data_LIR
# 
_chem_comp.id                                    LIR 
_chem_comp.name                                  "2-[(3S)-3-AMINOPIPERIDIN-1-YL]-1-(2-CYANOBENZYL)-5-METHYL-4,6-DIOXO-3,4,5,6-TETRAHYDROPYRROLO[3,4-D]IMIDAZOL-1-IUM" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2006-08-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        365.409 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LIR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2I3Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LIR C4   C4   C 0 1 N N N 18.931 39.753 -78.219 -0.396 6.838  2.476  C4   LIR 1  
LIR C7   C7   C 0 1 Y N N 15.395 38.798 -78.602 -1.848 3.573  2.031  C7   LIR 2  
LIR N12  N12  N 0 1 N N N 14.061 38.314 -78.414 -1.999 2.260  1.608  N12  LIR 3  
LIR C13  C13  C 0 1 N N N 13.964 36.911 -78.817 -1.494 1.096  2.383  C13  LIR 4  
LIR C15  C15  C 0 1 N N N 12.048 36.567 -77.241 -1.217 -0.157 0.225  C15  LIR 5  
LIR C17  C17  C 0 1 N N N 13.532 38.586 -77.046 -2.670 1.916  0.331  C17  LIR 6  
LIR C20  C20  C 0 1 Y N N 15.400 39.230 -82.261 -3.749 3.159  4.662  C20  LIR 7  
LIR C21  C21  C 0 1 Y N N 15.298 40.220 -83.254 -2.950 3.837  5.576  C21  LIR 8  
LIR C22  C22  C 0 1 Y N N 15.760 39.978 -84.559 -2.724 3.287  6.837  C22  LIR 9  
LIR C24  C24  C 0 1 Y N N 16.487 37.742 -83.914 -4.100 1.388  6.256  C24  LIR 10 
LIR C26  C26  C 0 1 N N N 16.188 36.909 -81.667 -5.151 1.228  4.066  C26  LIR 11 
LIR C1   C1   C 0 1 N N N 18.279 40.422 -80.270 -2.501 6.734  3.625  C1   LIR 12 
LIR C2   C2   C 0 1 Y N N 17.155 39.762 -79.601 -2.199 5.518  2.982  C2   LIR 13 
LIR C3   C3   C 0 1 Y N N 17.529 39.378 -78.413 -1.007 5.577  2.332  C3   LIR 14 
LIR N5   N5   N 0 1 N N N 19.306 40.351 -79.379 -1.361 7.493  3.274  N5   LIR 15 
LIR N6   N6   N 1 1 Y N N 15.757 39.380 -79.760 -2.713 4.274  2.790  N6   LIR 16 
LIR N8   N8   N 0 1 Y N N 16.408 38.734 -77.710 -0.797 4.368  1.746  N8   LIR 17 
LIR O9   O9   O 0 1 N N N 18.293 40.899 -81.397 -3.455 7.090  4.301  O9   LIR 18 
LIR O10  O10  O 0 1 N N N 19.610 39.540 -77.235 0.662  7.286  2.056  O10  LIR 19 
LIR C11  C11  C 0 1 N N N 20.641 40.895 -79.624 -1.205 8.866  3.718  C11  LIR 20 
LIR C14  C14  C 0 1 N N S 12.558 36.370 -78.680 -0.532 0.271  1.529  C14  LIR 21 
LIR C16  C16  C 0 1 N N N 12.076 38.071 -76.913 -1.754 1.055  -0.537 C16  LIR 22 
LIR N18  N18  N 0 1 N N N 12.609 34.978 -79.123 -0.089 -0.907 2.270  N18  LIR 23 
LIR C19  C19  C 0 1 N N N 14.860 39.562 -80.899 -3.970 3.784  3.311  C19  LIR 24 
LIR C23  C23  C 0 1 Y N N 16.366 38.746 -84.881 -3.299 2.063  7.177  C23  LIR 25 
LIR C25  C25  C 0 1 Y N N 16.027 37.979 -82.608 -4.326 1.939  4.994  C25  LIR 26 
LIR N27  N27  N 0 1 N N N 16.401 36.121 -80.838 -5.820 0.652  3.314  N27  LIR 27 
LIR H131 1H13 H 0 0 N N N 14.632 36.316 -78.176 -2.363 0.509  2.704  H131 LIR 28 
LIR H132 2H13 H 0 0 N N N 14.250 36.843 -79.877 -0.992 1.472  3.282  H132 LIR 29 
LIR H151 1H15 H 0 0 N N N 11.020 36.186 -77.155 -2.048 -0.842 0.440  H151 LIR 30 
LIR H152 2H15 H 0 0 N N N 12.689 36.017 -76.536 -0.512 -0.703 -0.413 H152 LIR 31 
LIR H171 1H17 H 0 0 N N N 14.164 38.073 -76.307 -2.935 2.840  -0.194 H171 LIR 32 
LIR H172 2H17 H 0 0 N N N 13.543 39.672 -76.870 -3.596 1.382  0.572  H172 LIR 33 
LIR H21  H21  H 0 1 N N N 14.860 41.177 -83.011 -2.497 4.792  5.321  H21  LIR 34 
LIR H22  H22  H 0 1 N N N 15.651 40.738 -85.318 -2.100 3.812  7.555  H22  LIR 35 
LIR H24  H24  H 0 1 N N N 16.931 36.791 -84.170 -4.541 0.435  6.537  H24  LIR 36 
LIR HN8  HN8  H 0 1 N N N 16.398 38.342 -76.790 0.009  4.100  1.188  HN8  LIR 37 
LIR H111 1H11 H 0 0 N N N 20.789 41.032 -80.705 -2.032 9.145  4.375  H111 LIR 38 
LIR H112 2H11 H 0 0 N N N 20.741 41.865 -79.115 -1.195 9.543  2.859  H112 LIR 39 
LIR H113 3H11 H 0 0 N N N 21.398 40.197 -79.236 -0.266 8.982  4.266  H113 LIR 40 
LIR H14  H14  H 0 1 N N N 11.829 36.908 -79.304 0.346  0.880  1.285  H14  LIR 41 
