data_R4R
# 
_chem_comp.id                                    R4R 
_chem_comp.name                                  "4-[4-(4-methylpiperazin-1-yl)phenyl]-1-(2-methylprop-2-enoyl)-1H-indole-3-carbaldehyde, bound form" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H27 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.490 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R4R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DC7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R4R C13 C1  C 0 1 Y N N N N N -11.279 -39.192 -0.187 -0.907 1.564  -0.140 C13 R4R 1  
R4R C15 C2  C 0 1 Y N N N N N -13.363 -39.645 1.243  1.022  0.566  -1.363 C15 R4R 2  
R4R C17 C3  C 0 1 Y N N N N N -15.599 -39.291 0.299  3.223  0.585  -0.411 C17 R4R 3  
R4R C20 C4  C 0 1 N N N N N N -19.390 -39.675 1.113  6.254  -1.479 -0.888 C20 R4R 4  
R4R C22 C5  C 0 1 N N N N N N -20.631 -37.881 0.472  6.568  -1.804 1.491  C22 R4R 5  
R4R C24 C6  C 0 1 N N N N N N -17.729 -39.318 -1.004 5.304  0.707  0.699  C24 R4R 6  
R4R C26 C7  C 0 1 Y N N N N N -13.634 -38.845 -1.039 1.398  1.553  0.808  C26 R4R 7  
R4R C28 C8  C 0 1 Y N N N N N -9.235  -40.514 -0.428 -2.658 3.211  -0.073 C28 R4R 8  
R4R O01 O1  O 0 1 N N N N N N -6.407  -37.587 -1.229 -5.955 0.611  0.248  O01 R4R 9  
R4R C02 C9  C 0 1 N N N N N N -7.200  -36.644 -1.181 -5.282 -0.393 0.237  C02 R4R 10 
R4R C03 C10 C 0 1 N N N N N N -6.577  -35.204 -1.439 -5.944 -1.744 0.332  C03 R4R 11 
R4R C04 C11 C 0 1 N N N N N N -5.113  -35.440 -1.731 -7.296 -1.601 1.033  C04 R4R 12 
R4R C05 C12 C 0 1 N N N N N N -7.255  -34.514 -2.696 -6.155 -2.308 -1.074 C05 R4R 13 
R4R N06 N1  N 0 1 Y N N N N N -8.613  -36.891 -0.904 -3.941 -0.305 0.141  N06 R4R 14 
R4R C07 C13 C 0 1 Y N N N N N -9.615  -35.935 -0.810 -3.091 -1.367 0.119  C07 R4R 15 
R4R C08 C14 C 0 1 Y N N N N N -10.819 -36.602 -0.539 -1.804 -0.923 0.013  C08 R4R 16 
R4R C09 C15 C 0 1 N N N N N N -12.137 -35.990 -0.370 -0.596 -1.745 -0.040 C09 R4R 17 
R4R O10 O2  O 0 1 N N N N N N -12.257 -34.866 -0.439 0.498  -1.220 -0.024 O10 R4R 18 
R4R C11 C16 C 0 1 Y N N N N N -9.105  -38.087 -0.696 -3.229 0.881  0.046  C11 R4R 19 
R4R C12 C17 C 0 1 Y N N N N N -10.517 -37.977 -0.467 -1.870 0.551  -0.036 C12 R4R 20 
R4R C14 C18 C 0 1 Y N N N N N -12.806 -39.218 0.060  0.532  1.221  -0.233 C14 R4R 21 
R4R C16 C19 C 0 1 Y N N N N N -14.798 -39.674 1.379  2.360  0.248  -1.448 C16 R4R 22 
R4R N18 N2  N 0 1 N N N N N N -17.088 -39.284 0.314  4.578  0.262  -0.499 N18 R4R 23 
R4R C19 C20 C 0 1 N N N N N N -17.900 -40.115 1.181  4.763  -1.179 -0.718 C19 R4R 24 
R4R N21 N3  N 0 1 N N N N N N -19.478 -38.502 0.362  6.980  -1.035 0.309  N21 R4R 25 
R4R C23 C21 C 0 1 N N N N N N -19.163 -38.727 -0.937 6.795  0.407  0.529  C23 R4R 26 
R4R C25 C22 C 0 1 Y N N N N N -15.010 -38.874 -0.902 2.738  1.243  0.714  C25 R4R 27 
R4R C27 C23 C 0 1 Y N N N N N -10.676 -40.400 -0.186 -1.314 2.894  -0.160 C27 R4R 28 
