data_S7R
# 
_chem_comp.id                                    S7R 
_chem_comp.name                                  "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-4-[(4-chlorophenyl)amino]piperidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H24 Cl N5 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-14 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        453.988 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S7R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BYC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S7R C10  C1  C  0 1 Y N N 18.904 21.904 -5.097 -2.655 0.658  -1.860 C10  S7R 1  
S7R C11  C2  C  0 1 Y N N 18.224 22.735 -4.223 -1.432 0.798  -2.486 C11  S7R 2  
S7R C12  C3  C  0 1 Y N N 17.359 22.185 -3.298 -0.282 0.333  -1.878 C12  S7R 3  
S7R C13  C4  C  0 1 Y N N 17.167 20.814 -3.227 -0.350 -0.279 -0.632 C13  S7R 4  
S7R C15  C5  C  0 1 N N N 16.306 18.979 -1.615 1.799  -1.291 -0.766 C15  S7R 5  
S7R C17  C6  C  0 1 N N N 15.201 18.684 -0.575 3.018  -1.875 -0.100 C17  S7R 6  
S7R C18  C7  C  0 1 N N N 15.530 17.486 0.232  4.170  -1.941 -1.107 C18  S7R 7  
S7R C19  C8  C  0 1 N N N 14.366 17.012 1.107  5.386  -2.591 -0.443 C19  S7R 8  
S7R C21  C9  C  0 1 N N N 12.732 18.167 -0.388 3.961  -3.900 1.016  C21  S7R 9  
S7R C22  C10 C  0 1 N N N 13.885 18.597 -1.291 2.702  -3.289 0.396  C22  S7R 10 
S7R C24  C11 C  0 1 Y N N 16.204 20.490 1.071  3.628  0.334  0.845  C24  S7R 11 
S7R C25  C12 C  0 1 Y N N 17.480 19.931 1.132  4.073  1.119  1.902  C25  S7R 12 
S7R C26  C13 C  0 1 Y N N 18.475 20.548 1.877  4.296  2.468  1.711  C26  S7R 13 
S7R C29  C14 C  0 1 Y N N 16.908 22.276 2.496  3.634  2.259  -0.584 C29  S7R 14 
S7R C27  C15 C  0 1 Y N N 18.169 21.728 2.548  4.077  3.039  0.470  C27  S7R 15 
S7R C31  C16 C  0 1 Y N N 17.841 19.969 -4.090 -1.574 -0.424 0.004  C31  S7R 16 
S7R C02  C17 C  0 1 N N N 20.508 16.049 -6.974 -7.698 0.477  -0.066 C02  S7R 17 
S7R C04  C18 C  0 1 Y N N 20.281 17.550 -6.847 -6.315 0.110  0.277  C04  S7R 18 
S7R C05  C19 C  0 1 Y N N 19.477 18.119 -5.818 -5.232 0.343  -0.496 C05  S7R 19 
S7R C06  C20 C  0 1 Y N N 19.452 19.625 -5.980 -4.045 -0.105 0.065  C06  S7R 20 
S7R C07  C21 C  0 1 Y N N 20.202 20.045 -7.113 -4.181 -0.689 1.272  C07  S7R 21 
S7R C09  C22 C  0 1 Y N N 18.690 20.539 -5.032 -2.732 0.046  -0.610 C09  S7R 22 
S7R C30  C23 C  0 1 Y N N 15.927 21.661 1.749  3.409  0.909  -0.400 C30  S7R 23 
S7R N01  N1  N  0 1 N N N 19.987 15.221 -5.907 -8.726 0.185  0.807  N01  S7R 24 
S7R N03  N2  N  0 1 N N N 21.077 15.540 -7.977 -7.952 1.078  -1.198 N03  S7R 25 
S7R N14  N3  N  0 1 N N N 16.227 20.306 -2.220 0.817  -0.750 -0.019 N14  S7R 26 
S7R N20  N4  N  0 1 N N N 13.061 16.944 0.382  5.032  -3.941 0.014  N20  S7R 27 
