data_PJR
# 
_chem_comp.id                                    PJR 
_chem_comp.name                                  "[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H40 F2 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-05-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.652 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PJR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CZV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PJR C02 C1  C 0 1 N N N N N N -21.725 23.687 2.502  -1.427  -1.699 0.393  C02 PJR 1  
PJR C04 C2  C 0 1 N N S N N N -21.222 25.993 1.724  1.003   -1.653 0.571  C04 PJR 2  
PJR C05 C3  C 0 1 N N N N N N -21.481 26.965 0.541  1.370   -3.116 0.829  C05 PJR 3  
PJR C06 C4  C 0 1 N N N N N N -20.716 26.561 -0.745 2.638   -3.180 1.683  C06 PJR 4  
PJR C07 C5  C 0 1 N N N N N N -19.190 26.491 -0.521 2.351   -2.597 3.068  C07 PJR 5  
PJR C08 C6  C 0 1 N N N N N N -20.969 27.537 -1.896 3.084   -4.637 1.825  C08 PJR 6  
PJR C09 C7  C 0 1 N N N N N N -21.741 26.636 3.053  2.119   -0.981 -0.187 C09 PJR 7  
PJR C11 C8  C 0 1 N N S N N N -21.241 27.798 5.193  4.223   0.246  -0.245 C11 PJR 8  
PJR C12 C9  C 0 1 N N N N N N -20.583 27.032 6.399  4.838   1.291  0.688  C12 PJR 9  
PJR C13 C10 C 0 1 N N S N N N -21.034 25.540 6.449  3.761   2.292  1.112  C13 PJR 10 
PJR C14 C11 C 0 1 N N N N N N -20.393 24.756 7.622  4.351   3.353  2.016  C14 PJR 11 
PJR C16 C12 C 0 1 N N N N N N -22.716 24.173 7.629  3.011   4.484  0.493  C16 PJR 12 
PJR C17 C13 C 0 1 N N N N N N -22.553 25.434 6.754  3.243   3.082  -0.112 C17 PJR 13 
PJR C19 C14 C 0 1 N N S N N N -20.781 29.275 5.186  5.313   -0.714 -0.725 C19 PJR 14 
PJR C23 C15 C 0 1 N N N N N N -22.569 21.678 3.408  -3.813  -1.661 0.409  C23 PJR 15 
PJR C24 C16 C 0 1 N N S N N N -22.252 20.239 3.023  -4.982  -1.446 -0.554 C24 PJR 16 
PJR C25 C17 C 0 1 N N R N N N -23.434 19.339 2.652  -6.392  -1.421 0.041  C25 PJR 17 
PJR C26 C18 C 0 1 N N N N N N -23.493 18.388 1.470  -7.410  -0.474 -0.596 C26 PJR 18 
PJR C27 C19 C 0 1 N N N N N N -22.995 16.962 1.589  -6.902  0.966  -0.493 C27 PJR 19 
PJR C28 C20 C 0 1 N N N N N N -23.615 16.106 0.520  -7.921  1.913  -1.130 C28 PJR 20 
PJR C29 C21 C 0 1 N N N N N N -23.176 16.627 -0.873 -9.259  1.791  -0.397 C29 PJR 21 
PJR C30 C22 C 0 1 N N N N N N -23.379 18.176 -1.037 -9.767  0.351  -0.501 C30 PJR 22 
PJR C31 C23 C 0 1 N N N N N N -22.855 18.942 0.180  -8.748  -0.596 0.136  C31 PJR 23 
PJR C34 C24 C 0 1 N N N N N N -22.696 19.114 3.931  -5.932  -2.623 -0.786 C34 PJR 24 
PJR F32 F1  F 0 1 N N N N N N -21.890 16.295 -1.085 -9.086  2.128  0.949  F32 PJR 25 
PJR F33 F2  F 0 1 N N N N N N -23.833 15.947 -1.849 -10.190 2.657  -0.980 F33 PJR 26 
PJR N03 N1  N 0 1 N N N N N N -21.863 24.685 1.548  -0.230  -1.591 -0.218 N03 PJR 27 
