data_CXR
#

_chem_comp.id                                   CXR
_chem_comp.name                                 "CYCLIC ADENOSINE DIPHOSPHATE-RIBOSE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "CYCLIC ADP-RIBOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-10-05
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       541.300
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CXR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2O3S
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CXR  O2B     O2B     O  0  1  N  N  N   4.779   2.971  3.817  -1.815   3.973   0.133  O2B     CXR   1  
CXR  PB      PB      P  0  1  N  N  N   5.523   1.657  3.361  -1.198   2.914  -0.696  PB      CXR   2  
CXR  O3A     O3A     O  0  1  N  N  N   5.780   0.737  4.649   0.233   2.516  -0.083  O3A     CXR   3  
CXR  O1B     O1B     O  0  1  N  N  N   6.806   1.706  2.546  -1.009   3.450  -2.203  O1B     CXR   4  
CXR  O5D     O5D     O  0  1  N  N  N   4.499   0.712  2.554  -2.149   1.610  -0.701  O5D     CXR   5  
CXR  C5D     C5D     C  0  1  N  N  N   3.648   1.199  1.488  -3.572   1.697  -0.587  C5D     CXR   6  
CXR  C4D     C4D     C  0  1  N  N  R   2.229   0.682  1.678  -4.179   0.293  -0.607  C4D     CXR   7  
CXR  C3D     C3D     C  0  1  N  N  S   1.678   0.872  3.092  -4.196  -0.276   0.824  C3D     CXR   8  
CXR  O3D     O3D     O  0  1  N  N  N   1.069   2.193  3.311  -5.477  -0.087   1.429  O3D     CXR   9  
CXR  C2D     C2D     C  0  1  N  N  R   0.676  -0.229  3.163  -3.913  -1.774   0.600  C2D     CXR  10  
CXR  O2D     O2D     O  0  1  N  N  N  -0.474   0.185  2.344  -5.135  -2.513   0.569  O2D     CXR  11  
CXR  O4D     O4D     O  0  1  N  N  N   2.200  -0.763  1.485  -3.389  -0.576  -1.410  O4D     CXR  12  
CXR  C1D     C1D     C  0  1  N  N  R   1.304  -1.377  2.408  -3.215  -1.832  -0.770  C1D     CXR  13  
CXR  N1      N1      N  0  1  N  N  S   2.142  -2.369  3.176  -1.788  -2.107  -0.562  N1      CXR  14  
CXR  C6      C6      C  0  1  N  N  N   1.519  -3.203  4.109  -1.397  -3.362  -0.105  C6      CXR  15  
CXR  N6      N6      N  0  1  N  N  N   0.202  -3.416  4.061  -2.231  -4.367   0.031  N6      CXR  16  
CXR  C5      C5      C  0  1  Y  N  N   2.373  -3.948  5.042   0.034  -3.460   0.212  C5      CXR  17  
CXR  N7      N7      N  0  1  Y  N  N   2.098  -4.884  6.000   0.789  -4.447   0.706  N7      CXR  18  
CXR  C8      C8      C  0  1  Y  N  N   3.276  -5.203  6.612   2.018  -4.034   0.852  C8      CXR  19  
CXR  C2      C2      C  0  1  N  N  N   3.569  -2.137  3.292  -0.873  -1.140  -0.815  C2      CXR  20  
CXR  N3      N3      N  0  1  N  N  N   4.352  -2.806  4.151   0.408  -1.235  -0.567  N3      CXR  21  
CXR  C4      C4      C  0  1  Y  N  N   3.792  -3.701  5.063   0.887  -2.364  -0.012  C4      CXR  22  
CXR  N9      N9      N  0  1  Y  N  N   4.310  -4.506  6.029   2.107  -2.726   0.456  N9      CXR  23  
CXR  "C1'"   "C1'"   C  0  1  N  N  R   5.722  -4.583  6.472   3.293  -1.883   0.568  "C1'"   CXR  24  
