data_D3R
#

_chem_comp.id                                   D3R
_chem_comp.name                                 "~{tert}-butyl (2'~{R},3~{R})-2'-[3-[4-(hydroxymethyl)-3-methylsulfonyl-phenyl]phenyl]-2-oxidanylidene-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H32 N2 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-19
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       548.650
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D3R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6K9G
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D3R  C6   C1   C  0  1  Y  N  N  -16.313  22.161   2.010   1.075  -2.469   1.684  C6   D3R   1  
D3R  C2   C2   C  0  1  Y  N  N  -16.174  22.555  -0.364  -0.106  -4.506   1.251  C2   D3R   2  
D3R  C8   C3   C  0  1  N  N  N  -12.618  22.085   2.559   3.476  -2.816  -1.181  C8   D3R   3  
D3R  C5   C4   C  0  1  Y  N  N  -14.928  22.192   2.091   1.892  -2.713   0.602  C5   D3R   4  
D3R  C4   C5   C  0  1  Y  N  N  -14.178  22.382   0.936   1.722  -3.860  -0.169  C4   D3R   5  
D3R  C13  C6   C  0  1  N  N  N  -14.159  20.858   4.177   4.188  -1.761   0.988  C13  D3R   6  
D3R  C14  C7   C  0  1  N  N  N  -12.149  23.276   6.053   3.844   1.648  -0.350  C14  D3R   7  
D3R  C17  C8   C  0  1  N  N  N  -10.855  25.514   6.217   4.936   3.769  -0.277  C17  D3R   8  
D3R  C18  C9   C  0  1  N  N  N  -10.630  25.402   7.733   3.815   4.406   0.545  C18  D3R   9  
D3R  C3   C10  C  0  1  Y  N  N  -14.787  22.577  -0.299   0.711  -4.756   0.168  C3   D3R  10  
D3R  C10  C11  C  0  1  N  N  R  -13.956  23.322   4.246   2.649  -0.557  -0.448  C10  D3R  11  
D3R  C9   C12  C  0  1  N  N  R  -13.979  22.097   3.267   3.041  -1.973  -0.016  C9   D3R  12  
D3R  C19  C13  C  0  1  N  N  N   -9.591  25.076   5.461   4.692   4.034  -1.764  C19  D3R  13  
D3R  C20  C14  C  0  1  N  N  N  -11.378  26.918   5.811   6.279   4.375   0.134  C20  D3R  14  
D3R  C21  C15  C  0  1  Y  N  N  -15.320  23.980   4.546   1.441  -0.099   0.329  C21  D3R  15  
D3R  O22  O1   O  0  1  N  N  N  -11.532  21.914   3.093   4.383  -2.578  -1.950  O22  D3R  16  
D3R  C1   C16  C  0  1  Y  N  N  -16.930  22.345   0.780   0.076  -3.367   2.014  C1   D3R  17  
D3R  N7   N1   N  0  1  N  N  N  -12.828  22.275   1.238   2.663  -3.891  -1.202  N7   D3R  18  
D3R  N11  N2   N  0  1  N  N  N  -13.208  22.681   5.348   3.798   0.316  -0.153  N11  D3R  19  
D3R  C12  C17  C  0  1  N  N  N  -13.579  21.266   5.527   4.890  -0.511   0.395  C12  D3R  20  
D3R  O15  O2   O  0  1  N  N  N  -11.413  22.668   6.793   2.880   2.228  -0.809  O15  D3R  21  
D3R  O16  O3   O  0  1  N  N  N  -11.958  24.631   5.782   4.958   2.337  -0.038  O16  D3R  22  
D3R  C23  C18  C  0  1  Y  N  N  -15.524  25.230   3.934   1.588   0.364   1.624  C23  D3R  23  
