data_U5R
# 
_chem_comp.id                                    U5R 
_chem_comp.name                                  "1-(2,6-dideoxy-2-fluoro-5-O-phosphono-beta-D-allofuranosyl)pyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 F N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-01 
_chem_comp.pdbx_modified_date                    2016-06-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U5R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DER 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U5R O2    O1  O 0 1 N N N 7.134 -21.078 -6.323  -1.712 1.189  -0.967 O2    U5R 1  
U5R C2    C1  C 0 1 N N N 6.198 -20.331 -6.603  -2.755 0.758  -0.515 C2    U5R 2  
U5R N3    N1  N 0 1 N N N 4.880 -20.785 -6.444  -3.922 1.301  -0.907 N3    U5R 3  
U5R C4    C2  C 0 1 N N N 3.803 -19.949 -6.755  -5.088 0.835  -0.415 C4    U5R 4  
U5R O4    O2  O 0 1 N N N 2.646 -20.344 -6.617  -6.145 1.326  -0.769 O4    U5R 5  
U5R C5    C3  C 0 1 N N N 4.053 -18.667 -7.222  -5.072 -0.230 0.518  C5    U5R 6  
U5R C6    C4  C 0 1 N N N 5.367 -18.241 -7.370  -3.887 -0.756 0.894  C6    U5R 7  
U5R N1    N2  N 0 1 N N N 6.439 -19.093 -7.061  -2.727 -0.258 0.367  N1    U5R 8  
U5R "C1'" C5  C 0 1 N N R 7.838 -18.615 -7.214  -1.440 -0.829 0.775  "C1'" U5R 9  
U5R "O4'" O3  O 0 1 N N N 7.710 -17.171 -7.294  -0.543 0.215  1.213  "O4'" U5R 10 
U5R "C2'" C6  C 0 1 N N R 8.549 -19.019 -8.510  -0.733 -1.479 -0.435 "C2'" U5R 11 
U5R "F2'" F1  F 0 1 N N N 9.831 -18.799 -8.349  -0.943 -2.862 -0.440 "F2'" U5R 12 
U5R "C3'" C7  C 0 1 N N R 8.109 -17.915 -9.427  0.762  -1.159 -0.212 "C3'" U5R 13 
U5R "O3'" O4  O 0 1 N N N 8.985 -17.859 -10.576 1.516  -2.365 -0.072 "O3'" U5R 14 
U5R "C4'" C8  C 0 1 N N S 8.405 -16.763 -8.481  0.781  -0.353 1.109  "C4'" U5R 15 
U5R "C5'" C9  C 0 1 N N R 7.804 -15.423 -8.946  1.833  0.756  1.041  "C5'" U5R 16 
U5R C5M   C10 C 0 1 N N N 8.528 -14.880 -10.183 1.834  1.539  2.356  C5M   U5R 17 
U5R "O5'" O5  O 0 1 N N N 6.397 -15.592 -9.200  3.122  0.177  0.831  "O5'" U5R 18 
U5R P     P1  P 0 1 N N N 5.335 -14.387 -8.986  4.036  0.513  -0.451 P     U5R 19 
U5R OP1   O6  O 0 1 N N N 5.647 -13.313 -9.951  4.232  1.977  -0.547 OP1   U5R 20 
U5R OP2   O7  O 0 1 N N N 3.964 -14.940 -8.927  5.466  -0.211 -0.296 OP2   U5R 21 
U5R OP3   O8  O 0 1 N Y N 5.663 -13.830 -7.512  3.307  -0.020 -1.784 O1    U5R 22 
U5R H1    H1  H 0 1 N N N 4.710 -21.711 -6.107  -3.925 2.031  -1.546 H1    U5R 23 
U5R H2    H2  H 0 1 N N N 3.234 -18.007 -7.468  -5.996 -0.616 0.923  H2    U5R 24 
U5R H3    H3  H 0 1 N N N 5.566 -17.242 -7.727  -3.855 -1.569 1.604  H3    U5R 25 
U5R H4    H4  H 0 1 N N N 8.445 -18.911 -6.346  -1.586 -1.562 1.568  H4    U5R 26 
U5R H5    H5  H 0 1 N N N 8.256 -20.019 -8.862  -1.085 -1.037 -1.367 H5    U5R 27 
U5R H6    H6  H 0 1 N N N 7.042 -17.980 -9.688  1.151  -0.557 -1.033 H6    U5R 28 
U5R H7    H7  H 0 1 N N N 8.705 -17.160 -11.155 1.489  -2.938 -0.851 H7    U5R 29 
U5R H8    H8  H 0 1 N N N 9.488 -16.663 -8.313  0.977  -1.013 1.954  H8    U5R 30 
U5R H9    H9  H 0 1 N N N 7.937 -14.696 -8.132  1.598  1.429  0.217  H9    U5R 31 
U5R H10   H10 H 0 1 N N N 9.599 -14.762 -9.959  0.850  1.980  2.516  H10   U5R 32 
U5R H11   H11 H 0 1 N N N 8.404 -15.584 -11.019 2.068  0.865  3.180  H11   U5R 33 