CXR  "O4'"   "O4'"   O  0  1  N  N  N   6.064  -3.216  6.895   2.926  -0.547   0.942  "O4'"   CXR  25  
CXR  "C2'"   "C2'"   C  0  1  N  N  R   6.686  -4.993  5.406   4.017  -1.787  -0.787  "C2'"   CXR  26  
CXR  "O2'"   "O2'"   O  0  1  N  N  N   7.086  -6.311  5.670   5.111  -2.705  -0.840  "O2'"   CXR  27  
CXR  "C3'"   "C3'"   C  0  1  N  N  S   7.895  -4.115  5.636   4.528  -0.333  -0.827  "C3'"   CXR  28  
CXR  "C4'"   "C4'"   C  0  1  N  N  R   7.383  -2.839  6.338   3.847   0.375   0.353  "C4'"   CXR  29  
CXR  "C5'"   "C5'"   C  0  1  N  N  N   7.309  -1.591  5.459   3.114   1.617  -0.156  "C5'"   CXR  30  
CXR  "O5'"   "O5'"   O  0  1  N  N  N   7.107  -0.473  6.334   2.650   2.390   0.949  "O5'"   CXR  31  
CXR  PA      PA      P  0  1  N  N  N   6.931   1.040  5.798   1.281   3.238   0.902  PA      CXR  32  
CXR  O2A     O2A     O  0  1  N  N  N   6.257   1.856  6.932   0.703   3.317   2.262  O2A     CXR  33  
CXR  O1A     O1A     O  0  1  N  N  N   8.230   1.526  5.178   1.588   4.723   0.363  O1A     CXR  34  
CXR  HN6     HN6     H  0  1  N  N  N  -0.089  -4.114  4.715  -1.910  -5.223   0.354  HN6     CXR  35  
CXR  "O3'"   "O3'"   O  0  1  N  N  N   8.595  -5.235  6.184   5.948  -0.303  -0.670  "O3'"   CXR  36  
CXR  H1B     H1B     H  0  1  N  N  N   7.044   2.611  2.384  -0.444   4.232  -2.274  H1B     CXR  37  
CXR  H11     H11     H  0  1  N  N  N   3.639   2.299  1.503  -3.832   2.190   0.350  H11     CXR  38  
CXR  H12     H12     H  0  1  N  N  N   4.037   0.846  0.522  -3.968   2.275  -1.422  H12     CXR  39  
CXR  "H4'"   "H4'"   H  0  1  N  N  N   1.630   1.254  0.954  -5.210   0.333  -0.961  "H4'"   CXR  40  
CXR  "H3'"   "H3'"   H  0  1  N  N  N   2.454   0.835  3.870  -3.413   0.180   1.431  "H3'"   CXR  41  
CXR  H2      H2      H  0  1  N  N  N   0.747   2.250  4.203  -5.539  -0.429   2.332  H2      CXR  42  
CXR  H1      H1      H  0  1  N  N  N   0.389  -0.473  4.197  -3.256  -2.158   1.380  H1      CXR  43  
CXR  "H2'"   "H2'"   H  0  1  N  N  N  -1.138  -0.494  2.364  -5.644  -2.467   1.390  "H2'"   CXR  44  
CXR  "H1'"   "H1'"   H  0  1  N  N  N   0.461  -1.962  2.012  -3.662  -2.635  -1.362  "H1'"   CXR  45  
CXR  H8      H8      H  0  1  N  N  N   3.381  -5.899  7.431   2.837  -4.630   1.226  H8      CXR  46  
CXR  H3      H3      H  0  1  N  N  N   4.022  -1.390  2.657  -1.228  -0.220  -1.255  H3      CXR  47  
CXR  H4      H4      H  0  1  N  N  N   5.804  -5.349  7.257   3.980  -2.290   1.309  H4      CXR  48  
CXR  H9      H9      H  0  1  N  N  N   6.263  -4.912  4.394   3.323  -1.972  -1.607  H9      CXR  49  
CXR  H10     H10     H  0  1  N  N  N   7.701  -6.595  5.004   5.602  -2.685  -1.673  H10     CXR  50  
CXR  H6      H6      H  0  1  N  N  N   8.547  -3.569  4.939   4.244   0.141  -1.766  H6      CXR  51  
CXR  H5      H5      H  0  1  N  N  N   8.101  -2.526  7.110   4.586   0.677   1.100  H5      CXR  52  
CXR  "H5'1"  "H5'1"  H  0  0  N  N  N   8.243  -1.468  4.892   3.795   2.218  -0.759  "H5'1"  CXR  53  