PJR N10 N2  N 0 1 N N N N N N -20.842 27.189 3.941  3.192   -0.506 0.475  N10 PJR 28 
PJR N15 N3  N 0 1 N N N N N N -21.396 24.000 8.251  3.919   4.570  1.643  N15 PJR 29 
PJR O01 O1  O 0 1 N N N N N N -20.953 23.754 3.449  -1.482  -1.939 1.583  O01 PJR 30 
PJR O18 O2  O 0 1 N N N N N N -19.235 24.747 7.970  5.104   3.136  2.941  O18 PJR 31 
PJR O20 O3  O 0 1 N N N N N N -21.238 29.887 6.353  4.722   -1.756 -1.503 O20 PJR 32 
PJR O21 O4  O 0 1 N N N N N N -22.930 26.651 3.328  2.051   -0.868 -1.393 O21 PJR 33 
PJR O22 O5  O 0 1 N N N N N N -22.516 22.583 2.328  -2.560  -1.537 -0.315 O22 PJR 34 
PJR S1  S1  S 1 1 N Y N N N N -19.017 29.298 5.119  6.513   0.192  -1.740 S1  PJR 35 
PJR H1  H1  H 0 1 N N N N N N -20.135 25.852 1.818  0.852   -1.143 1.523  H1  PJR 36 
PJR H2  H2  H 0 1 N N N N N N -21.160 27.974 0.838  0.553   -3.608 1.355  H2  PJR 37 
PJR H3  H3  H 0 1 N N N N N N -22.559 26.972 0.321  1.547   -3.619 -0.122 H3  PJR 38 
PJR H4  H4  H 0 1 N N N N N N -21.065 25.564 -1.052 3.429   -2.603 1.203  H4  PJR 39 
PJR H5  H5  H 0 1 N N N N N N -18.971 25.796 0.303  1.608   -3.213 3.574  H5  PJR 40 
PJR H6  H6  H 0 1 N N N N N N -18.701 26.136 -1.440 3.270   -2.582 3.654  H6  PJR 41 
PJR H7  H7  H 0 1 N N N N N N -18.811 27.492 -0.266 1.970   -1.581 2.963  H7  PJR 42 
PJR H8  H8  H 0 1 N N N N N N -22.050 27.611 -2.083 2.293   -5.213 2.305  H8  PJR 43 
PJR H9  H9  H 0 1 N N N N N N -20.574 28.528 -1.629 3.289   -5.052 0.838  H9  PJR 44 
PJR H10 H10 H 0 1 N N N N N N -20.464 27.173 -2.803 3.987   -4.683 2.433  H10 PJR 45 
PJR H11 H11 H 0 1 N N N N N N -22.335 27.763 5.306  3.775   0.745  -1.105 H11 PJR 46 
PJR H12 H12 H 0 1 N N N N N N -19.489 27.070 6.292  5.243   0.797  1.571  H12 PJR 47 
PJR H13 H13 H 0 1 N N N N N N -20.877 27.525 7.337  5.638   1.817  0.167  H13 PJR 48 
PJR H14 H14 H 0 1 N N N N N N -20.805 25.046 5.493  2.939   1.778  1.611  H14 PJR 49 
PJR H15 H15 H 0 1 N N N N N N -23.492 24.325 8.394  3.254   5.255  -0.238 H15 PJR 50 
PJR H16 H16 H 0 1 N N N N N N -22.975 23.300 7.012  1.976   4.588  0.821  H16 PJR 51 
PJR H17 H17 H 0 1 N N N N N N -22.898 26.326 7.298  3.995   3.117  -0.900 H17 PJR 52 
PJR H18 H18 H 0 1 N N N N N N -23.125 25.330 5.820  2.310   2.658  -0.483 H18 PJR 53 
PJR H19 H19 H 0 1 N N N N N N -21.151 29.778 4.280  5.821   -1.147 0.137  H19 PJR 54 
PJR H20 H20 H 0 1 N N N N N N -21.842 22.002 4.167  -3.851  -0.913 1.200  H20 PJR 55 
PJR H21 H21 H 0 1 N N N N N N -23.582 21.707 3.835  -3.882  -2.657 0.847  H21 PJR 56 
PJR H22 H22 H 0 1 N N N N N N -21.322 20.078 2.458  -4.780  -0.788 -1.399 H22 PJR 57 
PJR H23 H23 H 0 1 N N N N N N -24.395 19.848 2.813  -6.486  -1.558 1.118  H23 PJR 58 
PJR H24 H24 H 0 1 N N N N N N -24.563 18.296 1.234  -7.545  -0.737 -1.645 H24 PJR 59 