R4R C29 C24 C 0 1 Y N N N N N -8.503  -39.337 -0.678 -3.610 2.218  0.035  C29 R4R 29 
R4R H1  H1  H 0 1 N N N N N N -12.731 -39.956 2.062  0.352  0.304  -2.169 H1  R4R 30 
R4R H2  H2  H 0 1 N N N N N N -19.769 -39.493 2.130  6.396  -2.552 -1.023 H2  R4R 31 
R4R H3  H3  H 0 1 N N N N N N -19.988 -40.466 0.636  6.634  -0.950 -1.762 H3  R4R 32 
R4R H4  H4  H 0 1 N N N N N N -20.858 -37.713 1.535  6.778  -2.861 1.327  H4  R4R 33 
R4R H5  H5  H 0 1 N N N N N N -20.577 -36.913 -0.048 7.121  -1.454 2.363  H5  R4R 34 
R4R H6  H6  H 0 1 N N N N N N -21.423 -38.496 0.021  5.500  -1.668 1.659  H6  R4R 35 
R4R H7  H7  H 0 1 N N N N N N -17.785 -40.360 -1.351 5.162  1.779  0.833  H7  R4R 36 
R4R H8  H8  H 0 1 N N N N N N -17.129 -38.728 -1.712 4.924  0.178  1.572  H8  R4R 37 
R4R H9  H9  H 0 1 N N N N N N -13.189 -38.541 -1.975 1.022  2.064  1.682  H9  R4R 38 
R4R H10 H10 H 0 1 N N N N N N -8.746  -41.477 -0.415 -2.965 4.246  -0.089 H10 R4R 39 
R4R H11 H11 H 0 1 N N N N N N -6.706  -34.573 -0.547 -5.308 -2.420 0.903  H11 R4R 40 
R4R H12 H12 H 0 1 N N N N N N -4.638  -35.919 -0.862 -7.932 -0.924 0.462  H12 R4R 41 
R4R H13 H13 H 0 1 N N N N N N -5.015  -36.095 -2.609 -7.775 -2.578 1.101  H13 R4R 42 
R4R H14 H14 H 0 1 N N N N N N -4.620  -34.478 -1.935 -7.146 -1.199 2.035  H14 R4R 43 
R4R H15 H15 H 0 1 N N N N N N -8.321  -34.340 -2.489 -6.791 -1.631 -1.646 H15 R4R 44 
R4R H16 H16 H 0 1 N N N N N N -6.759  -33.553 -2.898 -5.191 -2.409 -1.574 H16 R4R 45 
R4R H17 H17 H 0 1 N N N N N N -7.155  -35.170 -3.573 -6.634 -3.285 -1.006 H17 R4R 46 
R4R H18 H18 H 0 1 N N N N N N -9.490  -34.868 -0.925 -3.389 -2.404 0.177  H18 R4R 47 
R4R H19 H19 H 0 1 N N N N N N -12.999 -36.612 -0.179 -0.678 -2.821 -0.094 H19 R4R 48 
R4R H20 H20 H 0 1 N N N N N N -15.251 -39.989 2.308  2.739  -0.264 -2.320 H20 R4R 49 
R4R H21 H21 H 0 1 N N N N N N -17.817 -41.164 0.860  4.226  -1.482 -1.617 H21 R4R 50 
R4R H22 H22 H 0 1 N N N N N N -17.540 -40.019 2.216  4.376  -1.730 0.139  H22 R4R 51 
R4R H24 H24 H 0 1 N N N N N N -19.200 -37.781 -1.497 7.182  0.958  -0.329 H24 R4R 52 
R4R H25 H25 H 0 1 N N N N N N -19.878 -39.440 -1.374 7.332  0.710  1.428  H25 R4R 53 
R4R H26 H26 H 0 1 N N N N N N -15.636 -38.572 -1.729 3.409  1.500  1.520  H26 R4R 54 
R4R H27 H27 H 0 1 N N N N N N -11.261 -41.290 -0.005 -0.579 3.681  -0.244 H27 R4R 55 
R4R H28 H28 H 0 1 N N N N N N -7.441  -39.410 -0.861 -4.655 2.480  0.111  H28 R4R 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R4R C05 C03 SING N N 1  
R4R C04 C03 SING N N 2  
R4R C03 C02 SING N N 3  
R4R O01 C02 DOUB N N 4  
R4R C02 N06 SING N N 5  
R4R C26 C25 DOUB Y N 6  
R4R C26 C14 SING Y N 7  
R4R C24 C23 SING N N 8  
R4R C24 N18 SING N N 9  
R4R C23 N21 SING N N 10 
R4R N06 C07 SING Y N 11 
R4R N06 C11 SING Y N 12 
R4R C25 C17 SING Y N 13 
R4R C07 C08 DOUB Y N 14 
R4R C11 C29 DOUB Y N 15 
R4R C11 C12 SING Y N 16 
R4R C29 C28 SING Y N 17 
R4R C08 C12 SING Y N 18 
R4R C08 C09 SING N N 19 
R4R C12 C13 DOUB Y N 20 
