data_XVR
#

_chem_comp.id                                   XVR
_chem_comp.name                                 "(5S)-5-[(6R)-6-hydroxy-6-methyl-5-oxooctyl]furan-2(5H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H20 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-29
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       240.295
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XVR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6WP9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XVR  O15  O1   O  0  1  N  N  N   -9.868  34.469  -29.528  -2.596   1.121   1.201  O15  XVR   1  
XVR  C11  C1   C  0  1  N  N  N  -10.451  34.546  -28.444  -2.642   0.285   0.331  C11  XVR   2  
XVR  C12  C2   C  0  1  N  N  R  -10.101  33.558  -27.341  -3.960  -0.340  -0.045  C12  XVR   3  
XVR  O16  O2   O  0  1  N  N  N   -8.944  32.807  -27.749  -3.936  -0.709  -1.425  O16  XVR   4  
XVR  C13  C3   C  0  1  N  N  N  -11.249  32.589  -27.036  -5.088   0.666   0.195  C13  XVR   5  
XVR  C14  C4   C  0  1  N  N  N  -11.835  31.879  -28.239  -6.437  -0.008  -0.068  C14  XVR   6  
XVR  C10  C5   C  0  1  N  N  N  -11.514  35.611  -28.202  -1.381  -0.130  -0.382  C10  XVR   7  
XVR  C9   C6   C  0  1  N  N  N  -12.093  36.175  -29.496  -0.194   0.654   0.182  C9   XVR   8  
XVR  C8   C7   C  0  1  N  N  N  -12.624  37.569  -29.208   1.086   0.233  -0.542  C8   XVR   9  
XVR  C7   C8   C  0  1  N  N  N  -13.461  38.100  -30.355   2.273   1.018   0.022  C7   XVR  10  
XVR  C4   C9   C  0  1  N  N  S  -14.087  39.436  -29.968   3.553   0.596  -0.702  C4   XVR  11  
XVR  C3   C10  C  0  1  N  N  N  -14.693  40.110  -31.182   4.723   1.415  -0.209  C3   XVR  12  
XVR  C2   C11  C  0  1  N  N  N  -16.013  40.212  -31.077   5.597   0.563   0.320  C2   XVR  13  
XVR  O5   O3   O  0  1  N  N  N  -15.177  39.170  -29.076   3.872  -0.789  -0.391  O5   XVR  14  
XVR  C1   C12  C  0  1  N  N  N  -16.348  39.608  -29.786   5.076  -0.803   0.211  C1   XVR  15  
XVR  O6   O4   O  0  1  N  N  N  -17.457  39.473  -29.328   5.648  -1.801   0.605  O6   XVR  16  
XVR  C5   C13  C  0  1  N  N  N   -9.738  34.295  -26.044  -4.198  -1.586   0.812  C5   XVR  17  
XVR  H1   H1   H  0  1  N  N  N   -8.702  33.053  -28.634  -3.790   0.033  -2.028  H1   XVR  18  
XVR  H2   H2   H  0  1  N  N  N  -12.056  33.159  -26.552  -5.051   1.014   1.227  H2   XVR  19  
XVR  H3   H3   H  0  1  N  N  N  -10.872  31.824  -26.341  -4.968   1.514  -0.480  H3   XVR  20  
XVR  H4   H4   H  0  1  N  N  N  -12.646  31.212  -27.912  -7.240   0.709   0.102  H4   XVR  21  
XVR  H5   H5   H  0  1  N  N  N  -12.234  32.622  -28.945  -6.474  -0.356  -1.100  H5   XVR  22  
XVR  H6   H6   H  0  1  N  N  N  -11.051  31.287  -28.733  -6.557  -0.855   0.606  H6   XVR  23  
XVR  H7   H7   H  0  1  N  N  N  -11.062  36.435  -27.631  -1.214  -1.197  -0.234  H7   XVR  24  
XVR  H8   H8   H  0  1  N  N  N  -12.331  35.165  -27.617  -1.480   0.078  -1.447  H8   XVR  25  
XVR  H9   H9   H  0  1  N  N  N  -12.911  35.530  -29.850  -0.361   1.721   0.034  H9   XVR  26  
XVR  H10  H10  H  0  1  N  N  N  -11.308  36.227  -30.264  -0.094   0.446   1.247  H10  XVR  27  
XVR  H11  H11  H  0  1  N  N  N  -11.774  38.247  -29.044   1.253  -0.834  -0.394  H11  XVR  28  
