data_X2R
# 
_chem_comp.id                                    X2R 
_chem_comp.name                                  "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(1~{R})-2-methyl-1-sulfo-propyl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H25 N3 O7 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        399.484 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X2R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P7P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X2R C8  C1  C 0 1 N N N N N N 55.564 75.341 8.215  3.000  -0.376 -0.532 C8  X2R 1  
X2R C5  C2  C 0 1 N N N N N N 50.195 79.450 11.209 -5.019 -1.227 1.366  C5  X2R 2  
X2R C4  C3  C 0 1 N N R N N N 50.437 79.473 9.669  -4.212 -0.798 0.139  C4  X2R 3  
X2R C3  C4  C 0 1 N N N N N N 52.380 78.474 8.578  -1.826 -0.320 0.015  C3  X2R 4  
X2R C2  C5  C 0 1 N N N N N N 53.775 79.593 6.833  -0.814 1.937  0.192  C2  X2R 5  
X2R C1  C6  C 0 1 N N R N N N 53.800 78.686 8.058  -0.606 0.445  0.458  C1  X2R 6  
X2R C6  C7  C 0 1 N N N N N N 50.347 78.043 11.774 -6.178 -2.124 0.927  C6  X2R 7  
X2R C10 C8  C 0 1 N N N N N N 55.652 72.818 8.402  5.489  -0.598 -0.498 C10 X2R 8  
X2R C12 C9  C 0 1 N N N N N N 55.706 70.325 8.556  7.945  -0.922 -0.395 C12 X2R 9  
X2R N   N1  N 0 1 N N N N N N 54.436 77.417 7.751  0.563  -0.026 -0.289 N   X2R 10 
X2R C   C10 C 0 1 N N N N N N 54.916 76.612 8.703  1.798  0.108  0.237  C   X2R 11 
X2R O   O1  O 0 1 N N N N N N 54.841 76.880 9.900  1.940  0.619  1.327  O   X2R 12 
X2R C11 C11 C 0 1 N N S N N N 54.997 71.586 9.028  6.756  -0.329 0.316  C11 X2R 13 
X2R C7  C12 C 0 1 N N N N N N 51.113 80.419 11.941 -4.113 -1.999 2.327  C7  X2R 14 
X2R C9  C13 C 0 1 N N N N N N 54.913 74.091 8.794  4.267  -0.107 0.282  C9  X2R 15 
X2R N1  N2  N 0 1 N N N N N N 51.874 79.447 9.343  -3.026 -0.055 0.569  N1  X2R 16 
X2R N2  N3  N 0 1 N N N N N N 55.029 71.699 10.497 6.945  1.121  0.461  N2  X2R 17 
X2R O1  O2  O 0 1 N N N N N N 50.515 80.833 7.530  -5.911 1.240  -0.142 O1  X2R 18 
X2R O2  O3  O 0 1 N N N N N N 48.380 80.519 8.500  -4.531 0.620  -2.099 O2  X2R 19 
X2R O3  O4  O 0 1 N N N N N N 50.014 82.030 9.501  -6.348 -0.657 -1.412 O3  X2R 20 
X2R O4  O5  O 0 1 N N N N N N 51.760 77.454 8.292  -1.729 -1.174 -0.840 O4  X2R 21 
X2R O5  O6  O 0 1 N N N N N N 55.595 70.129 7.269  8.668  -0.215 -1.056 O5  X2R 22 
X2R O6  O7  O 0 1 N N N N N N 56.312 69.595 9.306  8.200  -2.236 -0.294 O6  X2R 23 
X2R S   S1  S 0 1 N N N N N N 53.180 78.781 5.327  0.655  2.857  0.725  S   X2R 24 
X2R S1  S2  S 0 1 N N N N N N 49.733 80.838 8.785  -5.238 0.260  -0.920 S1  X2R 25 
X2R H1  H1  H 0 1 N N N N N N 55.485 75.304 7.119  2.907  -1.447 -0.715 H1  X2R 26 
X2R H2  H2  H 0 1 N N N N N N 56.625 75.352 8.506  3.060  0.152  -1.483 H2  X2R 27 
X2R H3  H3  H 0 1 N N N N N N 49.158 79.772 11.383 -5.413 -0.343 1.868  H3  X2R 28 
X2R H4  H4  H 0 1 N N N N N N 49.964 78.575 9.245  -3.904 -1.682 -0.421 H4  X2R 29 
X2R H5  H5  H 0 1 N N N N N N 54.797 79.955 6.650  -0.975 2.096  -0.874 H5  X2R 30 
X2R H6  H6  H 0 1 N N N N N N 53.116 80.447 7.049  -1.684 2.287  0.748  H6  X2R 31 
X2R H7  H7  H 0 1 N N N N N N 54.377 79.193 8.845  -0.444 0.285  1.524  H7  X2R 32 
X2R H8  H8  H 0 1 N N N N N N 50.170 78.062 12.860 -6.665 -2.545 1.806  H8  X2R 33 
X2R H9  H9  H 0 1 N N N N N N 49.616 77.375 11.295 -6.899 -1.534 0.359  H9  X2R 34 
X2R H10 H10 H 0 1 N N N N N N 51.365 77.676 11.575 -5.796 -2.931 0.301  H10 X2R 35 
X2R H11 H11 H 0 1 N N N N N N 55.636 72.716 7.307  5.549  -0.070 -1.450 H11 X2R 36 
X2R H12 H12 H 0 1 N N N N N N 56.694 72.886 8.749  5.395  -1.669 -0.682 H12 X2R 37 
X2R H13 H13 H 0 1 N N N N N N 54.517 77.136 6.795  0.449  -0.434 -1.161 H13 X2R 38 
X2R H14 H14 H 0 1 N N N N N N 53.950 71.543 8.693  6.658  -0.783 1.302  H14 X2R 39 