R4R O10 C09 DOUB N N 21 
R4R C28 C27 DOUB Y N 22 
R4R C13 C27 SING Y N 23 
R4R C13 C14 SING N N 24 
R4R C14 C15 DOUB Y N 25 
R4R C17 N18 SING N N 26 
R4R C17 C16 DOUB Y N 27 
R4R N18 C19 SING N N 28 
R4R N21 C22 SING N N 29 
R4R N21 C20 SING N N 30 
R4R C20 C19 SING N N 31 
R4R C15 C16 SING Y N 32 
R4R C15 H1  SING N N 33 
R4R C20 H2  SING N N 34 
R4R C20 H3  SING N N 35 
R4R C22 H4  SING N N 36 
R4R C22 H5  SING N N 37 
R4R C22 H6  SING N N 38 
R4R C24 H7  SING N N 39 
R4R C24 H8  SING N N 40 
R4R C26 H9  SING N N 41 
R4R C28 H10 SING N N 42 
R4R C03 H11 SING N N 43 
R4R C04 H12 SING N N 44 
R4R C04 H13 SING N N 45 
R4R C04 H14 SING N N 46 
R4R C05 H15 SING N N 47 
R4R C05 H16 SING N N 48 
R4R C05 H17 SING N N 49 
R4R C07 H18 SING N N 50 
R4R C09 H19 SING N N 51 
R4R C16 H20 SING N N 52 
R4R C19 H21 SING N N 53 
R4R C19 H22 SING N N 54 
R4R C23 H24 SING N N 55 
R4R C23 H25 SING N N 56 
R4R C25 H26 SING N N 57 
R4R C27 H27 SING N N 58 
R4R C29 H28 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R4R SMILES           ACDLabs              12.01 "CN1CCN(CC1)c1ccc(cc1)c1cccc2n(cc(C=O)c21)C(=O)C(C)C"                                                                                       
R4R InChI            InChI                1.03  "InChI=1S/C24H27N3O2/c1-17(2)24(29)27-15-19(16-28)23-21(5-4-6-22(23)27)18-7-9-20(10-8-18)26-13-11-25(3)12-14-26/h4-10,15-17H,11-14H2,1-3H3" 
R4R InChIKey         InChI                1.03  UKTLOAMGFGATOJ-UHFFFAOYSA-N                                                                                                                 
R4R SMILES_CANONICAL CACTVS               3.385 "CC(C)C(=O)n1cc(C=O)c2c1cccc2c3ccc(cc3)N4CCN(C)CC4"                                                                                         
R4R SMILES           CACTVS               3.385 "CC(C)C(=O)n1cc(C=O)c2c1cccc2c3ccc(cc3)N4CCN(C)CC4"                                                                                         
R4R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2c3ccc(cc3)N4CCN(CC4)C)C=O"                                                                                         
R4R SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(=O)n1cc(c2c1cccc2c3ccc(cc3)N4CCN(CC4)C)C=O"                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R4R "SYSTEMATIC NAME" ACDLabs              12.01 "4-[4-(4-methylpiperazin-1-yl)phenyl]-1-(2-methylpropanoyl)-1H-indole-3-carbaldehyde" 
R4R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[4-(4-methylpiperazin-1-yl)phenyl]-1-(2-methylpropanoyl)indole-3-carbaldehyde"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R4R "Create component" 2022-06-16 RCSB 
R4R "Modify name"      2022-06-16 RCSB 
R4R "Initial release"  2022-10-12 RCSB 
R4R "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R4R 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C04 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