LIR H161 1H16 H 0 0 N N N 11.425 38.615 -77.614 -0.906 1.664  -0.875 H161 LIR 42 
LIR H162 2H16 H 0 0 N N N 11.715 38.236 -75.887 -2.292 0.726  -1.433 H162 LIR 43 
LIR H181 1H18 H 0 0 N N N 12.621 34.946 -80.122 -0.498 -1.080 3.163  H181 LIR 44 
LIR H182 2H18 H 0 0 N N N 13.437 34.545 -78.766 0.735  -1.374 1.960  H182 LIR 45 
LIR H191 1H19 H 0 0 N N N 14.576 40.625 -80.917 -4.398 3.058  2.610  H191 LIR 46 
LIR H192 2H19 H 0 0 N N N 14.038 38.849 -80.734 -4.686 4.612  3.376  H192 LIR 47 
LIR H23  H23  H 0 1 N N N 16.739 38.576 -85.880 -3.123 1.635  8.160  H23  LIR 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LIR C4  N5   SING N N 1  
LIR C4  C3   SING N N 2  
LIR C4  O10  DOUB N N 3  
LIR C7  N6   DOUB Y N 4  
LIR C7  N12  SING N N 5  
LIR C7  N8   SING Y N 6  
LIR N12 C13  SING N N 7  
LIR N12 C17  SING N N 8  
LIR C13 C14  SING N N 9  
LIR C13 H131 SING N N 10 
LIR C13 H132 SING N N 11 
LIR C15 C14  SING N N 12 
LIR C15 C16  SING N N 13 
LIR C15 H151 SING N N 14 
LIR C15 H152 SING N N 15 
LIR C17 C16  SING N N 16 
LIR C17 H171 SING N N 17 
LIR C17 H172 SING N N 18 
LIR C20 C21  DOUB Y N 19 
LIR C20 C25  SING Y N 20 
LIR C20 C19  SING N N 21 
LIR C21 C22  SING Y N 22 
LIR C21 H21  SING N N 23 
LIR C22 C23  DOUB Y N 24 
LIR C22 H22  SING N N 25 
LIR C24 C23  SING Y N 26 
LIR C24 C25  DOUB Y N 27 
LIR C24 H24  SING N N 28 
LIR C26 C25  SING N N 29 
LIR C26 N27  TRIP N N 30 
LIR C1  O9   DOUB N N 31 
LIR C1  C2   SING N N 32 
LIR C1  N5   SING N N 33 
LIR C2  N6   SING Y N 34 
LIR C2  C3   DOUB Y N 35 
LIR C3  N8   SING Y N 36 
LIR N5  C11  SING N N 37 
LIR N6  C19  SING N N 38 
LIR N8  HN8  SING N N 39 
LIR C11 H111 SING N N 40 
LIR C11 H112 SING N N 41 
LIR C11 H113 SING N N 42 
LIR C14 N18  SING N N 43 
LIR C14 H14  SING N N 44 
LIR C16 H161 SING N N 45 
LIR C16 H162 SING N N 46 
LIR N18 H181 SING N N 47 
LIR N18 H182 SING N N 48 
LIR C19 H191 SING N N 49 
LIR C19 H192 SING N N 50 
LIR C23 H23  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LIR SMILES           ACDLabs              10.04 "N#Cc1ccccc1C[n+]2c(nc3c2C(=O)N(C3=O)C)N4CCCC(N)C4"                                                                                                         
LIR SMILES_CANONICAL CACTVS               3.341 "CN1C(=O)c2[nH]c(N3CCC[C@H](N)C3)[n+](Cc4ccccc4C#N)c2C1=O"                                                                                                  
LIR SMILES           CACTVS               3.341 "CN1C(=O)c2[nH]c(N3CCC[CH](N)C3)[n+](Cc4ccccc4C#N)c2C1=O"                                                                                                   
LIR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN1C(=O)c2c([n+](c([nH]2)N3CCC[C@@H](C3)N)Cc4ccccc4C#N)C1=O"                                                                                               
LIR SMILES           "OpenEye OEToolkits" 1.5.0 "CN1C(=O)c2c([n+](c([nH]2)N3CCCC(C3)N)Cc4ccccc4C#N)C1=O"                                                                                                    
LIR InChI            InChI                1.03  "InChI=1S/C19H20N6O2/c1-23-17(26)15-16(18(23)27)25(10-13-6-3-2-5-12(13)9-20)19(22-15)24-8-4-7-14(21)11-24/h2-3,5-6,14H,4,7-8,10-11,21H2,1H3/p+1/t14-/m0/s1" 
LIR InChIKey         InChI                1.03  WVRGIUWTFUXDGX-AWEZNQCLSA-O                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LIR "SYSTEMATIC NAME" ACDLabs              10.04 "2-[(3S)-3-aminopiperidin-1-yl]-1-(2-cyanobenzyl)-5-methyl-4,6-dioxo-3,4,5,6-tetrahydropyrrolo[3,4-d]imidazol-1-ium" 
LIR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[2-[(3S)-3-aminopiperidin-1-yl]-5-methyl-4,6-dioxo-3H-pyrrolo[3,4-d]imidazol-1-ium-1-yl]methyl]benzonitrile"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LIR "Create component"  2006-08-22 RCSB 
LIR "Modify descriptor" 2011-06-04 RCSB 
# 
