data_D2R
#

_chem_comp.id                                   D2R
_chem_comp.name                                 "6-{2-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenyl}hex-5-ynoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H23 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2,4-Diamino--5-methyl-6-[2'-(4-carboxy-1-pentynyl)-5'-methoxybenzyl]pyrido[2,3-d]pyrimidine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-08-24
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       405.450
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D2R
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3TD8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D2R  N1    N1    N  0  1  Y  N  N  10.356  -1.278  13.110  -1.301   4.762  -0.229  N1    D2R   1  
D2R  C2    C2    C  0  1  Y  N  N  10.614  -2.106  12.073  -0.196   4.794  -0.968  C2    D2R   2  
D2R  N3    N3    N  0  1  Y  N  N  11.641  -1.893  11.234   0.602   3.752  -1.109  N3    D2R   3  
D2R  C4    C4    C  0  1  Y  N  N  12.385  -0.778  11.413   0.322   2.593  -0.497  C4    D2R   4  
D2R  C5    C5    C  0  1  Y  N  N  12.147   0.130  12.506  -0.846   2.514   0.301  C5    D2R   5  
D2R  C6    C6    C  0  1  Y  N  N  11.055  -0.191  13.387  -1.666   3.663   0.416  C6    D2R   6  
D2R  CAA   CAA   C  0  1  N  N  N  18.079   2.311  15.347  -5.934  -3.309  -0.569  CAA   D2R   7  
D2R  CAB   CAB   C  0  1  N  N  N  12.841   2.389  13.732  -2.388   1.185   1.804  CAB   D2R   8  
D2R  NAC   NAC   N  0  1  N  N  N   9.868  -3.232  11.841   0.131   5.970  -1.617  NAC   D2R   9  
D2R  NAD   NAD   N  0  1  N  N  N  10.707   0.571  14.438  -2.813   3.639   1.179  NAD   D2R  10  
D2R  OAE   OAE   O  0  1  N  N  N  12.034   6.644   5.696   5.298  -0.449   1.395  OAE   D2R  11  
D2R  OAF   OAF   O  0  1  N  N  N  11.408   4.981   7.023   7.264  -0.948   0.519  OAF   D2R  12  
D2R  CAG   CAG   C  0  1  N  N  N  16.242   3.393   8.342   1.531  -2.752  -0.894  CAG   D2R  13  
D2R  CAH   CAH   C  0  1  N  N  N  16.718   3.071   9.407   0.376  -2.713  -0.688  CAH   D2R  14  
D2R  CAI   CAI   C  0  1  Y  N  N  19.190   2.090  12.031  -3.266  -3.363  -0.983  CAI   D2R  15  
D2R  CAJ   CAJ   C  0  1  Y  N  N  18.660   2.474  10.800  -1.910  -3.411  -1.227  CAJ   D2R  16  
D2R  CAK   CAK   C  0  1  Y  N  N  14.140   0.529  10.682   0.827   0.393  -0.019  CAK   D2R  17  
D2R  CAL   CAL   C  0  1  Y  N  N  16.938   2.171  13.003  -2.890  -1.833   0.838  CAL   D2R  18  
D2R  CAM   CAM   C  0  1  N  N  N  15.696   3.762   7.027   2.980  -2.801  -1.151  CAM   D2R  19  
D2R  CAN   CAN   C  0  1  N  N  N  14.279   4.233   7.272   3.706  -1.899  -0.152  CAN   D2R  20  
D2R  CAO   CAO   C  0  1  N  N  N  13.661   4.970   6.072   5.212  -1.950  -0.419  CAO   D2R  21  
D2R  CAP   CAP   C  0  1  N  N  N  14.929   2.742  11.722  -0.591  -1.065   1.452  CAP   D2R  22  
D2R  NAQ   NAQ   N  0  1  Y  N  N  13.393  -0.572  10.530   1.111   1.525  -0.623  NAQ   D2R  23  
D2R  OAT   OAT   O  0  1  N  N  N  18.816   1.608  14.343  -5.097  -2.524   0.282  OAT   D2R  24  
D2R  CAU   CAU   C  0  1  N  N  N  12.263   5.578   6.301   5.927  -1.061   0.565  CAU   D2R  25  
