data_JYR
# 
_chem_comp.id                                    JYR 
_chem_comp.name                                  "methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H7 N O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2022-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        253.231 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JYR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XMD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JYR C10 C1  C 0  1 N N N 189.464 195.756 169.513 5.548  -0.025 0.002  C10 JYR 1  
JYR C1  C2  C 0  1 Y N N 195.384 199.033 173.394 -2.885 0.084  0.005  C1  JYR 2  
JYR C2  C3  C 0  1 Y N N 194.430 198.074 173.064 -1.789 -0.722 0.011  C2  JYR 3  
JYR C3  C4  C 0  1 Y N N 193.530 198.290 172.105 -0.489 -0.166 0.007  C3  JYR 4  
JYR C4  C5  C 0  1 Y N N 193.559 199.461 171.446 -0.351 1.226  -0.003 C4  JYR 5  
JYR C5  C6  C 0  1 Y N N 194.455 200.411 171.713 -1.495 2.035  -0.008 C5  JYR 6  
JYR C6  C7  C 0  1 Y N N 195.397 200.234 172.710 -2.745 1.466  -0.004 C6  JYR 7  
JYR C7  C8  C 0  1 Y N N 192.551 197.468 171.668 0.795  -0.843 0.011  C7  JYR 8  
JYR C8  C9  C 0  1 Y N N 191.820 198.017 170.697 1.862  -0.009 0.005  C8  JYR 9  
JYR C9  C10 C 0  1 N N N 190.811 197.466 170.038 3.215  -0.436 0.007  C9  JYR 10 
JYR N1  N1  N 1  1 N N N 196.277 198.819 174.353 -4.237 -0.517 0.003  N1  JYR 11 
JYR O1  O1  O -1 1 N N N 197.197 199.818 174.637 -4.366 -1.728 0.006  O1  JYR 12 
JYR O2  O2  O 0  1 N N N 196.262 197.628 175.035 -5.222 0.200  -0.002 O2  JYR 13 
JYR O3  O3  O 0  1 N N N 192.322 196.230 172.177 0.916  -2.194 0.021  O3  JYR 14 
JYR O4  O4  O 0  1 N N N 190.509 196.193 170.382 4.210  0.475  0.000  O4  JYR 15 
JYR O5  O5  O 0  1 N N N 190.204 198.104 169.181 3.478  -1.624 0.014  O5  JYR 16 
JYR S1  S1  S 0  1 Y N N 192.360 199.416 170.373 1.351  1.667  -0.006 S1  JYR 17 
JYR H1  H1  H 0  1 N N N 189.189 194.720 169.762 6.249  0.810  -0.004 H1  JYR 18 
JYR H2  H2  H 0  1 N N N 188.587 196.408 169.637 5.709  -0.628 0.896  H2  JYR 19 
JYR H3  H3  H 0  1 N N N 189.811 195.803 168.470 5.708  -0.639 -0.884 H3  JYR 20 
JYR H4  H4  H 0  1 N N N 194.419 197.135 173.597 -1.913 -1.795 0.018  H4  JYR 21 
JYR H6  H6  H 0  1 N N N 194.445 201.329 171.144 -1.393 3.110  -0.014 H6  JYR 22 
JYR H7  H7  H 0  1 N N N 196.116 201.005 172.945 -3.623 2.096  -0.009 H7  JYR 23 
JYR H9  H9  H 0  1 N N N 191.589 195.831 171.723 0.950  -2.592 -0.860 H9  JYR 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JYR C10 O4 SING N N 1  
JYR C1  C2 DOUB Y N 2  
JYR C1  C6 SING Y N 3  
JYR C1  N1 SING N N 4  
JYR C2  C3 SING Y N 5  
JYR C3  C4 DOUB Y N 6  
JYR C3  C7 SING Y N 7  
JYR C4  C5 SING Y N 8  
JYR C4  S1 SING Y N 9  
JYR C5  C6 DOUB Y N 10 
JYR C7  C8 DOUB Y N 11 
JYR C7  O3 SING N N 12 
JYR C8  C9 SING N N 13 
JYR C8  S1 SING Y N 14 
JYR C9  O4 SING N N 15 
JYR C9  O5 DOUB N N 16 
JYR N1  O1 SING N N 17 
JYR N1  O2 DOUB N N 18 
JYR C10 H1 SING N N 19 
JYR C10 H2 SING N N 20 
JYR C10 H3 SING N N 21 
JYR C2  H4 SING N N 22 
JYR C5  H6 SING N N 23 
JYR C6  H7 SING N N 24 
JYR O3  H9 SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JYR InChI            InChI                1.06  "InChI=1S/C10H7NO5S/c1-16-10(13)9-8(12)6-4-5(11(14)15)2-3-7(6)17-9/h2-4,12H,1H3" 
JYR InChIKey         InChI                1.06  GYYAQCMJASDSIH-UHFFFAOYSA-N                                                      
JYR SMILES_CANONICAL CACTVS               3.385 "COC(=O)c1sc2ccc(cc2c1O)[N+]([O-])=O"                                            
JYR SMILES           CACTVS               3.385 "COC(=O)c1sc2ccc(cc2c1O)[N+]([O-])=O"                                            
JYR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)c1c(c2cc(ccc2s1)[N+](=O)[O-])O"                                          
JYR SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)c1c(c2cc(ccc2s1)[N+](=O)[O-])O"                                          
# 
_pdbx_chem_comp_identifier.comp_id           JYR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl 5-nitro-3-oxidanyl-1-benzothiophene-2-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JYR "Create component" 2022-09-02 PDBJ 
JYR "Initial release"  2022-12-21 RCSB 
# 
