data_M5R
# 
_chem_comp.id                                    M5R 
_chem_comp.name                                  "5-{(7R)-1-fluoro-3-hydroxy-7-[(3-methylbutyl)amino]-5,6,7,8-tetrahydronaphthalen-2-yl}-1lambda~6~,2,5-thiadiazolidine-1,1,3-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H24 F N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-14 
_chem_comp.pdbx_modified_date                    2023-07-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        385.454 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M5R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UAD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M5R N1  N1  N 0 1 N N N -21.256 -16.824 -10.683 -2.897 -0.288 -0.290 N1  M5R 1  
M5R C4  C1  C 0 1 N N N -23.458 -22.277 -15.640 4.901  -0.318 -0.098 C4  M5R 2  
M5R C5  C2  C 0 1 N N R -24.379 -19.960 -15.025 3.045  1.227  0.081  C5  M5R 3  
M5R C6  C3  C 0 1 N N N -24.581 -18.684 -15.835 2.753  2.663  0.530  C6  M5R 4  
M5R C7  C4  C 0 1 N N N -25.006 -17.547 -14.919 1.592  3.202  -0.304 C7  M5R 5  
M5R C8  C5  C 0 1 Y N N -24.044 -17.374 -13.770 0.432  2.241  -0.280 C8  M5R 6  
M5R C10 C6  C 0 1 Y N N -22.982 -15.884 -12.173 -1.922 1.898  -0.660 C10 M5R 7  
M5R C13 C7  C 0 1 N N N -19.134 -16.764 -9.599  -4.612 -1.887 -0.992 C13 M5R 8  
M5R C15 C8  C 0 1 Y N N -23.239 -18.436 -13.336 0.569  0.923  0.096  C15 M5R 9  
M5R F   F1  F 0 1 N N N -21.620 -19.206 -11.804 -0.403 -1.211 0.453  F   M5R 10 
M5R C14 C9  C 0 1 Y N N -22.342 -18.188 -12.310 -0.540 0.083  0.090  C14 M5R 11 
M5R C11 C10 C 0 1 Y N N -22.177 -16.936 -11.736 -1.784 0.564  -0.286 C11 M5R 12 
M5R S   S1  S 0 1 N N N -21.624 -16.907 -9.062  -3.964 -0.587 0.957  S   M5R 13 
M5R O2  O1  O 0 1 N N N -22.170 -18.195 -8.780  -4.690 0.613  1.185  O2  M5R 14 
M5R O3  O2  O 0 1 N N N -22.381 -15.764 -8.669  -3.244 -1.279 1.968  O3  M5R 15 
M5R N2  N2  N 0 1 N N N -20.065 -16.814 -8.588  -5.017 -1.676 0.268  N2  M5R 16 
M5R O1  O3  O 0 1 N N N -17.940 -16.592 -9.364  -5.189 -2.639 -1.748 O1  M5R 17 
M5R C12 C11 C 0 1 N N N -19.795 -16.830 -10.954 -3.395 -1.117 -1.395 C12 M5R 18 
M5R O   O4  O 0 1 N N N -22.900 -14.644 -11.617 -3.138 2.383  -1.028 O   M5R 19 
M5R C9  C12 C 0 1 Y N N -23.907 -16.118 -13.179 -0.815 2.727  -0.655 C9  M5R 20 
M5R C16 C13 C 0 1 N N N -23.233 -19.774 -14.040 1.888  0.337  0.529  C16 M5R 21 
M5R N   N3  N 0 1 N N N -24.106 -21.015 -16.026 4.295  0.760  0.695  N   M5R 22 
M5R C3  C14 C 0 1 N N N -24.438 -23.201 -14.937 6.198  -0.777 0.572  C3  M5R 23 
M5R C1  C15 C 0 1 N N N -23.764 -24.475 -14.471 6.829  -1.899 -0.254 C1  M5R 24 
M5R C2  C16 C 0 1 N N N -24.485 -25.106 -13.309 7.251  -1.352 -1.620 C2  M5R 25 
