data_JVR
# 
_chem_comp.id                                    JVR 
_chem_comp.name                                  "4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-02 
_chem_comp.pdbx_modified_date                    2023-04-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JVR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TTE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JVR C10 C1  C 0 1 Y N N -6.228  -8.506  38.331 -1.081 -0.913 0.225  C10 JVR 1  
JVR C01 C2  C 0 1 N N N -6.634  -9.476  40.994 -0.268 -3.433 -0.661 C01 JVR 2  
JVR C02 C3  C 0 1 N N N -6.234  -8.010  40.784 0.662  -2.653 0.232  C02 JVR 3  
JVR C03 C4  C 0 1 Y N N -7.330  -6.418  39.186 1.251  -0.239 0.120  C03 JVR 4  
JVR C04 C5  C 0 1 Y N N -7.673  -4.169  39.706 1.821  1.980  -0.127 C04 JVR 5  
JVR C05 C6  C 0 1 Y N N -9.105  -5.158  38.195 3.533  0.461  0.165  C05 JVR 6  
JVR C06 C7  C 0 1 Y N N -8.442  -6.359  38.311 2.606  -0.556 0.241  C06 JVR 7  
JVR C07 C8  C 0 1 N N N -9.100  -7.407  37.428 3.306  -1.878 0.454  C07 JVR 8  
JVR C08 C9  C 0 1 N N N -10.497 -6.784  37.219 4.728  -1.508 0.931  C08 JVR 9  
JVR C09 C10 C 0 1 N N N -10.266 -5.254  37.237 4.927  -0.104 0.320  C09 JVR 10 
JVR C11 C11 C 0 1 Y N N -5.868  -8.087  37.035 -1.523 0.275  0.780  C11 JVR 11 
JVR C12 C12 C 0 1 Y N N -5.565  -9.041  36.062 -2.877 0.559  0.808  C12 JVR 12 
JVR C13 C13 C 0 1 Y N N -5.613  -10.415 36.385 -3.789 -0.344 0.283  C13 JVR 13 
JVR C14 C14 C 0 1 N N N -4.571  -11.247 34.267 -5.502 1.183  0.905  C14 JVR 14 
JVR C15 C15 C 0 1 Y N N -5.963  -10.840 37.659 -3.350 -1.536 -0.275 C15 JVR 15 
JVR C16 C16 C 0 1 Y N N -6.272  -9.884  38.620 -1.995 -1.824 -0.308 C16 JVR 16 
JVR N01 N1  N 0 1 N N N -6.569  -7.595  39.397 0.287  -1.232 0.191  N01 JVR 17 
JVR N02 N2  N 0 1 Y N N -6.960  -5.316  39.867 0.900  1.031  -0.059 N02 JVR 18 
JVR N03 N3  N 0 1 N N N -7.318  -3.007  40.405 1.424  3.293  -0.314 N03 JVR 19 
JVR N04 N4  N 0 1 Y N N -8.738  -4.069  38.876 3.112  1.706  -0.020 N04 JVR 20 
JVR N05 N5  N 0 1 N N N -6.631  -10.315 39.915 -1.531 -3.017 -0.873 N05 JVR 21 
JVR O01 O1  O 0 1 N N N -6.960  -9.959  42.074 0.126  -4.448 -1.196 O01 JVR 22 
JVR O02 O2  O 0 1 N N N -5.329  -11.419 35.479 -5.119 -0.061 0.316  O02 JVR 23 
JVR H1  H1  H 0 1 N N N -5.152  -7.899  40.948 0.581  -3.022 1.254  H1  JVR 24 
JVR H2  H2  H 0 1 N N N -6.780  -7.376  41.498 1.688  -2.771 -0.119 H2  JVR 25 
JVR H3  H3  H 0 1 N N N -9.164  -8.380  37.936 2.791  -2.461 1.217  H3  JVR 26 
JVR H4  H4  H 0 1 N N N -8.564  -7.526  36.475 3.353  -2.436 -0.481 H4  JVR 27 
JVR H5  H5  H 0 1 N N N -11.177 -7.081  38.031 4.773  -1.467 2.020  H5  JVR 28 
JVR H6  H6  H 0 1 N N N -10.919 -7.099  36.253 5.463  -2.210 0.538  H6  JVR 29 
JVR H7  H7  H 0 1 N N N -10.001 -4.872  36.240 5.415  -0.180 -0.652 H7  JVR 30 
JVR H8  H8  H 0 1 N N N -11.148 -4.715  37.614 5.516  0.521  0.992  H8  JVR 31 
JVR H9  H9  H 0 1 N N N -5.827  -7.035  36.796 -0.813 0.978  1.189  H9  JVR 32 
JVR H10 H10 H 0 1 N N N -5.294  -8.729  35.064 -3.224 1.485  1.241  H10 JVR 33 
JVR H11 H11 H 0 1 N N N -4.500  -12.209 33.739 -6.587 1.284  0.867  H11 JVR 34 
JVR H12 H12 H 0 1 N N N -5.073  -10.511 33.622 -5.171 1.211  1.943  H12 JVR 35 
JVR H13 H13 H 0 1 N N N -3.561  -10.889 34.514 -5.041 2.003  0.355  H13 JVR 36 
JVR H14 H14 H 0 1 N N N -5.995  -11.892 37.899 -4.062 -2.238 -0.683 H14 JVR 37 
JVR H15 H15 H 0 1 N N N -8.043  -2.447  40.805 2.088  3.998  -0.365 H15 JVR 38 
JVR H17 H17 H 0 1 N N N -6.893  -11.271 40.048 -2.126 -3.550 -1.423 H17 JVR 39 
JVR C1  C17 C 0 1 N N N ?       ?       ?      0.000  3.617  -0.434 C1  JVR 40 
JVR C2  C18 C 0 1 N N N ?       ?       ?      -0.436 5.035  -0.057 C2  JVR 41 
