data_G2R
#

_chem_comp.id                                   G2R
_chem_comp.name                                 "[(2R,3R,4R,5R)-5-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "GUANOSINE DIPHOSPHORIBOSE INTERMEDIATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-08-30
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       559.316
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G2R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2I66
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G2R  O6      O6    O  0  1  N  N  N  13.114   5.355  -20.173   4.095   5.356  -2.615  O6      G2R   1  
G2R  C6      C6    C  0  1  Y  N  N  14.254   4.894  -20.093   3.177   4.547  -2.555  C6      G2R   2  
G2R  N1      N1    N  0  1  Y  N  N  15.285   5.647  -19.528   1.855   4.789  -2.953  N1      G2R   3  
G2R  C2      C2    C  0  1  Y  N  N  16.568   5.106  -19.451   0.796   3.853  -2.882  C2      G2R   4  
G2R  N2      N2    N  0  1  N  N  N  17.527   5.843  -18.905  -0.418   4.305  -3.328  N2      G2R   5  
G2R  N3      N3    N  0  1  Y  N  N  16.808   3.860  -19.921   0.959   2.632  -2.421  N3      G2R   6  
G2R  C4      C4    C  0  1  Y  N  N  15.824   3.111  -20.478   2.228   2.379  -2.031  C4      G2R   7  
G2R  C5      C5    C  0  1  Y  N  N  14.533   3.621  -20.571   3.323   3.208  -2.056  C5      G2R   8  
G2R  N7      N7    N  0  1  Y  N  N  13.767   2.704  -21.150   4.442   2.594  -1.577  N7      G2R   9  
G2R  C8      C8    C  0  1  Y  N  N  14.531   1.653  -21.412   4.028   1.384  -1.257  C8      G2R  10  
G2R  N9      N9    N  0  1  Y  N  N  15.780   1.884  -21.013   2.691   1.205  -1.513  N9      G2R  11  
G2R  "C1'"   C1*   C  0  1  N  N  R  16.917   0.903  -21.142   1.925  -0.020  -1.272  "C1'"   G2R  12  
G2R  "O4'"   O4*   O  0  1  N  N  N  17.582   1.027  -22.394   2.437  -0.683  -0.102  "O4'"   G2R  13  
G2R  "C2'"   C2*   C  0  1  N  N  R  16.515  -0.591  -21.166   1.979  -1.014  -2.435  "C2'"   G2R  14  
G2R  "O2'"   O2*   O  0  1  N  N  N  16.298  -1.076  -19.835   0.659  -1.457  -2.742  "O2'"   G2R  15  
G2R  "C3'"   C3*   C  0  1  N  N  R  17.767  -1.252  -21.756   2.802  -2.170  -1.897  "C3'"   G2R  16  
G2R  "O3'"   O3*   O  0  1  N  N  N  17.420  -2.174  -22.786   4.176  -1.951  -2.189  "O3'"   G2R  17  
G2R  "C4'"   C4*   C  0  1  N  N  R  18.544  -0.050  -22.332   2.552  -2.085  -0.396  "C4'"   G2R  18  
G2R  "C5'"   C5*   C  0  1  N  N  N  19.187  -0.089  -23.724   3.631  -2.694   0.480  "C5'"   G2R  19  
G2R  "O5'"   O5*   O  0  1  N  N  N  19.667   1.242  -23.953   3.751  -4.073   0.174  "O5'"   G2R  20  
G2R  PA      PA    P  0  1  N  N  R  20.686   1.687  -25.102   4.843  -4.951   0.981  PA      G2R  21  
G2R  O1A     O1A   O  0  1  N  N  N  21.766   0.689  -25.247   4.925  -6.404   0.615  O1A     G2R  22  
G2R  O2A     O2A   O  0  1  N  N  N  21.032   3.109  -24.824   4.521  -4.656   2.539  O2A     G2R  23  
G2R  O3A     O3A   O  0  1  N  N  N  19.793   1.563  -26.437   6.191  -4.100   0.710  O3A     G2R  24  
G2R  PB      PB    P  0  1  N  N  R  18.253   2.058  -26.485   7.689  -4.269   1.293  PB      G2R  25  
G2R  O2B     O2B   O  0  1  N  N  N  17.549   1.244  -27.515   7.784  -4.156   2.787  O2B     G2R  26  
G2R  O1B     O1B   O  0  1  N  N  N  17.703   2.154  -25.101   8.158  -5.700   0.700  O1B     G2R  27  
G2R  O5X     O5X   O  0  1  N  N  N  18.405   3.567  -27.075   8.569  -3.186   0.474  O5X     G2R  28  
