data_K2R
#

_chem_comp.id                                   K2R
_chem_comp.name                                 "3-[3-[9-[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]phenyl]propanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H21 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-25
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.365
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K2R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7C6B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K2R  OZ1    O1   O  0  1  N  N  N  -5.624  -18.737  -10.290   -9.393  -0.243  -2.758  OZ1    K2R   1  
K2R  CZ     C1   C  0  1  N  N  N  -6.424  -19.002  -11.182   -8.976   0.034  -1.513  CZ     K2R   2  
K2R  OZ2    O2   O  0  1  N  N  N  -7.125  -20.154  -11.223   -9.738  -0.083  -0.581  OZ2    K2R   3  
K2R  CE     C2   C  0  1  N  N  N  -6.771  -18.104  -12.338   -7.560   0.489  -1.275  CE     K2R   4  
K2R  CD2    C3   C  0  1  N  N  N  -6.371  -16.703  -11.918   -7.346   0.734   0.220  CD2    K2R   5  
K2R  CG1    C4   C  0  1  Y  N  N  -6.699  -15.629  -12.880   -5.930   1.189   0.457  CG1    K2R   6  
K2R  CB1    C5   C  0  1  Y  N  N  -5.872  -15.502  -13.993   -4.939   0.259   0.698  CB1    K2R   7  
K2R  CD1    C6   C  0  1  Y  N  N  -7.773  -14.766  -12.651   -5.624   2.538   0.428  CD1    K2R   8  
K2R  CG2    C7   C  0  1  Y  N  N  -8.016  -13.770  -13.587   -4.326   2.963   0.645  CG2    K2R   9  
K2R  CB2    C8   C  0  1  Y  N  N  -7.174  -13.654  -14.698   -3.327   2.043   0.892  CB2    K2R  10  
K2R  CA     C9   C  0  1  Y  N  N  -6.043  -14.469  -14.919   -3.627   0.682   0.911  CA     K2R  11  
K2R  C6     C10  C  0  1  Y  N  N  -5.238  -14.324  -16.144   -2.560  -0.311   1.176  C6     K2R  12  
K2R  N1     N1   N  0  1  Y  N  N  -4.686  -15.467  -16.663   -2.819  -1.424   1.859  N1     K2R  13  
K2R  C2     C11  C  0  1  Y  N  N  -4.003  -15.436  -17.802   -1.874  -2.313   2.099  C2     K2R  14  
K2R  N3     N2   N  0  1  Y  N  N  -3.782  -14.392  -18.586   -0.633  -2.158   1.686  N3     K2R  15  
K2R  C4     C12  C  0  1  Y  N  N  -4.300  -13.289  -18.040   -0.279  -1.081   0.998  C4     K2R  16  
K2R  C5     C13  C  0  1  Y  N  N  -5.039  -13.152  -16.891   -1.250  -0.103   0.708  C5     K2R  17  
K2R  N7     N3   N  0  1  Y  N  N  -5.419  -11.835  -16.723   -0.633   0.876   0.007  N7     K2R  18  
K2R  C8     C14  C  0  1  Y  N  N  -4.923  -11.203  -17.770    0.623   0.572  -0.150  C8     K2R  19  
K2R  N9     N4   N  0  1  Y  N  N  -4.225  -12.048  -18.596    0.890  -0.628   0.439  N9     K2R  20  
K2R  "C1'"  C15  C  0  1  N  N  R  -3.562  -11.729  -19.835    2.187  -1.308   0.472  "C1'"  K2R  21  
K2R  "C2'"  C16  C  0  1  N  N  R  -4.448  -11.376  -21.030    2.318  -2.273  -0.727  "C2'"  K2R  22  
K2R  "O2'"  O3   O  0  1  N  N  N  -3.897  -11.774  -22.291    2.011  -3.611  -0.329  "O2'"  K2R  23  
K2R  "O4'"  O4   O  0  1  N  N  N  -2.608  -10.663  -19.627    3.259  -0.355   0.297  "O4'"  K2R  24  
K2R  "C4'"  C17  C  0  1  N  N  R  -2.812   -9.721  -20.677    4.392  -1.134  -0.146  "C4'"  K2R  25  