JVR C3  C19 C 0 1 N N N ?       ?       ?      -0.409 4.607  -1.526 C3  JVR 42 
JVR H16 H16 H 0 1 N N N ?       ?       ?      -0.688 2.803  -0.209 H16 JVR 43 
JVR H18 H18 H 0 1 N N N ?       ?       ?      -1.411 5.152  0.415  H18 JVR 44 
JVR H19 H19 H 0 1 N N N ?       ?       ?      0.337  5.726  0.280  H19 JVR 45 
JVR H20 H20 H 0 1 N N N ?       ?       ?      0.381  5.018  -2.155 H20 JVR 46 
JVR H21 H21 H 0 1 N N N ?       ?       ?      -1.367 4.444  -2.020 H21 JVR 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JVR C14 O02 SING N N 1  
JVR O02 C13 SING N N 2  
JVR C12 C13 DOUB Y N 3  
JVR C12 C11 SING Y N 4  
JVR C13 C15 SING Y N 5  
JVR C11 C10 DOUB Y N 6  
JVR C08 C09 SING N N 7  
JVR C08 C07 SING N N 8  
JVR C09 C05 SING N N 9  
JVR C07 C06 SING N N 10 
JVR C15 C16 DOUB Y N 11 
JVR C05 C06 DOUB Y N 12 
JVR C05 N04 SING Y N 13 
JVR C06 C03 SING Y N 14 
JVR C10 C16 SING Y N 15 
JVR C10 N01 SING N N 16 
JVR C16 N05 SING N N 17 
JVR N04 C04 DOUB Y N 18 
JVR C03 N01 SING N N 19 
JVR C03 N02 DOUB Y N 20 
JVR N01 C02 SING N N 21 
JVR C04 N02 SING Y N 22 
JVR C04 N03 SING N N 23 
JVR N05 C01 SING N N 24 
JVR C02 C01 SING N N 25 
JVR C01 O01 DOUB N N 26 
JVR C02 H1  SING N N 27 
JVR C02 H2  SING N N 28 
JVR C07 H3  SING N N 29 
JVR C07 H4  SING N N 30 
JVR C08 H5  SING N N 31 
JVR C08 H6  SING N N 32 
JVR C09 H7  SING N N 33 
JVR C09 H8  SING N N 34 
JVR C11 H9  SING N N 35 
JVR C12 H10 SING N N 36 
JVR C14 H11 SING N N 37 
JVR C14 H12 SING N N 38 
JVR C14 H13 SING N N 39 
JVR C15 H14 SING N N 40 
JVR N03 H15 SING N N 41 
JVR N05 H17 SING N N 42 
JVR N03 C1  SING N N 43 
JVR C1  C2  SING N N 44 
JVR C2  C3  SING N N 45 
JVR C3  C1  SING N N 46 
JVR C1  H16 SING N N 47 
JVR C2  H18 SING N N 48 
JVR C2  H19 SING N N 49 
JVR C3  H20 SING N N 50 
JVR C3  H21 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JVR SMILES           ACDLabs              12.01 "COc1ccc2c(NC(=O)CN2c2nc(NC3CC3)nc3CCCc32)c1"                                                                                                          
JVR InChI            InChI                1.03  "InChI=1S/C19H21N5O2/c1-26-12-7-8-16-15(9-12)21-17(25)10-24(16)18-13-3-2-4-14(13)22-19(23-18)20-11-5-6-11/h7-9,11H,2-6,10H2,1H3,(H,21,25)(H,20,22,23)" 
JVR InChIKey         InChI                1.03  PQVFTRMKRDTVIW-UHFFFAOYSA-N                                                                                                                            
JVR SMILES_CANONICAL CACTVS               3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(NC4CC4)nc5CCCc35"                                                                                                          
JVR SMILES           CACTVS               3.385 "COc1ccc2N(CC(=O)Nc2c1)c3nc(NC4CC4)nc5CCCc35"                                                                                                          
JVR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)NC5CC5)CCC4"                                                                                                        
JVR SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1)NC(=O)CN2c3c4c(nc(n3)NC5CC5)CCC4"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JVR "SYSTEMATIC NAME" ACDLabs              12.01 "4-[2-(cyclopropylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-3,4-dihydroquinoxalin-2(1H)-one" 
JVR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[2-(cyclopropylamino)-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl]-7-methoxy-1,3-dihydroquinoxalin-2-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JVR "Create component" 2022-02-02 RCSB 
JVR "Initial release"  2023-04-12 RCSB 
# 