XVR  H12  H12  H  0  1  N  N  N  -13.245  37.533  -28.301   0.986   0.441  -1.607  H12  XVR  29  
XVR  H13  H13  H  0  1  N  N  N  -14.258  37.379  -30.589   2.106   2.085  -0.126  H13  XVR  30  
XVR  H14  H14  H  0  1  N  N  N  -12.821  38.240  -31.239   2.372   0.809   1.087  H14  XVR  31  
XVR  H15  H15  H  0  1  N  N  N  -13.334  40.089  -29.503   3.433   0.721  -1.778  H15  XVR  32  
XVR  H16  H16  H  0  1  N  N  N  -14.122  40.464  -32.028   4.830   2.488  -0.274  H16  XVR  33  
XVR  H17  H17  H  0  1  N  N  N  -16.695  40.648  -31.792   6.544   0.835   0.763  H17  XVR  34  
XVR  H18  H18  H  0  1  N  N  N   -9.489  33.562  -25.262  -4.216  -1.304   1.865  H18  XVR  35  
XVR  H19  H19  H  0  1  N  N  N   -8.871  34.948  -26.224  -5.151  -2.037   0.540  H19  XVR  36  
XVR  H20  H20  H  0  1  N  N  N  -10.594  34.904  -25.717  -3.394  -2.302   0.641  H20  XVR  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XVR  C3   C2   DOUB  N  N   1  
XVR  C3   C4   SING  N  N   2  
XVR  C2   C1   SING  N  N   3  
XVR  C7   C4   SING  N  N   4  
XVR  C7   C8   SING  N  N   5  
XVR  C4   O5   SING  N  N   6  
XVR  C1   O6   DOUB  N  N   7  
XVR  C1   O5   SING  N  N   8  
XVR  O15  C11  DOUB  N  N   9  
XVR  C9   C8   SING  N  N  10  
XVR  C9   C10  SING  N  N  11  
XVR  C11  C10  SING  N  N  12  
XVR  C11  C12  SING  N  N  13  
XVR  C14  C13  SING  N  N  14  
XVR  O16  C12  SING  N  N  15  
XVR  C12  C13  SING  N  N  16  
XVR  C12  C5   SING  N  N  17  
XVR  O16  H1   SING  N  N  18  
XVR  C13  H2   SING  N  N  19  
XVR  C13  H3   SING  N  N  20  
XVR  C14  H4   SING  N  N  21  
XVR  C14  H5   SING  N  N  22  
XVR  C14  H6   SING  N  N  23  
XVR  C10  H7   SING  N  N  24  
XVR  C10  H8   SING  N  N  25  
XVR  C9   H9   SING  N  N  26  
XVR  C9   H10  SING  N  N  27  
XVR  C8   H11  SING  N  N  28  
XVR  C8   H12  SING  N  N  29  
XVR  C7   H13  SING  N  N  30  
XVR  C7   H14  SING  N  N  31  
XVR  C4   H15  SING  N  N  32  
XVR  C3   H16  SING  N  N  33  
XVR  C2   H17  SING  N  N  34  
XVR  C5   H18  SING  N  N  35  
XVR  C5   H19  SING  N  N  36  
XVR  C5   H20  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XVR  SMILES            ACDLabs               12.01  "O=C(CCCCC1OC(C=C1)=O)C(CC)(C)O"  
XVR  InChI             InChI                 1.03   "InChI=1S/C13H20O4/c1-3-13(2,16)11(14)7-5-4-6-10-8-9-12(15)17-10/h8-10,16H,3-7H2,1-2H3/t10-,13+/m0/s1"  
XVR  InChIKey          InChI                 1.03   UOBYXVHBYDUQMN-GXFFZTMASA-N  
XVR  SMILES_CANONICAL  CACTVS                3.385  "CC[C@@](C)(O)C(=O)CCCC[C@@H]1OC(=O)C=C1"  
XVR  SMILES            CACTVS                3.385  "CC[C](C)(O)C(=O)CCCC[CH]1OC(=O)C=C1"  
XVR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@](C)(C(=O)CCCC[C@H]1C=CC(=O)O1)O"  
XVR  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C)(C(=O)CCCCC1C=CC(=O)O1)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XVR  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5S)-5-[(6R)-6-hydroxy-6-methyl-5-oxooctyl]furan-2(5H)-one"  
XVR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[(6~{R})-6-methyl-6-oxidanyl-5-oxidanylidene-octyl]-2~{H}-furan-5-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XVR  "Create component"  2020-04-29  RCSB  
XVR  "Initial release"   2020-07-22  RCSB  
##