K2R  "C3'"  C18  C  0  1  N  N  S  -4.288   -9.886  -21.046    3.802  -2.156  -1.143  "C3'"  K2R  26  
K2R  "O3'"  O5   O  0  1  N  N  N  -4.452   -9.534  -22.418    4.459  -3.418  -1.013  "O3'"  K2R  27  
K2R  "C5'"  C19  C  0  1  N  N  N  -2.466   -8.361  -20.132    5.414  -0.236  -0.846  "C5'"  K2R  28  
K2R  "O5'"  O6   O  0  1  N  N  N  -1.048   -8.278  -19.930    5.978   0.672   0.101  "O5'"  K2R  29  
K2R  P      P1   P  0  1  N  N  N  -0.345   -7.065  -19.159    7.092   1.767  -0.289  P      K2R  30  
K2R  O3P    O7   O  0  1  N  N  N   1.129   -7.334  -19.174    7.400   2.698   0.988  O3P    K2R  31  
K2R  O2P    O8   O  0  1  N  N  N  -1.136   -6.848  -17.835    8.443   1.018  -0.745  O2P    K2R  32  
K2R  O1P    O9   O  0  1  N  N  N  -0.744   -5.808  -20.096    6.592   2.605  -1.402  O1P    K2R  33  
K2R  H1     H1   H  0  1  N  N  N  -5.593  -19.455   -9.669  -10.310  -0.531  -2.861  H1     K2R  34  
K2R  H2     H2   H  0  1  N  N  N  -7.851  -18.147  -12.544   -6.868  -0.281  -1.620  H2     K2R  35  
K2R  H3     H3   H  0  1  N  N  N  -6.214  -18.407  -13.237   -7.378   1.413  -1.824  H3     K2R  36  
K2R  H4     H4   H  0  1  N  N  N  -5.282  -16.695  -11.760   -8.038   1.503   0.564  H4     K2R  37  
K2R  H5     H5   H  0  1  N  N  N  -6.881  -16.475  -10.970   -7.528  -0.190   0.769  H5     K2R  38  
K2R  H6     H6   H  0  1  N  N  N  -5.079  -16.219  -14.145   -5.179  -0.794   0.721  H6     K2R  39  
K2R  H7     H7   H  0  1  N  N  N  -8.394  -14.870  -11.774   -6.402   3.262   0.235  H7     K2R  40  
K2R  H8     H8   H  0  1  N  N  N  -8.847  -13.092  -13.459   -4.093   4.018   0.621  H8     K2R  41  
K2R  H9     H9   H  0  1  N  N  N  -7.403  -12.895  -15.431   -2.314   2.377   1.061  H9     K2R  42  
K2R  H10    H10  H  0  1  N  N  N  -3.577  -16.374  -18.127   -2.128  -3.203   2.657  H10    K2R  43  
K2R  H11    H11  H  0  1  N  N  N  -5.051  -10.147  -17.955    1.346   1.179  -0.674  H11    K2R  44  
K2R  H12    H12  H  0  1  N  N  N  -2.989  -12.620  -20.133    2.309  -1.848   1.411  H12    K2R  45  
K2R  H13    H13  H  0  1  N  N  N  -5.492  -11.690  -20.882    1.667  -1.960  -1.543  H13    K2R  46  
K2R  H14    H14  H  0  1  N  N  N  -3.953  -12.718  -22.378    2.078  -4.259  -1.043  H14    K2R  47  
K2R  H15    H15  H  0  1  N  N  N  -2.182   -9.951  -21.549    4.853  -1.647   0.697  H15    K2R  48  
K2R  H16    H16  H  0  1  N  N  N  -4.965   -9.365  -20.353    3.884  -1.785  -2.164  H16    K2R  49  
K2R  H17    H17  H  0  1  N  N  N  -4.364   -8.593  -22.517    4.089  -4.114  -1.574  H17    K2R  50  
K2R  H18    H18  H  0  1  N  N  N  -2.781   -7.587  -20.848    6.205  -0.852  -1.275  H18    K2R  51  
K2R  H19    H19  H  0  1  N  N  N  -2.983   -8.207  -19.174    4.921   0.326  -1.640  H19    K2R  52  
K2R  H20    H20  H  0  1  N  N  N   1.560   -6.705  -19.741    8.064   3.382   0.825  H20    K2R  53  
K2R  H21    H21  H  0  1  N  N  N  -1.648   -6.050  -17.898    8.827   0.450  -0.064  H21    K2R  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K2R  "O3'"  "C3'"  SING  N  N   1  
K2R  "O2'"  "C2'"  SING  N  N   2  