D3R  C24  C19  C  0  1  Y  N  N  -16.739  25.876   4.084   0.484   0.786   2.342  C24  D3R  24  
D3R  C25  C20  C  0  1  Y  N  N  -17.760  25.307   4.828  -0.771   0.748   1.770  C25  D3R  25  
D3R  C26  C21  C  0  1  Y  N  N  -17.591  24.067   5.452  -0.925   0.283   0.465  C26  D3R  26  
D3R  C27  C22  C  0  1  Y  N  N  -16.359  23.415   5.313   0.192  -0.137  -0.256  C27  D3R  27  
D3R  C28  C23  C  0  1  Y  N  N  -18.723  23.415   6.200  -2.272   0.239  -0.156  C28  D3R  28  
D3R  C29  C24  C  0  1  Y  N  N  -19.747  24.176   6.778  -3.387   0.669   0.562  C29  D3R  29  
D3R  C30  C25  C  0  1  Y  N  N  -20.823  23.556   7.408  -4.637   0.626  -0.021  C30  D3R  30  
D3R  C31  C26  C  0  1  Y  N  N  -20.922  22.160   7.494  -4.785   0.159  -1.314  C31  D3R  31  
D3R  C32  C27  C  0  1  Y  N  N  -19.888  21.421   6.924  -3.682  -0.269  -2.031  C32  D3R  32  
D3R  C33  C28  C  0  1  Y  N  N  -18.818  22.028   6.293  -2.426  -0.226  -1.460  C33  D3R  33  
D3R  C34  C29  C  0  1  N  N  N  -22.074  21.349   8.109  -6.153   0.114  -1.945  C34  D3R  34  
D3R  O35  O4   O  0  1  N  N  N  -21.642  20.270   8.856  -6.068  -0.518  -3.223  O35  D3R  35  
D3R  S36  S1   S  0  1  N  N  N  -22.095  24.507   8.049  -6.048   1.168   0.885  S36  D3R  36  
D3R  O37  O5   O  0  1  N  N  N  -22.511  24.045   9.330  -6.991   0.116   0.727  O37  D3R  37  
D3R  O38  O6   O  0  1  N  N  N  -23.112  24.667   7.081  -5.534   1.504   2.166  O38  D3R  38  
D3R  C39  C30  C  0  1  N  N  N  -21.558  26.025   8.476  -6.603   2.657   0.011  C39  D3R  39  
D3R  H1   H1   H  0  1  N  N  N  -16.906  21.995   2.897   1.217  -1.577   2.276  H1   D3R  40  
D3R  H2   H2   H  0  1  N  N  N  -16.668  22.703  -1.313  -0.888  -5.205   1.507  H2   D3R  41  
D3R  H3   H3   H  0  1  N  N  N  -15.225  20.604   4.276   3.800  -1.555   1.986  H3   D3R  42  
D3R  H4   H4   H  0  1  N  N  N  -13.613  19.996   3.767   4.861  -2.618   1.001  H4   D3R  43  
D3R  H5   H5   H  0  1  N  N  N  -11.540  25.718   8.264   2.858   3.974   0.252  H5   D3R  44  
D3R  H6   H6   H  0  1  N  N  N  -10.397  24.359   7.993   3.989   4.218   1.605  H6   D3R  45  
D3R  H7   H7   H  0  1  N  N  N   -9.791  26.049   8.028   3.799   5.482   0.366  H7   D3R  46  
D3R  H8   H8   H  0  1  N  N  N  -14.195  22.742  -1.187   0.563  -5.648  -0.423  H8   D3R  47  
D3R  H9   H9   H  0  1  N  N  N  -13.312  24.089   3.792   2.433  -0.540  -1.516  H9   D3R  48  
D3R  H10  H10  H  0  1  N  N  N   -8.745  25.713   5.760   4.675   5.109  -1.944  H10  D3R  49  
D3R  H11  H11  H  0  1  N  N  N   -9.364  24.027   5.703   5.490   3.580  -2.351  H11  D3R  50  
D3R  H12  H12  H  0  1  N  N  N   -9.759  25.174   4.378   3.735   3.602  -2.058  H12  D3R  51  
D3R  H13  H13  H  0  1  N  N  N  -12.280  27.157   6.394   6.453   4.186   1.194  H13  D3R  52  