PJR H25 H25 H 0 1 N N N N N N -23.267 16.563 2.577  -6.767  1.229  0.556  H25 PJR 60 
PJR H26 H26 H 0 1 N N N N N N -21.901 16.948 1.477  -5.949  1.053  -1.014 H26 PJR 61 
PJR H27 H27 H 0 1 N N N N N N -24.711 16.153 0.601  -7.559  2.939  -1.056 H27 PJR 62 
PJR H28 H28 H 0 1 N N N N N N -23.283 15.065 0.644  -8.056  1.650  -2.179 H28 PJR 63 
PJR H29 H29 H 0 1 N N N N N N -22.838 18.515 -1.933 -10.720 0.264  0.021  H29 PJR 64 
PJR H30 H30 H 0 1 N N N N N N -24.452 18.385 -1.156 -9.901  0.088  -1.550 H30 PJR 65 
PJR H31 H31 H 0 1 N N N N N N -21.762 18.830 0.237  -9.110  -1.622 0.063  H31 PJR 66 
PJR H32 H32 H 0 1 N N N N N N -23.110 20.007 0.077  -8.613  -0.333 1.185  H32 PJR 67 
PJR H33 H33 H 0 1 N N N N N N -23.182 19.345 4.890  -6.355  -2.739 -1.784 H33 PJR 68 
PJR H34 H34 H 0 1 N N N N N N -22.062 18.222 4.047  -5.723  -3.551 -0.253 H34 PJR 69 
PJR H35 H35 H 0 1 N N N N N N -22.408 24.510 0.728  -0.185  -1.472 -1.179 H35 PJR 70 
PJR H36 H36 H 0 1 N N N N N N -19.869 27.168 3.710  3.283   -0.661 1.428  H36 PJR 71 
PJR H37 H37 H 0 1 N N N N N N -21.229 23.407 9.039  4.174   5.398  2.078  H37 PJR 72 
PJR H38 H38 H 0 1 N N N N N N -22.188 29.865 6.372  4.069   -2.283 -1.022 H38 PJR 73 
PJR O1  O6  O 0 1 N Y N N N N -18.796 31.028 5.500  7.303   1.123  -0.832 O1  PJR 74 
PJR O2  O7  O 0 1 N Y N N N N ?       ?      ?      7.471   -0.814 -2.361 O2  PJR 75 
PJR O3  O8  O 0 1 N Y N N N N ?       ?      ?      5.940   0.967  -2.785 O3  PJR 76 
PJR H39 H39 H 0 1 N Y N N N N -17.869 31.235 5.509  7.971   1.649  -1.293 H39 PJR 77 
PJR H40 H40 H 0 1 N Y N N N N ?       ?      ?      7.910   -1.388 -1.718 H40 PJR 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PJR C08 C06 SING N N 1  
PJR F33 C29 SING N N 2  
PJR F32 C29 SING N N 3  
PJR C30 C29 SING N N 4  
PJR C30 C31 SING N N 5  
PJR C29 C28 SING N N 6  
PJR C06 C07 SING N N 7  
PJR C06 C05 SING N N 8  
PJR C31 C26 SING N N 9  
PJR C28 C27 SING N N 10 
PJR C05 C04 SING N N 11 
PJR C26 C27 SING N N 12 
PJR C26 C25 SING N N 13 
PJR N03 C04 SING N N 14 
PJR N03 C02 SING N N 15 
PJR C04 C09 SING N N 16 
PJR O22 C02 SING N N 17 
PJR O22 C23 SING N N 18 
PJR C02 O01 DOUB N N 19 
PJR C25 C24 SING N N 20 
PJR C25 C34 SING N N 21 
PJR C24 C23 SING N N 22 
PJR C24 C34 SING N N 23 
PJR C09 O21 DOUB N N 24 
PJR C09 N10 SING N N 25 
PJR N10 C11 SING N N 26 
PJR S1  C19 SING N N 27 
PJR C19 C11 SING N N 28 
PJR C19 O20 SING N N 29 
PJR C11 C12 SING N N 30 
PJR C12 C13 SING N N 31 
PJR C13 C17 SING N N 32 
PJR C13 C14 SING N N 33 
PJR C17 C16 SING N N 34 
PJR C14 O18 DOUB N N 35 
PJR C14 N15 SING N N 36 
PJR C16 N15 SING N N 37 
PJR C04 H1  SING N N 38 
PJR C05 H2  SING N N 39 
PJR C05 H3  SING N N 40 
PJR C06 H4  SING N N 41 
PJR C07 H5  SING N N 42 
PJR C07 H6  SING N N 43 