K2R  "C3'"  "C2'"  SING  N  N   3  
K2R  "C3'"  "C4'"  SING  N  N   4  
K2R  "C2'"  "C1'"  SING  N  N   5  
K2R  "C4'"  "C5'"  SING  N  N   6  
K2R  "C4'"  "O4'"  SING  N  N   7  
K2R  "C5'"  "O5'"  SING  N  N   8  
K2R  O1P    P      DOUB  N  N   9  
K2R  "O5'"  P      SING  N  N  10  
K2R  "C1'"  "O4'"  SING  N  N  11  
K2R  "C1'"  N9     SING  N  N  12  
K2R  O3P    P      SING  N  N  13  
K2R  P      O2P    SING  N  N  14  
K2R  N9     C4     SING  Y  N  15  
K2R  N9     C8     SING  Y  N  16  
K2R  N3     C4     SING  Y  N  17  
K2R  N3     C2     DOUB  Y  N  18  
K2R  C4     C5     DOUB  Y  N  19  
K2R  C2     N1     SING  Y  N  20  
K2R  C8     N7     DOUB  Y  N  21  
K2R  C5     N7     SING  Y  N  22  
K2R  C5     C6     SING  Y  N  23  
K2R  N1     C6     DOUB  Y  N  24  
K2R  C6     CA     SING  N  N  25  
K2R  CA     CB2    DOUB  Y  N  26  
K2R  CA     CB1    SING  Y  N  27  
K2R  CB2    CG2    SING  Y  N  28  
K2R  CB1    CG1    DOUB  Y  N  29  
K2R  CG2    CD1    DOUB  Y  N  30  
K2R  CG1    CD1    SING  Y  N  31  
K2R  CG1    CD2    SING  N  N  32  
K2R  CE     CD2    SING  N  N  33  
K2R  CE     CZ     SING  N  N  34  
K2R  OZ2    CZ     DOUB  N  N  35  
K2R  CZ     OZ1    SING  N  N  36  
K2R  OZ1    H1     SING  N  N  37  
K2R  CE     H2     SING  N  N  38  
K2R  CE     H3     SING  N  N  39  
K2R  CD2    H4     SING  N  N  40  
K2R  CD2    H5     SING  N  N  41  
K2R  CB1    H6     SING  N  N  42  
K2R  CD1    H7     SING  N  N  43  
K2R  CG2    H8     SING  N  N  44  
K2R  CB2    H9     SING  N  N  45  
K2R  C2     H10    SING  N  N  46  
K2R  C8     H11    SING  N  N  47  
K2R  "C1'"  H12    SING  N  N  48  
K2R  "C2'"  H13    SING  N  N  49  
K2R  "O2'"  H14    SING  N  N  50  
K2R  "C4'"  H15    SING  N  N  51  
K2R  "C3'"  H16    SING  N  N  52  
K2R  "O3'"  H17    SING  N  N  53  
K2R  "C5'"  H18    SING  N  N  54  
K2R  "C5'"  H19    SING  N  N  55  
K2R  O3P    H20    SING  N  N  56  
K2R  O2P    H21    SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K2R  InChI             InChI                 1.03   "InChI=1S/C19H21N4O9P/c24-13(25)5-4-10-2-1-3-11(6-10)14-15-18(21-8-20-14)23(9-22-15)19-17(27)16(26)12(32-19)7-31-33(28,29)30/h1-3,6,8-9,12,16-17,19,26-27H,4-5,7H2,(H,24,25)(H2,28,29,30)/t12-,16-,17-,19-/m1/s1"  
K2R  InChIKey          InChI                 1.03   OPBOIJBNPKQEFR-MYFFOXHASA-N  
K2R  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4cccc(CCC(O)=O)c4"  
K2R  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4cccc(CCC(O)=O)c4"  
K2R  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)c2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)CCC(=O)O"  
K2R  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc(c1)c2c3c(ncn2)n(cn3)C4C(C(C(O4)COP(=O)(O)O)O)O)CCC(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K2R
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[3-[9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]phenyl]propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K2R  "Create component"  2020-05-25  PDBJ  
K2R  "Initial release"   2020-11-25  RCSB  
##