D3R  H14  H14  H  0  1  N  N  N  -10.602  27.671   6.012   7.078   3.921  -0.452  H14  D3R  53  
D3R  H15  H15  H  0  1  N  N  N  -11.623  26.922   4.739   6.263   5.450  -0.045  H15  D3R  54  
D3R  H16  H16  H  0  1  N  N  N  -18.008  22.324   0.713  -0.565  -3.175   2.862  H16  D3R  55  
D3R  H17  H17  H  0  1  N  N  N  -12.097  22.332   0.558   2.723  -4.603  -1.858  H17  D3R  56  
D3R  H18  H18  H  0  1  N  N  N  -14.330  21.157   6.323   5.421   0.032   1.177  H18  D3R  57  
D3R  H19  H19  H  0  1  N  N  N  -12.695  20.659   5.771   5.578  -0.803  -0.398  H19  D3R  58  
D3R  H20  H20  H  0  1  N  N  N  -14.737  25.683   3.350   2.569   0.396   2.076  H20  D3R  59  
D3R  H21  H21  H  0  1  N  N  N  -16.893  26.836   3.615   0.605   1.146   3.353  H21  D3R  60  
D3R  H22  H22  H  0  1  N  N  N  -18.700  25.829   4.927  -1.632   1.078   2.332  H22  D3R  61  
D3R  H23  H23  H  0  1  N  N  N  -16.203  22.464   5.801   0.078  -0.494  -1.268  H23  D3R  62  
D3R  H24  H24  H  0  1  N  N  N  -19.702  25.254   6.735  -3.273   1.033   1.572  H24  D3R  63  
D3R  H25  H25  H  0  1  N  N  N  -19.923  20.343   6.976  -3.803  -0.633  -3.040  H25  D3R  64  
D3R  H26  H26  H  0  1  N  N  N  -18.040  21.415   5.863  -1.564  -0.556  -2.022  H26  D3R  65  
D3R  H27  H27  H  0  1  N  N  N  -22.660  22.013   8.761  -6.830  -0.451  -1.304  H27  D3R  66  
D3R  H28  H28  H  0  1  N  N  N  -22.713  20.977   7.295  -6.530   1.130  -2.066  H28  D3R  67  
D3R  H29  H29  H  0  1  N  N  N  -22.393  19.808   9.210  -6.913  -0.582  -3.688  H29  D3R  68  
D3R  H30  H30  H  0  1  N  N  N  -20.763  25.934   9.231  -6.959   2.384  -0.983  H30  D3R  69  
D3R  H31  H31  H  0  1  N  N  N  -21.162  26.537   7.587  -7.412   3.127   0.570  H31  D3R  70  
D3R  H32  H32  H  0  1  N  N  N  -22.394  26.606   8.892  -5.771   3.355  -0.081  H32  D3R  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D3R  C2   C3   DOUB  Y  N   1  
D3R  C2   C1   SING  Y  N   2  
D3R  C3   C4   SING  Y  N   3  
D3R  C1   C6   DOUB  Y  N   4  
D3R  C4   N7   SING  N  N   5  
D3R  C4   C5   DOUB  Y  N   6  
D3R  N7   C8   SING  N  N   7  
D3R  C6   C5   SING  Y  N   8  
D3R  C5   C9   SING  N  N   9  
D3R  C8   O22  DOUB  N  N  10  
D3R  C8   C9   SING  N  N  11  
D3R  C9   C13  SING  N  N  12  
D3R  C9   C10  SING  N  N  13  
D3R  C23  C24  DOUB  Y  N  14  
D3R  C23  C21  SING  Y  N  15  
D3R  C24  C25  SING  Y  N  16  
D3R  C13  C12  SING  N  N  17  
D3R  C10  C21  SING  N  N  18  
D3R  C10  N11  SING  N  N  19  
D3R  C21  C27  DOUB  Y  N  20  
D3R  C25  C26  DOUB  Y  N  21  
D3R  C27  C26  SING  Y  N  22  
D3R  N11  C12  SING  N  N  23  
D3R  N11  C14  SING  N  N  24  
D3R  C26  C28  SING  N  N  25  
D3R  C19  C17  SING  N  N  26  
D3R  O16  C14  SING  N  N  27  
