data_M3R
#

_chem_comp.id                                   M3R
_chem_comp.name                                 "Methyl phosphonated L-Arginine"
_chem_comp.type                                 "L-peptide NH3 amino terminus"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C7 H17 N4 O4 P"
_chem_comp.mon_nstd_parent_comp_id              LYS
_chem_comp.pdbx_synonyms                        "(2S)-5-carbamimidamido-2-[(hydroxy-methyl-phosphoryl)amino]pentanoic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-03-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       252.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M3R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3GNH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M3R  CP    CP    C  0  1  N  N  N  27.051  115.011   9.427   2.933   2.671  -1.149  CP    M3R   1  
M3R  P     P     P  0  1  N  N  R  27.748  116.641   9.258   2.495   1.345   0.023  P     M3R   2  
M3R  OPA   OPA   O  0  1  N  N  N  28.128  117.154  10.706   1.719   1.977   1.284  OPA   M3R   3  
M3R  OPB   OPB   O  0  1  N  N  N  26.738  117.562   8.663   3.728   0.672   0.490  OPB   M3R   4  
M3R  N     N     N  0  1  N  N  N  29.137  116.580   8.426   1.500   0.225  -0.744  N     M3R   5  
M3R  CA    CA    C  0  1  N  N  S  29.839  117.771   7.855   1.126  -0.861   0.172  CA    M3R   6  
M3R  C     C     C  0  1  N  N  N  29.643  117.868   6.353   2.072  -2.020  -0.010  C     M3R   7  
M3R  OXT   OXT   O  0  1  N  Y  N  29.374  118.932   5.804   1.921  -3.132   0.728  OXT   M3R   8  
M3R  CB    CB    C  0  1  N  N  N  31.332  117.731   8.178  -0.303  -1.316  -0.132  CB    M3R   9  
M3R  CG    CG    C  0  1  N  N  N  31.972  119.090   8.361  -1.276  -0.176   0.173  CG    M3R  10  
M3R  CD    CD    C  0  1  N  N  N  33.328  118.603   7.935  -2.705  -0.631  -0.132  CD    M3R  11  
M3R  NE    NE    N  0  1  N  N  N  34.261  119.714   7.775  -3.638   0.461   0.160  NE    M3R  12  
M3R  CZ    CZ    C  0  1  N  N  N  34.959  120.773   8.164  -4.987   0.284  -0.038  CZ    M3R  13  
M3R  NH2   NH2   N  0  1  N  N  N  35.932  121.248   7.404  -5.436  -0.855  -0.486  NH2   M3R  14  
M3R  NH1   NH1   N  0  1  N  N  N  34.685  121.360   9.315  -5.862   1.309   0.235  NH1   M3R  15  
M3R  O     O     O  0  1  N  N  N  29.750  116.868   5.660   2.966  -1.949  -0.820  O     M3R  16  
M3R  HP    HP    H  0  1  N  N  N  26.907  114.568   8.430   3.577   3.396  -0.652  HP    M3R  17  
M3R  HPA   HPA   H  0  1  N  N  N  27.734  114.379  10.014   3.458   2.243  -2.002  HPA   M3R  18  
M3R  HPB   HPB   H  0  1  N  N  N  26.081  115.079   9.941   2.025   3.167  -1.492  HPB   M3R  19  
M3R  HOPA  HOPA  H  0  0  N  N  N  28.204  116.413  11.295   0.899   2.435   1.052  HOPA  M3R  20  
M3R  HN    HN    H  0  1  N  N  N  29.796  116.178   9.062   0.681   0.672  -1.128  HN    M3R  21  
M3R  HA    HA    H  0  1  N  N  N  29.394  118.663   8.321   1.183  -0.504   1.201  HA    M3R  22  
M3R  HXT   HXT   H  0  1  N  Y  N  29.288  118.793   4.868   2.552  -3.849   0.575  HXT   M3R  23  
M3R  HB2   HB2   H  0  1  N  N  N  31.459  117.170   9.116  -0.380  -1.589  -1.184  HB2   M3R  24  
M3R  HB3   HB3   H  0  1  N  N  N  31.829  117.262   7.316  -0.549  -2.179   0.487  HB3   M3R  25  