G2R  C5X     C5X   C  0  1  N  N  N  19.059   3.813  -28.357   8.560  -3.192  -0.943  C5X     G2R  29  
G2R  C4X     C4X   C  0  1  N  N  R  18.088   4.168  -29.502   9.466  -2.077  -1.450  C4X     G2R  30  
G2R  O4X     O4X   O  0  1  N  N  N  17.057   5.043  -29.046   9.398  -2.069  -2.893  O4X     G2R  31  
G2R  C1X     C1X   C  0  1  N  N  N  17.355   6.399  -29.444   8.756  -0.859  -3.323  C1X     G2R  32  
G2R  C2X     C2X   C  0  1  N  N  S  18.458   6.360  -30.490   8.073  -0.285  -2.101  C2X     G2R  33  
G2R  O2X     O2X   O  0  1  N  N  N  17.911   6.931  -31.684   7.892   1.111  -2.181  O2X     G2R  34  
G2R  C3X     C3X   C  0  1  N  N  S  18.728   4.882  -30.708   9.022  -0.692  -0.995  C3X     G2R  35  
G2R  O3X     O3X   O  0  1  N  N  N  18.066   4.471  -31.918  10.167   0.159  -0.989  O3X     G2R  36  
G2R  HN1     HN1   H  0  1  N  N  N  15.105   6.567  -19.181   1.639   5.710  -3.323  HN1     G2R  37  
G2R  HN21    1HN2  H  0  0  N  N  N  18.387   5.332  -18.915  -0.972   3.697  -3.886  HN21    G2R  38  
G2R  HN22    2HN2  H  0  0  N  N  N  17.408   6.766  -18.540  -0.699   5.225  -3.077  HN22    G2R  39  
G2R  H8      H8    H  0  1  N  N  N  14.190   0.742  -21.881   4.643   0.599  -0.838  H8      G2R  40  
G2R  "H1'"   H1*   H  0  1  N  N  N  17.517   1.152  -20.254   0.906   0.319  -1.058  "H1'"   G2R  41  
G2R  "H2'"   H2*   H  0  1  N  N  N  15.589  -0.787  -21.726   2.398  -0.576  -3.347  "H2'"   G2R  42  
G2R  "HO2'"  HO2*  H  0  0  N  N  N  16.250  -2.025  -19.847   0.342  -0.897  -3.468  "HO2'"  G2R  43  
G2R  "H3'"   H3*   H  0  1  N  N  N  18.342  -1.834  -21.021   2.516  -3.145  -2.302  "H3'"   G2R  44  
G2R  "HO3'"  HO3*  H  0  0  N  N  N  17.343  -1.712  -23.612   4.225  -1.696  -3.124  "HO3'"  G2R  45  
G2R  "H4'"   H4*   H  0  1  N  N  N  19.414   0.019  -21.662   1.586  -2.542  -0.150  "H4'"   G2R  46  
G2R  "H5'1"  1H5*  H  0  0  N  N  N  18.451  -0.378  -24.489   3.371  -2.589   1.538  "H5'1"  G2R  47  
G2R  "H5'2"  2H5*  H  0  0  N  N  N  19.997  -0.832  -23.780   4.594  -2.208   0.298  "H5'2"  G2R  48  
G2R  HO2A    HO2A  H  0  0  N  N  N  21.106   3.240  -23.886   5.038  -5.125   3.228  HO2A    G2R  49  
G2R  HO1B    HO1B  H  0  0  N  N  N  18.418   2.174  -24.476   8.994  -6.097   1.025  HO1B    G2R  50  
G2R  H5X1    1H5X  H  0  0  N  N  N  19.600   2.899  -28.643   8.917  -4.165  -1.294  H5X1    G2R  51  
G2R  H5X2    2H5X  H  0  0  N  N  N  19.720   4.681  -28.217   7.534  -3.040  -1.291  H5X2    G2R  52  
G2R  H4X     H4X   H  0  1  N  N  N  17.714   3.186  -29.826  10.501  -2.294  -1.167  H4X     G2R  53  
G2R  H1X1    1H1X  H  0  0  N  N  N  17.689   6.980  -28.571   8.047  -1.086  -4.126  H1X1    G2R  54  
G2R  H1X2    2H1X  H  0  0  N  N  N  16.456   6.877  -29.861   9.516  -0.184  -3.730  H1X2    G2R  55  
G2R  H2X     H2X   H  0  1  N  N  N  19.373   6.900  -30.205   7.098  -0.765  -1.956  H2X     G2R  56  
G2R  HO2X    HO2X  H  0  0  N  N  N  17.790   7.865  -31.562   8.162   1.489  -1.324  HO2X    G2R  57  
G2R  H3X     H3X   H  0  1  N  N  N  19.800   4.653  -30.795   8.579  -0.663   0.004  H3X     G2R  58  
G2R  HO3X    HO3X  H  0  0  N  N  N  17.135   4.380  -31.755  10.509   0.153  -0.082  HO3X    G2R  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G2R  O6     C6      DOUB  N  N   1  
G2R  C6     C5      SING  Y  N   2  
G2R  C6     N1      SING  Y  N   3  
G2R  N1     C2      SING  Y  N   4  
G2R  N1     HN1     SING  N  N   5  
G2R  C2     N3      DOUB  Y  N   6  