M5R C   C17 C 0 1 N N N -23.661 -25.456 -15.617 8.057  -2.443 0.479  C   M5R 26 
M5R H1  H1  H 0 1 N N N -23.077 -22.777 -16.543 4.208  -1.157 -0.161 H1  M5R 27 
M5R H2  H2  H 0 1 N N N -22.620 -22.058 -14.961 5.120  0.048  -1.101 H2  M5R 28 
M5R H3  H3  H 0 1 N N N -25.302 -20.193 -14.474 3.135  1.192  -1.005 H3  M5R 29 
M5R H4  H4  H 0 1 N N N -23.638 -18.416 -16.334 2.481  2.670  1.585  H4  M5R 30 
M5R H5  H5  H 0 1 N N N -25.361 -18.853 -16.592 3.636  3.283  0.374  H5  M5R 31 
M5R H6  H6  H 0 1 N N N -25.040 -16.614 -15.500 1.273  4.161  0.102  H6  M5R 32 
M5R H7  H7  H 0 1 N N N -26.006 -17.766 -14.518 1.923  3.340  -1.333 H7  M5R 33 
M5R H8  H8  H 0 1 N N N -19.803 -16.795 -7.623  -5.783 -2.085 0.700  H8  M5R 34 
M5R H9  H9  H 0 1 N N N -19.505 -17.752 -11.479 -3.636 -0.475 -2.242 H9  M5R 35 
M5R H10 H10 H 0 1 N N N -19.513 -15.958 -11.562 -2.617 -1.820 -1.693 H10 M5R 36 
M5R H11 H11 H 0 1 N N N -22.226 -14.641 -10.948 -3.656 2.742  -0.294 H11 M5R 37 
M5R H12 H12 H 0 1 N N N -24.537 -15.307 -13.513 -0.921 3.761  -0.945 H12 M5R 38 
M5R H13 H13 H 0 1 N N N -23.299 -20.566 -13.279 2.003  -0.653 0.088  H13 M5R 39 
M5R H14 H14 H 0 1 N N N -22.285 -19.872 -14.590 1.902  0.249  1.616  H14 M5R 40 
M5R H15 H15 H 0 1 N N N -23.525 -20.599 -16.725 4.141  0.465  1.648  H15 M5R 41 
M5R H17 H17 H 0 1 N N N -24.858 -22.679 -14.064 6.891  0.062  0.635  H17 M5R 42 
M5R H18 H18 H 0 1 N N N -25.248 -23.460 -15.634 5.979  -1.143 1.575  H18 M5R 43 
M5R H19 H19 H 0 1 N N N -22.744 -24.222 -14.145 6.104  -2.701 -0.392 H19 M5R 44 
M5R H20 H20 H 0 1 N N N -24.553 -24.383 -12.483 7.976  -0.551 -1.482 H20 M5R 45 
M5R H21 H21 H 0 1 N N N -25.497 -25.401 -13.622 7.701  -2.152 -2.208 H21 M5R 46 
M5R H22 H22 H 0 1 N N N -23.931 -25.995 -12.973 6.376  -0.965 -2.141 H22 M5R 47 
M5R H23 H23 H 0 1 N N N -23.171 -26.377 -15.269 7.757  -2.833 1.451  H23 M5R 48 
M5R H24 H24 H 0 1 N N N -24.669 -25.695 -15.987 8.507  -3.243 -0.110 H24 M5R 49 
M5R H25 H25 H 0 1 N N N -23.069 -25.010 -16.429 8.783  -1.641 0.617  H25 M5R 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M5R N   C4  SING N N 1  
M5R N   C5  SING N N 2  
M5R C6  C5  SING N N 3  
M5R C6  C7  SING N N 4  
M5R C4  C3  SING N N 5  
M5R C   C1  SING N N 6  
M5R C5  C16 SING N N 7  
M5R C3  C1  SING N N 8  
M5R C7  C8  SING N N 9  
M5R C1  C2  SING N N 10 
M5R C16 C15 SING N N 11 
M5R C8  C15 DOUB Y N 12 
M5R C8  C9  SING Y N 13 
M5R C15 C14 SING Y N 14 
M5R C9  C10 DOUB Y N 15 
M5R C14 F   SING N N 16 
M5R C14 C11 DOUB Y N 17 
M5R C10 C11 SING Y N 18 
M5R C10 O   SING N N 19 
M5R C11 N1  SING N N 20 
M5R C12 N1  SING N N 21 
M5R C12 C13 SING N N 22 
M5R N1  S   SING N N 23 
