data_L2R
# 
_chem_comp.id                                    L2R 
_chem_comp.name                                  "(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 N8 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-14 
_chem_comp.pdbx_modified_date                    2023-04-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        452.533 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L2R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A4M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L2R CAB C1  C 0 1 Y N N 30.265 17.503 11.989 -3.686 -1.263 -0.516 CAB L2R 1  
L2R CAA C2  C 0 1 Y N N 31.475 17.979 12.516 -4.340 -2.446 -0.790 CAA L2R 2  
L2R CAC C3  C 0 1 Y N N 32.588 18.132 11.675 -5.687 -2.578 -0.503 CAC L2R 3  
L2R CAD C4  C 0 1 Y N N 32.502 17.828 10.307 -6.387 -1.525 0.060  CAD L2R 4  
L2R CAE C5  C 0 1 Y N N 31.286 17.355 9.793  -5.744 -0.336 0.337  CAE L2R 5  
L2R CAF C6  C 0 1 Y N N 30.163 17.198 10.621 -4.385 -0.199 0.056  CAF L2R 6  
L2R CAG C7  C 0 1 N N N 28.986 16.755 10.131 -3.689 1.073  0.351  CAG L2R 7  
L2R NAH N1  N 0 1 N N N 28.260 15.823 10.751 -4.089 1.980  1.198  NAH L2R 8  
L2R NAI N2  N 0 1 N N N 27.138 15.635 10.017 -3.156 3.026  1.185  NAI L2R 9  
L2R CAJ C8  C 0 1 N N N 27.216 16.437 8.961  -2.193 2.701  0.299  CAJ L2R 10 
L2R SAL S1  S 0 1 N N N 25.987 16.493 7.700  -0.817 3.642  -0.089 SAL L2R 11 
L2R NAK N3  N 0 1 N N N 28.338 17.172 9.017  -2.505 1.496  -0.219 NAK L2R 12 
L2R CAM C9  C 0 1 N N N 28.664 18.142 7.940  -1.726 0.766  -1.222 CAM L2R 13 
L2R CAN C10 C 0 1 N N N 29.658 17.461 7.005  -0.631 -0.045 -0.527 CAN L2R 14 
L2R CB  C11 C 0 1 N N N 29.418 17.921 5.569  0.170  -0.822 -1.573 CB  L2R 15 
L2R CA  C12 C 0 1 N N S 30.240 17.032 4.594  1.325  -1.556 -0.889 CA  L2R 16 
L2R C   C13 C 0 1 N N N 29.591 15.610 4.362  2.023  -2.440 -1.890 C   L2R 17 
L2R OXT O1  O 0 1 N N N 30.358 14.645 4.393  1.343  -3.415 -2.513 OXT L2R 18 
L2R O   O2  O 0 1 N N N 28.350 15.488 4.202  3.194  -2.270 -2.133 O   L2R 19 
L2R N   N4  N 0 1 N N N 30.540 17.781 3.335  2.279  -0.576 -0.353 N   L2R 20 
L2R CAW C14 C 0 1 N N N 29.513 17.663 2.260  3.329  -1.238 0.433  CAW L2R 21 
L2R CAX C15 C 0 1 Y N N 28.921 19.034 1.852  2.747  -1.734 1.732  CAX L2R 22 
L2R CBA C16 C 0 1 Y N N 27.687 19.496 2.149  2.289  -2.978 1.970  CBA L2R 23 
L2R NBB N5  N 0 1 Y N N 27.577 20.714 1.615  1.853  -2.998 3.267  NBB L2R 24 
L2R CAZ C17 C 0 1 Y N N 28.724 20.991 1.005  2.060  -1.765 3.777  CAZ L2R 25 
L2R NAY N6  N 0 1 Y N N 29.564 19.952 1.138  2.599  -1.015 2.855  NAY L2R 26 
L2R CAU C18 C 0 1 N N N 31.932 17.585 2.864  2.861  0.236  -1.430 CAU L2R 27 
L2R CAV C19 C 0 1 Y N N 32.173 16.108 2.462  3.494  1.471  -0.842 CAV L2R 28 
