640  H33B XYR 57 
XYR H33A H20 H 0 0 N N N N N N 54.925 36.395 -0.390 -6.055 -2.950 -0.521 H33A XYR 58 
XYR H35A H21 H 0 0 N N N N N N 54.531 39.149 -2.737 -6.987 -3.142 2.979  H35A XYR 59 
XYR H35C H22 H 0 0 N N N N N N 55.527 37.726 -2.281 -5.316 -3.124 3.592  H35C XYR 60 
XYR H35B H23 H 0 0 N N N N N N 53.857 37.492 -2.898 -6.033 -1.641 2.918  H35B XYR 61 
XYR H36A H24 H 0 0 N N N N N N 54.790 40.162 -0.596 -4.904 -4.789 0.408  H36A XYR 62 
XYR H36B H25 H 0 0 N N N N N N 54.329 39.283 0.901  -4.676 -4.908 2.170  H36B XYR 63 
XYR H36C H26 H 0 0 N N N N N N 55.812 38.812 0.003  -6.309 -5.031 1.473  H36C XYR 64 
XYR H37  H27 H 0 1 N N N N N N 49.338 37.096 0.537  -6.803 1.227  0.601  H37  XYR 65 
XYR H38  H28 H 0 1 N N N N N N 47.589 35.509 1.182  -6.418 3.654  0.520  H38  XYR 66 
XYR H7C  H29 H 0 1 N N N N N N 51.873 28.278 2.332  0.284  1.991  -3.260 H7C  XYR 67 
XYR H7B  H30 H 0 1 N N N N N N 52.629 29.895 2.532  -0.333 3.655  -3.112 H7B  XYR 68 
XYR H7A  H31 H 0 1 N N N N N N 50.946 29.613 3.096  1.419  3.346  -3.052 H7A  XYR 69 
XYR H5   H33 H 0 1 N N N N N N 51.322 31.781 1.691  -1.090 1.317  -0.775 H5   XYR 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XYR C1  C2   SING N N 1  
XYR C2  C3   DOUB Y N 2  
XYR C3  C4   SING N N 3  
XYR C4  N5   SING N N 4  
XYR N5  C6   SING N N 5  
XYR C6  C7   SING N N 6  
XYR C6  C8   SING N N 7  
XYR C8  C9   DOUB Y N 8  
XYR C9  C10  SING Y N 9  
XYR C10 C11  SING N N 10 
XYR C11 C12  DOUB Y N 11 
XYR C12 N13  SING Y N 12 
XYR N13 C14  SING N N 13 
XYR C14 F15  SING N N 14 
XYR C14 F16  SING N N 15 
XYR N13 N17  SING Y N 16 
XYR N17 C18  DOUB Y N 17 
XYR C10 C19  DOUB Y N 18 
XYR C19 C20  SING Y N 19 
XYR C20 C21  SING N N 20 
XYR C21 C22  DOUB Y N 21 
XYR C22 N23  SING Y N 22 
XYR N23 C24  SING N N 23 
XYR N23 N25  SING Y N 24 
XYR N25 C26  DOUB Y N 25 
XYR C20 C27  DOUB Y N 26 
XYR C4  O28  DOUB N N 27 
XYR C3  C29  SING Y N 28 
XYR C29 C30  DOUB Y N 29 
XYR C30 O31  SING N N 30 
XYR O31 C32  SING N N 31 
XYR C32 C33  SING N N 32 
XYR C33 N34  SING N N 33 
XYR N34 C35  SING N N 34 
XYR N34 C36  SING N N 35 
XYR C30 C37  SING Y N 36 
XYR C37 C38  DOUB Y N 37 
XYR C38 C2   SING Y N 38 
XYR C27 C8   SING Y N 39 
XYR C18 C11  SING Y N 40 
XYR C26 C21  SING Y N 41 
XYR C1  H1B  SING N N 42 
XYR C1  H1A  SING N N 43 
XYR C1  H1C  SING N N 44 
XYR C6  H6   SING N N 45 
XYR C9  H9   SING N N 46 
XYR C12 H12  SING N N 47 
XYR C14 H14  SING N N 48 
XYR C18 H18  SING N N 49 
XYR C19 H19  SING N N 50 
XYR C22 H22  SING N N 51 
XYR C24 H24C SING N N 52 
XYR C24 H24B SING N N 53 
XYR C24 H24A SING N N 54 
XYR C26 H26  SING N N 55 
XYR C27 H27  SING N N 56 
XYR C29 H29  SING N N 57 
XYR C32 H32B SING N N 58 
XYR C32 H32A SING N N 59 
XYR C33 H33B SING N N 60 
XYR C33 H33A SING N N 61 
XYR C35 H35A SING N N 62 
XYR C35 H35C SING N N 63 
XYR C35 H35B SING N N 64 
XYR C36 H36A SING N N 65 
XYR C36 H36B SING N N 66 
XYR C36 H36C SING N N 67 
XYR C37 H37  SING N N 68 
XYR C38 H38  SING N N 69 
XYR C7  H7C  SING N N 70 
XYR C7  H7B  SING N N 71 
XYR C7  H7A  SING N N 72 
XYR N5  H5   SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XYR SMILES           ACDLabs              12.01 "FC(F)n1cc(cn1)c1cc(cc(c1)c1cn(C)nc1)C(C)NC(=O)c1cc(OCCN(C)C)ccc1C"                                                                                                                   
XYR InChI            InChI                1.06  "InChI=1S/C28H32F2N6O2/c1-18-6-7-25(38-9-8-34(3)4)13-26(18)27(37)33-19(2)20-10-21(23-14-31-35(5)16-23)12-22(11-20)24-15-32-36(17-24)28(29)30/h6-7,10-17,19,28H,8-9H2,1-5H3,(H,33,37)" 
XYR InChIKey         InChI                1.06  RPSOBHALDUJHHY-UHFFFAOYSA-N                                                                                                                                                           
XYR SMILES_CANONICAL CACTVS               3.385 "C[C@@H](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(C)c4"                                                                                                              
XYR SMILES           CACTVS               3.385 "C[CH](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(C)c4"                                                                                                                
XYR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(c4)C)OCCN(C)C"                                                                                                               
XYR SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cc(cc(c2)c3cnn(c3)C(F)F)c4cnn(c4)C)OCCN(C)C"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XYR "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(1R)-1-[(3P,5M)-3-[1-(difluoromethyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)phenyl]ethyl}-5-[2-(dimethylamino)ethoxy]-2-methylbenzamide" 
XYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R})-1-[3-[1-[bis(fluoranyl)methyl]pyrazol-4-yl]-5-(1-methylpyrazol-4-yl)phenyl]ethyl]-5-[2-(dimethylamino)ethoxy]-2-methyl-benzamide"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XYR "Create component" 2023-11-14 RCSB 
XYR "Initial release"  2024-04-03 RCSB 
# 