X2R H15 H15 H 0 1 N N N N N N 50.910 80.372 13.021 -3.719 -2.882 1.825  H15 X2R 40 
X2R H16 H16 H 0 1 N N N N N N 52.161 80.144 11.752 -3.287 -1.360 2.640  H16 X2R 41 
X2R H17 H17 H 0 1 N N N N N N 50.931 81.441 11.578 -4.688 -2.304 3.202  H17 X2R 42 
X2R H18 H18 H 0 1 N N N N N N 54.906 74.172 9.891  4.361  0.964  0.466  H18 X2R 43 
X2R H19 H19 H 0 1 N N N N N N 53.879 74.027 8.424  4.207  -0.635 1.234  H19 X2R 44 
X2R H20 H20 H 0 1 N N N N N N 52.476 80.163 9.697  -3.103 0.628  1.254  H20 X2R 45 
X2R H21 H21 H 0 1 N N N N N N 54.600 70.892 10.903 7.039  1.565  -0.440 H21 X2R 46 
X2R H22 H22 H 0 1 N N N N N N 55.978 71.763 10.806 6.192  1.533  0.991  H22 X2R 47 
X2R H24 H24 H 0 1 N N N N N N 56.684 68.873 8.814  8.974  -2.571 -0.768 H24 X2R 48 
X2R H25 H25 H 0 1 N N N N N N 53.254 79.742 4.454  0.336  4.131  0.436  H25 X2R 49 
X2R H23 H23 H 0 1 N N N N N N 50.639 82.553 9.013  -6.984 -0.225 -1.998 H23 X2R 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X2R S   C2  SING N N 1  
X2R C2  C1  SING N N 2  
X2R O5  C12 DOUB N N 3  
X2R O1  S1  DOUB N N 4  
X2R N   C1  SING N N 5  
X2R N   C   SING N N 6  
X2R C1  C3  SING N N 7  
X2R C8  C   SING N N 8  
X2R C8  C9  SING N N 9  
X2R O4  C3  DOUB N N 10 
X2R C10 C9  SING N N 11 
X2R C10 C11 SING N N 12 
X2R O2  S1  DOUB N N 13 
X2R C12 C11 SING N N 14 
X2R C12 O6  SING N N 15 
X2R C3  N1  SING N N 16 
X2R C   O   DOUB N N 17 
X2R S1  O3  SING N N 18 
X2R S1  C4  SING N N 19 
X2R C11 N2  SING N N 20 
X2R N1  C4  SING N N 21 
X2R C4  C5  SING N N 22 
X2R C5  C6  SING N N 23 
X2R C5  C7  SING N N 24 
X2R C8  H1  SING N N 25 
X2R C8  H2  SING N N 26 
X2R C5  H3  SING N N 27 
X2R C4  H4  SING N N 28 
X2R C2  H5  SING N N 29 
X2R C2  H6  SING N N 30 
X2R C1  H7  SING N N 31 
X2R C6  H8  SING N N 32 
X2R C6  H9  SING N N 33 
X2R C6  H10 SING N N 34 
X2R C10 H11 SING N N 35 
X2R C10 H12 SING N N 36 
X2R N   H13 SING N N 37 
X2R C11 H14 SING N N 38 
X2R C7  H15 SING N N 39 
X2R C7  H16 SING N N 40 
X2R C7  H17 SING N N 41 
X2R C9  H18 SING N N 42 
X2R C9  H19 SING N N 43 
X2R N1  H20 SING N N 44 
X2R N2  H21 SING N N 45 
X2R N2  H22 SING N N 46 
X2R O6  H24 SING N N 47 
X2R S   H25 SING N N 48 
X2R O3  H23 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X2R InChI            InChI                1.06  "InChI=1S/C13H25N3O7S2/c1-7(2)12(25(21,22)23)16-11(18)9(6-24)15-10(17)5-3-4-8(14)13(19)20/h7-9,12,24H,3-6,14H2,1-2H3,(H,15,17)(H,16,18)(H,19,20)(H,21,22,23)/t8-,9-,12+/m0/s1" 
X2R InChIKey         InChI                1.06  SLYPAEUXHCDCFQ-HOTUBEGUSA-N                                                                                                                                                    
X2R SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)[C@H](CS)NC(=O)CCC[C@H](N)C(O)=O)[S](O)(=O)=O"                                                                                                               
X2R SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)[CH](CS)NC(=O)CCC[CH](N)C(O)=O)[S](O)(=O)=O"                                                                                                                  
X2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H](NC(=O)[C@H](CS)NC(=O)CCC[C@@H](C(=O)O)N)S(=O)(=O)O"                                                                                                                
X2R SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(NC(=O)C(CS)NC(=O)CCCC(C(=O)O)N)S(=O)(=O)O"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           X2R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(1~{R})-2-methyl-1-sulfo-propyl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X2R "Create component" 2023-05-31 PDBE 
X2R "Initial release"  2024-06-12 RCSB 
# 