D2R  CAX   CAX   C  0  1  Y  N  N  12.955   1.300  12.627  -1.155   1.311   0.947  CAX   D2R  26  
D2R  CAY   CAY   C  0  1  Y  N  N  18.317   1.961  13.136  -3.760  -2.573   0.047  CAY   D2R  27  
D2R  CAZ   CAZ   C  0  1  Y  N  N  17.275   2.684  10.674  -1.033  -2.665  -0.438  CAZ   D2R  28  
D2R  CBA   CBA   C  0  1  Y  N  N  13.988   1.487  11.693  -0.303   0.252   0.777  CBA   D2R  29  
D2R  CBB   CBB   C  0  1  Y  N  N  16.408   2.512  11.782  -1.533  -1.872   0.596  CBB   D2R  30  
D2R  HAA   HAA   H  0  1  N  N  N  18.465   2.042  16.341  -5.806  -2.987  -1.602  HAA   D2R  31  
D2R  HAAA  HAAA  H  0  0  N  N  N  18.190   3.394  15.192  -5.659  -4.360  -0.479  HAAA  D2R  32  
D2R  HAAB  HAAB  H  0  0  N  N  N  17.016   2.037  15.280  -6.976  -3.180  -0.274  HAAB  D2R  33  
D2R  HAB   HAB   H  0  1  N  N  N  13.470   2.109  14.590  -3.251   0.977   1.171  HAB   D2R  34  
D2R  HABA  HABA  H  0  0  N  N  N  13.179   3.356  13.330  -2.255   0.370   2.515  HABA  D2R  35  
D2R  HABB  HABB  H  0  0  N  N  N  11.794   2.473  14.057  -2.551   2.117   2.346  HABB  D2R  36  
D2R  HNAC  HNAC  H  0  0  N  N  N   9.154  -3.309  12.537  -0.441   6.748  -1.528  HNAC  D2R  37  
D2R  HNAA  HNAA  H  0  0  N  N  N   9.446  -3.172  10.936   0.932   6.016  -2.161  HNAA  D2R  38  
D2R  HNAD  HNAD  H  0  0  N  N  N   9.909   0.172  14.890  -3.396   2.864   1.155  HNAD  D2R  39  
D2R  HNAB  HNAB  H  0  0  N  N  N  11.469   0.615  15.084  -3.038   4.398   1.741  HNAB  D2R  40  
D2R  HOAF  HOAF  H  0  0  N  N  N  10.594   5.471   7.021   7.678  -0.367   1.171  HOAF  D2R  41  
D2R  HAI   HAI   H  0  1  N  N  N  20.247   1.895  12.139  -3.945  -3.936  -1.596  HAI   D2R  42  
D2R  HAJ   HAJ   H  0  1  N  N  N  19.309   2.609   9.948  -1.527  -4.026  -2.028  HAJ   D2R  43  
D2R  HAK   HAK   H  0  1  N  N  N  14.929   0.693   9.962   1.490  -0.450  -0.145  HAK   D2R  44  
D2R  HAL   HAL   H  0  1  N  N  N  16.291   2.065  13.861  -3.278  -1.220   1.638  HAL   D2R  45  
D2R  HAM   HAM   H  0  1  N  N  N  16.296   4.564   6.571   3.334  -3.826  -1.040  HAM   D2R  46  
D2R  HAMA  HAMA  H  0  0  N  N  N  15.703   2.896   6.349   3.180  -2.455  -2.165  HAMA  D2R  47  
D2R  HAN   HAN   H  0  1  N  N  N  13.658   3.352   7.490   3.352  -0.874  -0.263  HAN   D2R  48  
D2R  HANA  HANA  H  0  0  N  N  N  14.291   4.923   8.129   3.506  -2.244   0.862  HANA  D2R  49  
D2R  HAO   HAO   H  0  1  N  N  N  14.339   5.795   5.809   5.566  -2.974  -0.308  HAO   D2R  50  
D2R  HAOA  HAOA  H  0  0  N  N  N  13.573   4.244   5.251   5.412  -1.604  -1.434  HAOA  D2R  51  
D2R  HAP   HAP   H  0  1  N  N  N  14.734   3.305  10.797   0.340  -1.615   1.586  HAP   D2R  52  
D2R  HAPA  HAPA  H  0  0  N  N  N  14.662   3.317  12.621  -1.049  -0.882   2.424  HAPA  D2R  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D2R  C2   N1    DOUB  Y  N   1  
D2R  N1   C6    SING  Y  N   2  
D2R  N3   C2    SING  Y  N   3  
D2R  NAC  C2    SING  N  N   4  
D2R  N3   C4    DOUB  Y  N   5  
D2R  NAQ  C4    SING  Y  N   6  
D2R  C4   C5    SING  Y  N   7  
D2R  C5   CAX   SING  Y  N   8  
