data_R8R
# 
_chem_comp.id                                    R8R 
_chem_comp.name                                  "(5R)-7-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-7-azaspiro[3.5]nonane-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H19 F N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-22 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.378 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R8R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SRE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R8R C18 C1  C 0 1 N N N -41.562 -30.695 0.953  -5.369 0.012  -1.056 C18 R8R 1  
R8R N1  N1  N 0 1 N N N -45.356 -29.238 2.898  -0.641 -0.778 -0.494 N1  R8R 2  
R8R C16 C2  C 0 1 N N N -43.710 -30.243 1.118  -3.293 0.255  -0.744 C16 R8R 3  
R8R C17 C3  C 0 1 N N N -42.398 -29.745 1.809  -4.371 -0.586 -0.050 C17 R8R 4  
R8R C15 C4  C 0 1 N N N -44.512 -29.030 0.636  -2.615 -0.462 -1.911 C15 R8R 5  
R8R C14 C5  C 0 1 N N N -45.027 -28.272 1.851  -1.606 -1.473 -1.356 C14 R8R 6  
R8R C13 C6  C 0 1 Y N N -44.005 -29.151 6.185  1.125  -3.721 0.501  C13 R8R 7  
R8R O2  O1  O 0 1 N N N -43.388 -31.438 3.915  -3.484 2.696  1.402  O2  R8R 8  
R8R C12 C7  C 0 1 Y N N -46.236 -29.047 6.386  2.703  -2.046 0.404  C12 R8R 9  
R8R C11 C8  C 0 1 Y N N -48.521 -29.027 3.506  1.878  1.422  -0.525 C11 R8R 10 
R8R C10 C9  C 0 1 Y N N -49.896 -28.963 3.566  2.757  2.479  -0.607 C10 R8R 11 
R8R C9  C10 C 0 1 Y N N -50.520 -28.913 4.805  4.104  2.291  -0.325 C9  R8R 12 
R8R C8  C11 C 0 1 Y N N -49.825 -28.908 5.990  4.576  1.047  0.041  C8  R8R 13 
R8R C7  C12 C 0 1 Y N N -48.439 -28.968 5.934  3.702  -0.031 0.128  C7  R8R 14 
R8R C6  C13 C 0 1 Y N N -47.784 -29.034 4.692  2.341  0.161  -0.157 C6  R8R 15 
R8R C5  C14 C 0 1 Y N N -46.380 -29.082 4.993  1.694  -1.148 0.022  C5  R8R 16 
R8R C4  C15 C 0 1 Y N N -45.225 -29.102 4.236  0.385  -1.625 -0.115 C4  R8R 17 
R8R C3  C16 C 0 1 N N N -45.829 -30.502 2.350  -1.298 -0.189 0.679  C3  R8R 18 
R8R C19 C17 C 0 1 N N N -42.787 -30.962 0.071  -4.411 1.210  -1.178 C19 R8R 19 
R8R C2  C18 C 0 1 N N R -44.597 -31.256 1.863  -2.292 0.884  0.223  C2  R8R 20 
R8R C1  C19 C 0 1 N N N -43.905 -32.015 2.996  -3.024 1.435  1.419  C1  R8R 21 
R8R O1  O2  O 0 1 N N N -43.926 -33.220 2.918  -3.196 0.743  2.394  O1  R8R 22 
R8R F1  F1  F 0 1 N N N -51.883 -28.854 4.838  4.958  3.335  -0.409 F1  R8R 23 
R8R N2  N2  N 0 1 Y N N -47.481 -28.981 6.945  3.893  -1.362 0.462  N2  R8R 24 
R8R N3  N3  N 0 1 Y N N -45.049 -29.082 7.013  2.370  -3.316 0.632  N3  R8R 25 
R8R N4  N4  N 0 1 Y N N -44.035 -29.185 4.842  0.149  -2.910 0.139  N4  R8R 26 
R8R H16 H1  H 0 1 N N N -41.193 -31.580 1.492  -5.463 -0.567 -1.975 H16 R8R 27 
R8R H15 H2  H 0 1 N N N -40.726 -30.210 0.428  -6.334 0.266  -0.616 H15 R8R 28 
R8R H13 H3  H 0 1 N N N -42.353 -29.959 2.887  -4.560 -0.290 0.982  H13 R8R 29 
R8R H14 H4  H 0 1 N N N -42.180 -28.681 1.637  -4.228 -1.661 -0.164 H14 R8R 30 
R8R H11 H5  H 0 1 N N N -43.865 -28.373 0.037  -3.365 -0.984 -2.504 H11 R8R 31 
R8R H12 H6  H 0 1 N N N -45.361 -29.367 0.023  -2.096 0.266  -2.534 H12 R8R 32 
R8R H10 H7  H 0 1 N N N -44.251 -27.582 2.214  -1.078 -1.950 -2.181 H10 R8R 33 
R8R H9  H8  H 0 1 N N N -45.927 -27.701 1.578  -2.132 -2.230 -0.775 H9  R8R 34 
R8R H8  H9  H 0 1 N N N -43.028 -29.183 6.645  0.894  -4.758 0.694  H8  R8R 35 
R8R H19 H10 H 0 1 N N N -43.026 -32.071 4.523  -3.948 3.005  2.192  H19 R8R 36 
R8R H6  H11 H 0 1 N N N -48.018 -29.071 2.551  0.831  1.571  -0.745 H6  R8R 37 
R8R H5  H12 H 0 1 N N N -50.482 -28.952 2.659  2.398  3.457  -0.892 H5  R8R 38 
R8R H4  H13 H 0 1 N N N -50.342 -28.859 6.937  5.625  0.910  0.259  H4  R8R 39 