U5R H12   H12 H 0 1 N N N 8.101 -13.905 -10.459 2.583  2.329  2.307  H12   U5R 34 
U5R H13   H13 H 0 1 N N N 3.417 -14.500 -9.567  6.070  -0.051 -1.034 H13   U5R 35 
U5R H14   H14 H 0 1 N Y N 5.984 -12.938 -7.574  3.147  -0.973 -1.790 H14   U5R 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U5R "O3'" "C3'" SING N N 1  
U5R C5M   "C5'" SING N N 2  
U5R OP1   P     DOUB N N 3  
U5R "C3'" "C2'" SING N N 4  
U5R "C3'" "C4'" SING N N 5  
U5R "O5'" P     SING N N 6  
U5R "O5'" "C5'" SING N N 7  
U5R P     OP2   SING N N 8  
U5R "C5'" "C4'" SING N N 9  
U5R "C2'" "F2'" SING N N 10 
U5R "C2'" "C1'" SING N N 11 
U5R "C4'" "O4'" SING N N 12 
U5R C6    C5    DOUB N N 13 
U5R C6    N1    SING N N 14 
U5R "O4'" "C1'" SING N N 15 
U5R C5    C4    SING N N 16 
U5R "C1'" N1    SING N N 17 
U5R N1    C2    SING N N 18 
U5R C4    O4    DOUB N N 19 
U5R C4    N3    SING N N 20 
U5R C2    N3    SING N N 21 
U5R C2    O2    DOUB N N 22 
U5R P     OP3   SING N N 23 
U5R N3    H1    SING N N 24 
U5R C5    H2    SING N N 25 
U5R C6    H3    SING N N 26 
U5R "C1'" H4    SING N N 27 
U5R "C2'" H5    SING N N 28 
U5R "C3'" H6    SING N N 29 
U5R "O3'" H7    SING N N 30 
U5R "C4'" H8    SING N N 31 
U5R "C5'" H9    SING N N 32 
U5R C5M   H10   SING N N 33 
U5R C5M   H11   SING N N 34 
U5R C5M   H12   SING N N 35 
U5R OP2   H13   SING N N 36 
U5R OP3   H14   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U5R SMILES           ACDLabs              12.01 "O=C1NC(=O)C=CN1C2OC(C(C2F)O)C(C)OP(O)(O)=O"                                                                                                            
U5R InChI            InChI                1.03  "InChI=1S/C10H14FN2O8P/c1-4(21-22(17,18)19)8-7(15)6(11)9(20-8)13-3-2-5(14)12-10(13)16/h2-4,6-9,15H,1H3,(H,12,14,16)(H2,17,18,19)/t4-,6-,7+,8-,9-/m1/s1" 
U5R InChIKey         InChI                1.03  AVNIYVQWHJOOLV-DDIGBBAMSA-N                                                                                                                             
U5R SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O[P](O)(O)=O)[C@H]1O[C@H]([C@H](F)[C@@H]1O)N2C=CC(=O)NC2=O"                                                                                    
U5R SMILES           CACTVS               3.385 "C[CH](O[P](O)(O)=O)[CH]1O[CH]([CH](F)[CH]1O)N2C=CC(=O)NC2=O"                                                                                           
U5R SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H]([C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)F)O)OP(=O)(O)O"                                                                                    
U5R SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C1C(C(C(O1)N2C=CC(=O)NC2=O)F)O)OP(=O)(O)O"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U5R "SYSTEMATIC NAME" ACDLabs              12.01 "1-(2,6-dideoxy-2-fluoro-5-O-phosphono-beta-D-allofuranosyl)pyrimidine-2,4(1H,3H)-dione"                                         
U5R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(1R)-1-[(2S,3R,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]ethyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U5R "Create component" 2015-09-01 RCSB 
U5R "Initial release"  2016-06-29 RCSB 
# 