D2R  C5   C6    DOUB  Y  N   9  
D2R  C6   NAD   SING  N  N  10  
D2R  OAT  CAA   SING  N  N  11  
D2R  CAA  HAA   SING  N  N  12  
D2R  CAA  HAAA  SING  N  N  13  
D2R  CAA  HAAB  SING  N  N  14  
D2R  CAX  CAB   SING  N  N  15  
D2R  CAB  HAB   SING  N  N  16  
D2R  CAB  HABA  SING  N  N  17  
D2R  CAB  HABB  SING  N  N  18  
D2R  NAC  HNAC  SING  N  N  19  
D2R  NAC  HNAA  SING  N  N  20  
D2R  NAD  HNAD  SING  N  N  21  
D2R  NAD  HNAB  SING  N  N  22  
D2R  OAE  CAU   DOUB  N  N  23  
D2R  CAU  OAF   SING  N  N  24  
D2R  OAF  HOAF  SING  N  N  25  
D2R  CAM  CAG   SING  N  N  26  
D2R  CAG  CAH   TRIP  N  N  27  
D2R  CAH  CAZ   SING  N  N  28  
D2R  CAJ  CAI   DOUB  Y  N  29  
D2R  CAI  CAY   SING  Y  N  30  
D2R  CAI  HAI   SING  N  N  31  
D2R  CAZ  CAJ   SING  Y  N  32  
D2R  CAJ  HAJ   SING  N  N  33  
D2R  NAQ  CAK   DOUB  Y  N  34  
D2R  CAK  CBA   SING  Y  N  35  
D2R  CAK  HAK   SING  N  N  36  
D2R  CBB  CAL   SING  Y  N  37  
D2R  CAL  CAY   DOUB  Y  N  38  
D2R  CAL  HAL   SING  N  N  39  
D2R  CAM  CAN   SING  N  N  40  
D2R  CAM  HAM   SING  N  N  41  
D2R  CAM  HAMA  SING  N  N  42  
D2R  CAO  CAN   SING  N  N  43  
D2R  CAN  HAN   SING  N  N  44  
D2R  CAN  HANA  SING  N  N  45  
D2R  CAO  CAU   SING  N  N  46  
D2R  CAO  HAO   SING  N  N  47  
D2R  CAO  HAOA  SING  N  N  48  
D2R  CBA  CAP   SING  N  N  49  
D2R  CAP  CBB   SING  N  N  50  
D2R  CAP  HAP   SING  N  N  51  
D2R  CAP  HAPA  SING  N  N  52  
D2R  CAY  OAT   SING  N  N  53  
D2R  CBA  CAX   DOUB  Y  N  54  
D2R  CAZ  CBB   DOUB  Y  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D2R  SMILES            ACDLabs               12.01  "O=C(O)CCCC#Cc1ccc(OC)cc1Cc2c(c3c(nc2)nc(nc3N)N)C"  
D2R  InChI             InChI                 1.03   "InChI=1S/C22H23N5O3/c1-13-16(12-25-21-19(13)20(23)26-22(24)27-21)10-15-11-17(30-2)9-8-14(15)6-4-3-5-7-18(28)29/h8-9,11-12H,3,5,7,10H2,1-2H3,(H,28,29)(H4,23,24,25,26,27)"  
D2R  InChIKey          InChI                 1.03   MAWHZPJVFGJFTF-UHFFFAOYSA-N  
D2R  SMILES_CANONICAL  CACTVS                3.370  "COc1ccc(C#CCCCC(O)=O)c(Cc2cnc3nc(N)nc(N)c3c2C)c1"  
D2R  SMILES            CACTVS                3.370  "COc1ccc(C#CCCCC(O)=O)c(Cc2cnc3nc(N)nc(N)c3c2C)c1"  
D2R  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "Cc1c(cnc2c1c(nc(n2)N)N)Cc3cc(ccc3C#CCCCC(=O)O)OC"  
D2R  SMILES            "OpenEye OEToolkits"  1.7.2  "Cc1c(cnc2c1c(nc(n2)N)N)Cc3cc(ccc3C#CCCCC(=O)O)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D2R  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-{2-[(2,4-diamino-5-methylpyrido[2,3-d]pyrimidin-6-yl)methyl]-4-methoxyphenyl}hex-5-ynoic acid"  
D2R  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "6-[2-[[2,4-bis(azanyl)-5-methyl-pyrido[2,3-d]pyrimidin-6-yl]methyl]-4-methoxy-phenyl]hex-5-ynoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D2R  "Create component"  2011-08-24  RCSB  
D2R  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D2R
_pdbx_chem_comp_synonyms.name        "2,4-Diamino--5-methyl-6-[2'-(4-carboxy-1-pentynyl)-5'-methoxybenzyl]pyrido[2,3-d]pyrimidine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