G2R  C2     N2      SING  N  N   7  
G2R  N2     HN21    SING  N  N   8  
G2R  N2     HN22    SING  N  N   9  
G2R  N3     C4      SING  Y  N  10  
G2R  C4     N9      SING  Y  N  11  
G2R  C4     C5      DOUB  Y  N  12  
G2R  C5     N7      SING  Y  N  13  
G2R  N7     C8      DOUB  Y  N  14  
G2R  C8     N9      SING  Y  N  15  
G2R  C8     H8      SING  N  N  16  
G2R  N9     "C1'"   SING  N  N  17  
G2R  "C1'"  "O4'"   SING  N  N  18  
G2R  "C1'"  "C2'"   SING  N  N  19  
G2R  "C1'"  "H1'"   SING  N  N  20  
G2R  "O4'"  "C4'"   SING  N  N  21  
G2R  "C2'"  "C3'"   SING  N  N  22  
G2R  "C2'"  "O2'"   SING  N  N  23  
G2R  "C2'"  "H2'"   SING  N  N  24  
G2R  "O2'"  "HO2'"  SING  N  N  25  
G2R  "C3'"  "O3'"   SING  N  N  26  
G2R  "C3'"  "C4'"   SING  N  N  27  
G2R  "C3'"  "H3'"   SING  N  N  28  
G2R  "O3'"  "HO3'"  SING  N  N  29  
G2R  "C4'"  "C5'"   SING  N  N  30  
G2R  "C4'"  "H4'"   SING  N  N  31  
G2R  "C5'"  "O5'"   SING  N  N  32  
G2R  "C5'"  "H5'1"  SING  N  N  33  
G2R  "C5'"  "H5'2"  SING  N  N  34  
G2R  "O5'"  PA      SING  N  N  35  
G2R  PA     O3A     SING  N  N  36  
G2R  PA     O1A     DOUB  N  N  37  
G2R  PA     O2A     SING  N  N  38  
G2R  O2A    HO2A    SING  N  N  39  
G2R  O3A    PB      SING  N  N  40  
G2R  PB     O2B     DOUB  N  N  41  
G2R  PB     O5X     SING  N  N  42  
G2R  PB     O1B     SING  N  N  43  
G2R  O1B    HO1B    SING  N  N  44  
G2R  O5X    C5X     SING  N  N  45  
G2R  C5X    C4X     SING  N  N  46  
G2R  C5X    H5X1    SING  N  N  47  
G2R  C5X    H5X2    SING  N  N  48  
G2R  C4X    C3X     SING  N  N  49  
G2R  C4X    O4X     SING  N  N  50  
G2R  C4X    H4X     SING  N  N  51  
G2R  O4X    C1X     SING  N  N  52  
G2R  C1X    C2X     SING  N  N  53  
G2R  C1X    H1X1    SING  N  N  54  
G2R  C1X    H1X2    SING  N  N  55  
G2R  C2X    O2X     SING  N  N  56  
G2R  C2X    C3X     SING  N  N  57  
G2R  C2X    H2X     SING  N  N  58  
G2R  O2X    HO2X    SING  N  N  59  
G2R  C3X    O3X     SING  N  N  60  
G2R  C3X    H3X     SING  N  N  61  
G2R  O3X    HO3X    SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G2R  SMILES            ACDLabs               10.04  "O=P(O)(OCC1OCC(O)C1O)OP(=O)(O)OCC4OC(n3cnc2c3N=C(N)NC2=O)C(O)C4O"  
G2R  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]4OC[C@H](O)[C@@H]4O)[C@H](O)[C@H]3O"  
G2R  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](O)[CH]4O)[CH](O)[CH]3O"  
G2R  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H](CO4)O)O)O)O)N=C(NC2=O)N"  
G2R  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)O)O)O)O)N=C(NC2=O)N"  
G2R  InChI             InChI                 1.03   "InChI=1S/C15H23N5O14P2/c16-15-18-12-8(13(25)19-15)17-4-20(12)14-11(24)10(23)7(33-14)3-32-36(28,29)34-35(26,27)31-2-6-9(22)5(21)1-30-6/h4-7,9-11,14,21-24H,1-3H2,(H,26,27)(H,28,29)(H3,16,18,19,25)/t5-,6+,7+,9-,10-,11+,14+/m0/s1"  
G2R  InChIKey          InChI                 1.03   NOLLEWZDVQOFJY-DCLLCRAESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G2R  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
G2R  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxy-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G2R  "Create component"   2006-08-30  EBI   
G2R  "Modify descriptor"  2011-06-04  RCSB  
G2R  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     G2R
_pdbx_chem_comp_synonyms.name        "GUANOSINE DIPHOSPHORIBOSE INTERMEDIATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