D3R  O16  C17  SING  N  N  28  
D3R  C20  C17  SING  N  N  29  
D3R  C14  O15  DOUB  N  N  30  
D3R  C28  C33  DOUB  Y  N  31  
D3R  C28  C29  SING  Y  N  32  
D3R  C17  C18  SING  N  N  33  
D3R  C33  C32  SING  Y  N  34  
D3R  C29  C30  DOUB  Y  N  35  
D3R  C32  C31  DOUB  Y  N  36  
D3R  O38  S36  DOUB  N  N  37  
D3R  C30  C31  SING  Y  N  38  
D3R  C30  S36  SING  N  N  39  
D3R  C31  C34  SING  N  N  40  
D3R  S36  C39  SING  N  N  41  
D3R  S36  O37  DOUB  N  N  42  
D3R  C34  O35  SING  N  N  43  
D3R  C6   H1   SING  N  N  44  
D3R  C2   H2   SING  N  N  45  
D3R  C13  H3   SING  N  N  46  
D3R  C13  H4   SING  N  N  47  
D3R  C18  H5   SING  N  N  48  
D3R  C18  H6   SING  N  N  49  
D3R  C18  H7   SING  N  N  50  
D3R  C3   H8   SING  N  N  51  
D3R  C10  H9   SING  N  N  52  
D3R  C19  H10  SING  N  N  53  
D3R  C19  H11  SING  N  N  54  
D3R  C19  H12  SING  N  N  55  
D3R  C20  H13  SING  N  N  56  
D3R  C20  H14  SING  N  N  57  
D3R  C20  H15  SING  N  N  58  
D3R  C1   H16  SING  N  N  59  
D3R  N7   H17  SING  N  N  60  
D3R  C12  H18  SING  N  N  61  
D3R  C12  H19  SING  N  N  62  
D3R  C23  H20  SING  N  N  63  
D3R  C24  H21  SING  N  N  64  
D3R  C25  H22  SING  N  N  65  
D3R  C27  H23  SING  N  N  66  
D3R  C29  H24  SING  N  N  67  
D3R  C32  H25  SING  N  N  68  
D3R  C33  H26  SING  N  N  69  
D3R  C34  H27  SING  N  N  70  
D3R  C34  H28  SING  N  N  71  
D3R  O35  H29  SING  N  N  72  
D3R  C39  H30  SING  N  N  73  
D3R  C39  H31  SING  N  N  74  
D3R  C39  H32  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D3R  InChI             InChI                 1.03   "InChI=1S/C30H32N2O6S/c1-29(2,3)38-28(35)32-15-14-30(23-10-5-6-11-24(23)31-27(30)34)26(32)21-9-7-8-19(16-21)20-12-13-22(18-33)25(17-20)39(4,36)37/h5-13,16-17,26,33H,14-15,18H2,1-4H3,(H,31,34)/t26-,30-/m1/s1"  
D3R  InChIKey          InChI                 1.03   WCOXMLFEWOILDZ-PDDLMNHVSA-N  
D3R  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C@@]2([C@H]1c3cccc(c3)c4ccc(CO)c(c4)[S](C)(=O)=O)C(=O)Nc5ccccc25"  
D3R  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N1CC[C]2([CH]1c3cccc(c3)c4ccc(CO)c(c4)[S](C)(=O)=O)C(=O)Nc5ccccc25"  
D3R  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CC[C@]2([C@H]1c3cccc(c3)c4ccc(c(c4)S(=O)(=O)C)CO)c5ccccc5NC2=O"  
D3R  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CCC2(C1c3cccc(c3)c4ccc(c(c4)S(=O)(=O)C)CO)c5ccccc5NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          D3R
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{tert}-butyl (2'~{R},3~{R})-2'-[3-[4-(hydroxymethyl)-3-methylsulfonyl-phenyl]phenyl]-2-oxidanylidene-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D3R  "Create component"  2019-06-19  PDBJ  
D3R  "Initial release"   2020-04-22  RCSB  
##