M3R  HG2   HG2   H  0  1  N  N  N  31.547  119.896   7.745  -1.198   0.097   1.225  HG2   M3R  26  
M3R  HG3   HG3   H  0  1  N  N  N  31.877  119.586   9.338  -1.030   0.687  -0.446  HG3   M3R  27  
M3R  HD2   HD2   H  0  1  N  N  N  33.718  117.918   8.702  -2.783  -0.904  -1.184  HD2   M3R  28  
M3R  HD3   HD3   H  0  1  N  N  N  33.227  118.090   6.967  -2.951  -1.494   0.487  HD3   M3R  29  
M3R  HE    HE    H  0  1  N  N  N  34.530  119.626   6.816  -3.303   1.309   0.493  HE    M3R  30  
M3R  HH21  HH21  H  0  0  N  N  N  36.361  122.044   7.831  -6.388  -0.979  -0.626  HH21  M3R  31  
M3R  HH12  HH12  H  0  0  N  N  N  33.931  120.897   9.780  -5.527   2.156   0.568  HH12  M3R  32  
M3R  HH11  HH11  H  0  0  N  N  N  35.167  122.160   9.673  -6.813   1.184   0.096  HH11  M3R  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M3R  P    CP    SING  N  N   1  
M3R  CP   HP    SING  N  N   2  
M3R  CP   HPA   SING  N  N   3  
M3R  CP   HPB   SING  N  N   4  
M3R  N    P     SING  N  N   5  
M3R  OPB  P     DOUB  N  N   6  
M3R  P    OPA   SING  N  N   7  
M3R  OPA  HOPA  SING  N  N   8  
M3R  CA   N     SING  N  N   9  
M3R  N    HN    SING  N  N  10  
M3R  C    CA    SING  N  N  11  
M3R  CA   CB    SING  N  N  12  
M3R  CA   HA    SING  N  N  13  
M3R  O    C     DOUB  N  N  14  
M3R  OXT  C     SING  N  N  15  
M3R  OXT  HXT   SING  N  N  16  
M3R  CB   CG    SING  N  N  17  
M3R  CB   HB2   SING  N  N  18  
M3R  CB   HB3   SING  N  N  19  
M3R  CD   CG    SING  N  N  20  
M3R  CG   HG2   SING  N  N  21  
M3R  CG   HG3   SING  N  N  22  
M3R  NE   CD    SING  N  N  23  
M3R  CD   HD2   SING  N  N  24  
M3R  CD   HD3   SING  N  N  25  
M3R  NE   CZ    SING  N  N  26  
M3R  NE   HE    SING  N  N  27  
M3R  NH2  CZ    DOUB  N  N  28  
M3R  CZ   NH1   SING  N  N  29  
M3R  NH2  HH21  SING  N  N  30  
M3R  NH1  HH12  SING  N  N  31  
M3R  NH1  HH11  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M3R  SMILES            ACDLabs               10.04  "O=P(O)(NC(C(=O)O)CCCNC(=[N@H])N)C"  
M3R  SMILES_CANONICAL  CACTVS                3.341  "C[P@](O)(=O)N[C@@H](CCCNC(N)=N)C(O)=O"  
M3R  SMILES            CACTVS                3.341  "C[P](O)(=O)N[CH](CCCNC(N)=N)C(O)=O"  
M3R  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(\N)/NCCC[C@@H](C(=O)O)N[P@@](=O)(C)O"  
M3R  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(N)NCCCC(C(=O)O)NP(=O)(C)O"  
M3R  InChI             InChI                 1.03   "InChI=1S/C7H17N4O4P/c1-16(14,15)11-5(6(12)13)3-2-4-10-7(8)9/h5H,2-4H2,1H3,(H,12,13)(H4,8,9,10)(H2,11,14,15)/t5-/m0/s1"  
M3R  InChIKey          InChI                 1.03   BJBJPERGZRNAQZ-YFKPBYRVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M3R  "SYSTEMATIC NAME"  ACDLabs               10.04  "N~2~-[(R)-hydroxy(methyl)phosphoryl]-L-arginine"  
M3R  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-5-carbamimidamido-2-[(hydroxy-methyl-phosphoryl)amino]pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M3R  "Create component"   2009-03-20  RCSB  
M3R  "Modify descriptor"  2011-06-04  RCSB  
M3R  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     M3R
_pdbx_chem_comp_synonyms.name        "(2S)-5-carbamimidamido-2-[(hydroxy-methyl-phosphoryl)amino]pentanoic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