L2R CBD C20 C 0 1 Y N N 32.973 15.249 3.082  4.797  1.624  -0.539 CBD L2R 29 
L2R NBF N7  N 0 1 Y N N 32.869 14.085 2.425  4.940  2.888  -0.034 NBF L2R 30 
L2R CBE C21 C 0 1 Y N N 32.017 14.249 1.412  3.719  3.464  -0.046 CBE L2R 31 
L2R NBC N8  N 0 1 Y N N 31.575 15.503 1.459  2.860  2.612  -0.535 NBC L2R 32 
L2R H1  H1  H 0 1 N N N 29.410 17.371 12.636 -2.635 -1.161 -0.741 H1  L2R 33 
L2R H2  H2  H 0 1 N N N 31.550 18.227 13.565 -3.800 -3.272 -1.229 H2  L2R 34 
L2R H3  H3  H 0 1 N N N 33.522 18.488 12.085 -6.195 -3.506 -0.719 H3  L2R 35 
L2R H4  H4  H 0 1 N N N 33.358 17.956 9.661  -7.438 -1.634 0.281  H4  L2R 36 
L2R H5  H5  H 0 1 N N N 31.212 17.108 8.744  -6.291 0.485  0.776  H5  L2R 37 
L2R H6  H6  H 0 1 N N N 26.389 15.008 10.230 -3.196 3.837  1.717  H6  L2R 38 
L2R H7  H7  H 0 1 N N N 29.113 19.048 8.372  -2.384 0.092  -1.773 H7  L2R 39 
L2R H8  H8  H 0 1 N N N 27.752 18.413 7.388  -1.270 1.474  -1.914 H8  L2R 40 
L2R H9  H9  H 0 1 N N N 29.528 16.370 7.065  0.033  0.629  0.013  H9  L2R 41 
L2R H10 H10 H 0 1 N N N 30.682 17.725 7.306  -1.087 -0.744 0.175  H10 L2R 42 
L2R H11 H11 H 0 1 N N N 29.733 18.970 5.463  -0.480 -1.546 -2.064 H11 L2R 43 
L2R H12 H12 H 0 1 N N N 28.348 17.834 5.330  0.568  -0.129 -2.314 H12 L2R 44 
L2R H13 H13 H 0 1 N N N 31.204 16.845 5.090  0.936  -2.167 -0.074 H13 L2R 45 
L2R H14 H14 H 0 1 N N N 29.863 13.842 4.280  1.833  -3.956 -3.147 H14 L2R 46 
L2R H16 H16 H 0 1 N N N 28.697 17.020 2.621  3.728  -2.080 -0.131 H16 L2R 47 
L2R H17 H17 H 0 1 N N N 29.979 17.203 1.376  4.129  -0.528 0.641  H17 L2R 48 
L2R H18 H18 H 0 1 N N N 26.929 18.975 2.715  2.270  -3.801 1.271  H18 L2R 49 
L2R H19 H19 H 0 1 N N N 26.776 21.310 1.665  1.468  -3.756 3.733  H19 L2R 50 
L2R H20 H20 H 0 1 N N N 28.947 21.910 0.483  1.824  -1.452 4.784  H20 L2R 51 
L2R H22 H22 H 0 1 N N N 32.628 17.857 3.671  3.618  -0.346 -1.955 H22 L2R 52 
L2R H23 H23 H 0 1 N N N 32.112 18.230 1.992  2.077  0.527  -2.129 H23 L2R 53 
L2R H24 H24 H 0 1 N N N 33.588 15.449 3.947  5.579  0.891  -0.670 H24 L2R 54 
L2R H25 H25 H 0 1 N N N 33.348 13.238 2.655  5.765  3.295  0.275  H25 L2R 55 
L2R H26 H26 H 0 1 N N N 31.737 13.500 0.686  3.491  4.465  0.289  H26 L2R 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L2R CAZ NAY DOUB Y N 1  
L2R CAZ NBB SING Y N 2  
L2R NAY CAX SING Y N 3  
L2R CBE NBC DOUB Y N 4  
L2R CBE NBF SING Y N 5  
L2R NBC CAV SING Y N 6  
L2R NBB CBA SING Y N 7  
L2R CAX CBA DOUB Y N 8  
L2R CAX CAW SING N N 9  
L2R CAW N   SING N N 10 
L2R NBF CBD SING Y N 11 
L2R CAV CAU SING N N 12 
L2R CAV CBD DOUB Y N 13 
L2R CAU N   SING N N 14 
L2R N   CA  SING N N 15 
L2R O   C   DOUB N N 16 
L2R C   OXT SING N N 17 
L2R C   CA  SING N N 18 
L2R CA  CB  SING N N 19 
L2R CB  CAN SING N N 20 
L2R CAN CAM SING N N 21 