S7R N23  N5  N  0 1 N N N 15.085 19.900 0.315  3.407  -1.033 1.034  N23  S7R 28 
S7R O16  O1  O  0 1 N N N 17.153 18.183 -1.881 1.703  -1.308 -1.975 O16  S7R 29 
S7R S08  S1  S  0 1 Y N N 20.860 18.721 -7.816 -5.817 -0.692 1.760  S08  S7R 30 
S7R CL28 CL1 CL 0 0 N N N 19.425 22.568 3.496  4.359  4.735  0.234  CL28 S7R 31 
S7R H101 H1  H  0 0 N N N 19.592 22.316 -5.820 -3.551 1.028  -2.336 H101 S7R 32 
S7R H111 H2  H  0 0 N N N 18.369 23.804 -4.264 -1.375 1.273  -3.455 H111 S7R 33 
S7R H121 H3  H  0 0 N N N 16.824 22.833 -2.619 0.671  0.444  -2.372 H121 S7R 34 
S7R H181 H4  H  0 0 N N N 15.809 16.670 -0.451 3.866  -2.535 -1.969 H181 S7R 35 
S7R H182 H5  H  0 0 N N N 16.383 17.727 0.884  4.428  -0.933 -1.432 H182 S7R 36 
S7R H191 H6  H  0 0 N N N 14.604 16.008 1.489  6.203  -2.652 -1.161 H191 S7R 37 
S7R H192 H7  H  0 0 N N N 14.259 17.709 1.951  5.697  -1.989 0.411  H192 S7R 38 
S7R H212 H8  H  0 0 N N N 12.509 18.982 0.317  4.279  -3.292 1.863  H212 S7R 39 
S7R H211 H9  H  0 0 N N N 11.847 17.968 -1.011 3.743  -4.912 1.357  H211 S7R 40 
S7R H222 H10 H  0 0 N N N 13.650 19.587 -1.710 1.912  -3.244 1.145  H222 S7R 41 
S7R H221 H11 H  0 0 N N N 13.980 17.866 -2.108 2.375  -3.904 -0.443 H221 S7R 42 
S7R H251 H12 H  0 0 N N N 17.694 19.017 0.599  4.244  0.674  2.871  H251 S7R 43 
S7R H261 H13 H  0 0 N N N 19.466 20.122 1.935  4.641  3.079  2.532  H261 S7R 44 
S7R H291 H14 H  0 0 N N N 16.688 23.184 3.038  3.463  2.707  -1.552 H291 S7R 45 
S7R H311 H15 H  0 0 N N N 17.712 18.898 -4.034 -1.628 -0.899 0.972  H311 S7R 46 
S7R H051 H16 H  0 0 N N N 18.966 17.565 -5.045 -5.286 0.831  -1.458 H051 S7R 47 
S7R H071 H17 H  0 0 N N N 20.318 21.064 -7.452 -3.367 -1.094 1.854  H071 S7R 48 
S7R H301 H18 H  0 0 N N N 14.940 22.095 1.694  3.064  0.301  -1.223 H301 S7R 49 
S7R H012 H19 H  0 0 N N N 19.506 15.641 -5.137 -8.537 -0.261 1.648  H012 S7R 50 
S7R H031 H20 H  0 0 N N N 21.109 14.542 -7.923 -8.864 1.320  -1.424 H031 S7R 51 
S7R H141 H22 H  0 0 N N N 15.484 20.908 -1.929 0.918  -0.687 0.943  H141 S7R 52 
S7R H201 H23 H  0 0 N N N 12.336 16.791 1.054  5.842  -4.426 0.370  H201 S7R 53 
S7R H231 H25 H  0 0 N N N 14.742 20.632 -0.273 3.511  -1.424 1.915  H231 S7R 54 
S7R H011 H26 H  0 0 N N N 20.108 14.229 -5.940 -9.638 0.427  0.581  H011 S7R 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S7R N03 C02  DOUB N N 1  
S7R S08 C07  SING Y N 2  
S7R S08 C04  SING Y N 3  
S7R C07 C06  DOUB Y N 4  
S7R C02 C04  SING N N 5  
S7R C02 N01  SING N N 6  
S7R C04 C05  DOUB Y N 7  
S7R C06 C05  SING Y N 8  
S7R C06 C09  SING N N 9  
S7R C10 C09  DOUB Y N 10 
S7R C10 C11  SING Y N 11 
S7R C09 C31  SING Y N 12 
S7R C11 C12  DOUB Y N 13 
S7R C31 C13  DOUB Y N 14 