R8R H3  H14 H 0 1 N N N -46.517 -30.318 1.512  -1.829 -0.966 1.227  H3  R8R 40 
R8R H2  H15 H 0 1 N N N -46.346 -31.083 3.128  -0.547 0.264  1.327  H2  R8R 41 
R8R H18 H16 H 0 1 N N N -42.750 -30.464 -0.909 -4.300 1.579  -2.197 H18 R8R 42 
R8R H17 H17 H 0 1 N N N -43.015 -32.029 -0.068 -4.611 2.004  -0.458 H17 R8R 43 
R8R H1  H18 H 0 1 N N N -44.934 -32.000 1.126  -1.755 1.688  -0.280 H1  R8R 44 
R8R H7  H19 H 0 1 N N N -47.674 -28.947 7.926  4.746  -1.755 0.704  H7  R8R 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R8R C19 C18 SING N N 1  
R8R C19 C16 SING N N 2  
R8R C15 C16 SING N N 3  
R8R C15 C14 SING N N 4  
R8R C18 C17 SING N N 5  
R8R C16 C17 SING N N 6  
R8R C16 C2  SING N N 7  
R8R C14 N1  SING N N 8  
R8R C2  C3  SING N N 9  
R8R C2  C1  SING N N 10 
R8R C3  N1  SING N N 11 
R8R N1  C4  SING N N 12 
R8R O1  C1  DOUB N N 13 
R8R C1  O2  SING N N 14 
R8R C11 C10 DOUB Y N 15 
R8R C11 C6  SING Y N 16 
R8R C10 C9  SING Y N 17 
R8R C4  N4  DOUB Y N 18 
R8R C4  C5  SING Y N 19 
R8R C6  C5  SING Y N 20 
R8R C6  C7  DOUB Y N 21 
R8R C9  F1  SING N N 22 
R8R C9  C8  DOUB Y N 23 
R8R N4  C13 SING Y N 24 
R8R C5  C12 DOUB Y N 25 
R8R C7  C8  SING Y N 26 
R8R C7  N2  SING Y N 27 
R8R C13 N3  DOUB Y N 28 
R8R C12 N2  SING Y N 29 
R8R C12 N3  SING Y N 30 
R8R C18 H16 SING N N 31 
R8R C18 H15 SING N N 32 
R8R C17 H13 SING N N 33 
R8R C17 H14 SING N N 34 
R8R C15 H11 SING N N 35 
R8R C15 H12 SING N N 36 
R8R C14 H10 SING N N 37 
R8R C14 H9  SING N N 38 
R8R C13 H8  SING N N 39 
R8R O2  H19 SING N N 40 
R8R C11 H6  SING N N 41 
R8R C10 H5  SING N N 42 
R8R C8  H4  SING N N 43 
R8R C3  H3  SING N N 44 
R8R C3  H2  SING N N 45 
R8R C19 H18 SING N N 46 
R8R C19 H17 SING N N 47 
R8R C2  H1  SING N N 48 
R8R N2  H7  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R8R SMILES           ACDLabs              12.01 "O=C(O)C1CN(CCC21CCC2)c1ncnc2[NH]c3cc(F)ccc3c21"                                                                                                                     
R8R InChI            InChI                1.06  "InChI=1S/C19H19FN4O2/c20-11-2-3-12-14(8-11)23-16-15(12)17(22-10-21-16)24-7-6-19(4-1-5-19)13(9-24)18(25)26/h2-3,8,10,13H,1,4-7,9H2,(H,25,26)(H,21,22,23)/t13-/m1/s1" 
R8R InChIKey         InChI                1.06  BNVOKYLFRJDXFX-CYBMUJFWSA-N                                                                                                                                          
R8R SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@H]1CN(CCC12CCC2)c3ncnc4[nH]c5cc(F)ccc5c34"                                                                                                                 
R8R SMILES           CACTVS               3.385 "OC(=O)[CH]1CN(CCC12CCC2)c3ncnc4[nH]c5cc(F)ccc5c34"                                                                                                                  
R8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CCC5(CCC5)[C@H](C4)C(=O)O"                                                                                                             
R8R SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1F)[nH]c3c2c(ncn3)N4CCC5(CCC5)C(C4)C(=O)O"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R8R "SYSTEMATIC NAME" ACDLabs              12.01 "(5R)-7-(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)-7-azaspiro[3.5]nonane-5-carboxylic acid"          
R8R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(9~{R})-7-(7-fluoranyl-9~{H}-pyrimido[4,5-b]indol-4-yl)-7-azaspiro[3.5]nonane-9-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R8R "Create component" 2022-06-22 RCSB 
R8R "Initial release"  2022-07-06 RCSB 
# 