PJR C07 H7  SING N N 44 
PJR C08 H8  SING N N 45 
PJR C08 H9  SING N N 46 
PJR C08 H10 SING N N 47 
PJR C11 H11 SING N N 48 
PJR C12 H12 SING N N 49 
PJR C12 H13 SING N N 50 
PJR C13 H14 SING N N 51 
PJR C16 H15 SING N N 52 
PJR C16 H16 SING N N 53 
PJR C17 H17 SING N N 54 
PJR C17 H18 SING N N 55 
PJR C19 H19 SING N N 56 
PJR C23 H20 SING N N 57 
PJR C23 H21 SING N N 58 
PJR C24 H22 SING N N 59 
PJR C25 H23 SING N N 60 
PJR C26 H24 SING N N 61 
PJR C27 H25 SING N N 62 
PJR C27 H26 SING N N 63 
PJR C28 H27 SING N N 64 
PJR C28 H28 SING N N 65 
PJR C30 H29 SING N N 66 
PJR C30 H30 SING N N 67 
PJR C31 H31 SING N N 68 
PJR C31 H32 SING N N 69 
PJR C34 H33 SING N N 70 
PJR C34 H34 SING N N 71 
PJR N03 H35 SING N N 72 
PJR N10 H36 SING N N 73 
PJR N15 H37 SING N N 74 
PJR O20 H38 SING N N 75 
PJR S1  O1  SING N N 76 
PJR S1  O2  SING N N 77 
PJR S1  O3  DOUB N N 78 
PJR O1  H39 SING N N 79 
PJR O2  H40 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PJR InChI            InChI                1.03  "InChI=1S/C24H38F2N3O8S/c1-13(2)9-18(21(31)28-19(22(32)38(34,35)36)11-15-5-8-27-20(15)30)29-23(33)37-12-16-10-17(16)14-3-6-24(25,26)7-4-14/h13-19,22,32H,3-12H2,1-2H3,(H3-2,27,28,29,30,31,33,34,35,36)/q-1/p+2/t15-,16+,17+,18-,19-,22-/m0/s1" 
PJR InChIKey         InChI                1.03  ACNPODIUBZVYHB-WUOGMODZSA-P                                                                                                                                                                                                                     
PJR SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]1C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S+](O)(O)=O"                                                                                                                                           
PJR SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]1C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S+](O)(O)=O"                                                                                                                                                     
PJR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)[S+](=O)(O)O)NC(=O)OC[C@H]2C[C@@H]2C3CCC(CC3)(F)F"                                                                                                                                          
PJR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)[S+](=O)(O)O)NC(=O)OCC2CC2C3CCC(CC3)(F)F"                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           PJR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PJR "Create component" 2022-05-26 RCSB 
PJR "Initial release"  2022-06-22 RCSB 
PJR "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PJR 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