S7R C12 C13  SING Y N 15 
S7R C13 N14  SING N N 16 
S7R N14 C15  SING N N 17 
S7R O16 C15  DOUB N N 18 
S7R C15 C17  SING N N 19 
S7R C22 C17  SING N N 20 
S7R C22 C21  SING N N 21 
S7R C17 C18  SING N N 22 
S7R C17 N23  SING N N 23 
S7R C21 N20  SING N N 24 
S7R C18 C19  SING N N 25 
S7R N23 C24  SING N N 26 
S7R N20 C19  SING N N 27 
S7R C24 C25  DOUB Y N 28 
S7R C24 C30  SING Y N 29 
S7R C25 C26  SING Y N 30 
S7R C30 C29  DOUB Y N 31 
S7R C26 C27  DOUB Y N 32 
S7R C29 C27  SING Y N 33 
S7R C27 CL28 SING N N 34 
S7R C10 H101 SING N N 35 
S7R C11 H111 SING N N 36 
S7R C12 H121 SING N N 37 
S7R C18 H181 SING N N 38 
S7R C18 H182 SING N N 39 
S7R C19 H191 SING N N 40 
S7R C19 H192 SING N N 41 
S7R C21 H212 SING N N 42 
S7R C21 H211 SING N N 43 
S7R C22 H222 SING N N 44 
S7R C22 H221 SING N N 45 
S7R C25 H251 SING N N 46 
S7R C26 H261 SING N N 47 
S7R C29 H291 SING N N 48 
S7R C31 H311 SING N N 49 
S7R C05 H051 SING N N 50 
S7R C07 H071 SING N N 51 
S7R C30 H301 SING N N 52 
S7R N01 H012 SING N N 53 
S7R N03 H031 SING N N 54 
S7R N14 H141 SING N N 55 
S7R N20 H201 SING N N 56 
S7R N23 H231 SING N N 57 
S7R N01 H011 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S7R InChI            InChI                1.06  "InChI=1S/C23H24ClN5OS/c24-17-4-6-18(7-5-17)29-23(8-10-27-11-9-23)22(30)28-19-3-1-2-15(12-19)16-13-20(21(25)26)31-14-16/h1-7,12-14,27,29H,8-11H2,(H3,25,26)(H,28,30)" 
S7R InChIKey         InChI                1.06  NWVQLOGJVFRATP-UHFFFAOYSA-N                                                                                                                                           
S7R SMILES_CANONICAL CACTVS               3.385 "NC(=N)c1scc(c1)c2cccc(NC(=O)C3(CCNCC3)Nc4ccc(Cl)cc4)c2"                                                                                                              
S7R SMILES           CACTVS               3.385 "NC(=N)c1scc(c1)c2cccc(NC(=O)C3(CCNCC3)Nc4ccc(Cl)cc4)c2"                                                                                                              
S7R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\c1cc(cs1)c2cccc(c2)NC(=O)C3(CCNCC3)Nc4ccc(cc4)Cl)/N"                                                                                                        
S7R SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)NC(=O)C2(CCNCC2)Nc3ccc(cc3)Cl)c4cc(sc4)C(=N)N"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           S7R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-4-[(4-chlorophenyl)amino]piperidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S7R "Create component"   2022-12-14 PDBE 
S7R "Modify coordinates" 2022-12-15 PDBE 
S7R "Initial release"    2023-08-02 RCSB 
# 