L2R SAL CAJ DOUB N N 22 
L2R CAM NAK SING N N 23 
L2R CAJ NAK SING N N 24 
L2R CAJ NAI SING N N 25 
L2R NAK CAG SING N N 26 
L2R CAE CAD DOUB Y N 27 
L2R CAE CAF SING Y N 28 
L2R NAI NAH SING N N 29 
L2R CAG CAF SING N N 30 
L2R CAG NAH DOUB N N 31 
L2R CAD CAC SING Y N 32 
L2R CAF CAB DOUB Y N 33 
L2R CAC CAA DOUB Y N 34 
L2R CAB CAA SING Y N 35 
L2R CAB H1  SING N N 36 
L2R CAA H2  SING N N 37 
L2R CAC H3  SING N N 38 
L2R CAD H4  SING N N 39 
L2R CAE H5  SING N N 40 
L2R NAI H6  SING N N 41 
L2R CAM H7  SING N N 42 
L2R CAM H8  SING N N 43 
L2R CAN H9  SING N N 44 
L2R CAN H10 SING N N 45 
L2R CB  H11 SING N N 46 
L2R CB  H12 SING N N 47 
L2R CA  H13 SING N N 48 
L2R OXT H14 SING N N 49 
L2R CAW H16 SING N N 50 
L2R CAW H17 SING N N 51 
L2R CBA H18 SING N N 52 
L2R NBB H19 SING N N 53 
L2R CAZ H20 SING N N 54 
L2R CAU H22 SING N N 55 
L2R CAU H23 SING N N 56 
L2R CBD H24 SING N N 57 
L2R NBF H25 SING N N 58 
L2R CBE H26 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L2R InChI            InChI                1.06  "InChI=1S/C21H24N8O2S/c30-20(31)18(28(11-16-9-22-13-24-16)12-17-10-23-14-25-17)7-4-8-29-19(26-27-21(29)32)15-5-2-1-3-6-15/h1-3,5-6,9-10,13-14,18H,4,7-8,11-12H2,(H,22,24)(H,23,25)(H,27,32)(H,30,31)/t18-/m0/s1" 
L2R InChIKey         InChI                1.06  YWCRDRKNQRFREX-SFHVURJKSA-N                                                                                                                                                                                      
L2R SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@H](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3c[nH]cn3)Cc4c[nH]cn4"                                                                                                                                                  
L2R SMILES           CACTVS               3.385 "OC(=O)[CH](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3c[nH]cn3)Cc4c[nH]cn4"                                                                                                                                                   
L2R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCC[C@@H](C(=O)O)N(Cc3c[nH]cn3)Cc4c[nH]cn4"                                                                                                                                               
L2R SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCCC(C(=O)O)N(Cc3c[nH]cn3)Cc4c[nH]cn4"                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           L2R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[bis(1~{H}-imidazol-4-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L2R "Create component"  2022-06-14 PDBE 
L2R "Modify descriptor" 2022-08-22 RCSB 
L2R "Initial release"   2023-04-26 RCSB 
# 