M5R C13 O1  DOUB N N 24 
M5R C13 N2  SING N N 25 
M5R S   O2  DOUB N N 26 
M5R S   O3  DOUB N N 27 
M5R S   N2  SING N N 28 
M5R C4  H1  SING N N 29 
M5R C4  H2  SING N N 30 
M5R C5  H3  SING N N 31 
M5R C6  H4  SING N N 32 
M5R C6  H5  SING N N 33 
M5R C7  H6  SING N N 34 
M5R C7  H7  SING N N 35 
M5R N2  H8  SING N N 36 
M5R C12 H9  SING N N 37 
M5R C12 H10 SING N N 38 
M5R O   H11 SING N N 39 
M5R C9  H12 SING N N 40 
M5R C16 H13 SING N N 41 
M5R C16 H14 SING N N 42 
M5R N   H15 SING N N 43 
M5R C3  H17 SING N N 44 
M5R C3  H18 SING N N 45 
M5R C1  H19 SING N N 46 
M5R C2  H20 SING N N 47 
M5R C2  H21 SING N N 48 
M5R C2  H22 SING N N 49 
M5R C   H23 SING N N 50 
M5R C   H24 SING N N 51 
M5R C   H25 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M5R SMILES           ACDLabs              12.01 "O=C1CN(c2c(F)c3CC(NCCC(C)C)CCc3cc2O)S(=O)(=O)N1"                                                                                                           
M5R InChI            InChI                1.03  "InChI=1S/C17H24FN3O4S/c1-10(2)5-6-19-12-4-3-11-7-14(22)17(16(18)13(11)8-12)21-9-15(23)20-26(21,24)25/h7,10,12,19,22H,3-6,8-9H2,1-2H3,(H,20,23)/t12-/m1/s1" 
M5R InChIKey         InChI                1.03  DVFCRTGTEXUFIN-GFCCVEGCSA-N                                                                                                                                 
M5R SMILES_CANONICAL CACTVS               3.385 "CC(C)CCN[C@@H]1CCc2cc(O)c(N3CC(=O)N[S]3(=O)=O)c(F)c2C1"                                                                                                    
M5R SMILES           CACTVS               3.385 "CC(C)CCN[CH]1CCc2cc(O)c(N3CC(=O)N[S]3(=O)=O)c(F)c2C1"                                                                                                      
M5R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CCN[C@@H]1CCc2cc(c(c(c2C1)F)N3CC(=O)NS3(=O)=O)O"                                                                                                      
M5R SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CCNC1CCc2cc(c(c(c2C1)F)N3CC(=O)NS3(=O)=O)O"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M5R "SYSTEMATIC NAME" ACDLabs              12.01 "5-{(7R)-1-fluoro-3-hydroxy-7-[(3-methylbutyl)amino]-5,6,7,8-tetrahydronaphthalen-2-yl}-1lambda~6~,2,5-thiadiazolidine-1,1,3-trione"            
M5R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(7~{R})-1-fluoranyl-7-(3-methylbutylamino)-3-oxidanyl-5,6,7,8-tetrahydronaphthalen-2-yl]-1,1-bis(oxidanylidene)-1,2,5-thiadiazolidin-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M5R "Create component" 2022-03-14 RCSB 
M5R "Initial release"  2023-07-26 RCSB 
# 