CXR  "H5'2"  "H5'2"  H  0  0  N  N  N   6.474  -1.674  4.747   2.265   1.311  -0.767  "H5'2"  CXR  54  
CXR  H1A     H1A     H  0  1  N  N  N   8.495   2.338  5.593   0.808   5.292   0.310  H1A     CXR  55  
CXR  H7      H7      H  0  1  N  N  N   9.469  -4.967  6.444   6.430  -0.766  -1.368  H7      CXR  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CXR  O2B    PB      DOUB  N  N   1  
CXR  PB     O3A     SING  N  N   2  
CXR  PB     O1B     SING  N  N   3  
CXR  PB     O5D     SING  N  N   4  
CXR  O3A    PA      SING  N  N   5  
CXR  O5D    C5D     SING  N  N   6  
CXR  C5D    C4D     SING  N  N   7  
CXR  C4D    C3D     SING  N  N   8  
CXR  C4D    O4D     SING  N  N   9  
CXR  C3D    O3D     SING  N  N  10  
CXR  C3D    C2D     SING  N  N  11  
CXR  C2D    O2D     SING  N  N  12  
CXR  C2D    C1D     SING  N  N  13  
CXR  O4D    C1D     SING  N  N  14  
CXR  C1D    N1      SING  N  N  15  
CXR  N1     C6      SING  N  N  16  
CXR  N1     C2      SING  N  N  17  
CXR  C6     N6      DOUB  N  N  18  
CXR  C6     C5      SING  N  N  19  
CXR  N6     HN6     SING  N  N  20  
CXR  C5     N7      SING  Y  N  21  
CXR  C5     C4      DOUB  Y  N  22  
CXR  N7     C8      DOUB  Y  N  23  
CXR  C8     N9      SING  Y  N  24  
CXR  C2     N3      DOUB  N  N  25  
CXR  N3     C4      SING  N  N  26  
CXR  C4     N9      SING  Y  N  27  
CXR  N9     "C1'"   SING  N  N  28  
CXR  "C1'"  "O4'"   SING  N  N  29  
CXR  "C1'"  "C2'"   SING  N  N  30  
CXR  "O4'"  "C4'"   SING  N  N  31  
CXR  "C2'"  "O2'"   SING  N  N  32  
CXR  "C2'"  "C3'"   SING  N  N  33  
CXR  "C3'"  "C4'"   SING  N  N  34  
CXR  "C4'"  "C5'"   SING  N  N  35  
CXR  "C5'"  "O5'"   SING  N  N  36  
CXR  "O5'"  PA      SING  N  N  37  
CXR  PA     O2A     DOUB  N  N  38  
CXR  PA     O1A     SING  N  N  39  
CXR  "C3'"  "O3'"   SING  N  N  40  
CXR  O1B    H1B     SING  N  N  41  
CXR  C5D    H11     SING  N  N  42  
CXR  C5D    H12     SING  N  N  43  
CXR  C4D    "H4'"   SING  N  N  44  
CXR  C3D    "H3'"   SING  N  N  45  
CXR  O3D    H2      SING  N  N  46  
CXR  C2D    H1      SING  N  N  47  
CXR  O2D    "H2'"   SING  N  N  48  
CXR  C1D    "H1'"   SING  N  N  49  
CXR  C8     H8      SING  N  N  50  
CXR  C2     H3      SING  N  N  51  
CXR  "C1'"  H4      SING  N  N  52  
CXR  "C2'"  H9      SING  N  N  53  
CXR  "O2'"  H10     SING  N  N  54  
CXR  "C3'"  H6      SING  N  N  55  
CXR  "C4'"  H5      SING  N  N  56  
CXR  "C5'"  "H5'1"  SING  N  N  57  
CXR  "C5'"  "H5'2"  SING  N  N  58  
CXR  O1A    H1A     SING  N  N  59  
CXR  "O3'"  H7      SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CXR  SMILES            ACDLabs               12.01  "O=P4(OCC5OC(n1c2N=CN(C(=[N@H])c2nc1)C3OC(C(O)C3O)COP(=O)(O)O4)C(O)C5O)O"  
CXR  InChI             InChI                 1.03   "InChI=1S/C15H21N5O13P2/c16-12-7-13-18-4-19(12)14-10(23)8(21)5(31-14)1-29-34(25,26)33-35(27,28)30-2-6-9(22)11(24)15(32-6)20(13)3-17-7/h3-6,8-11,14-16,21-24H,1-2H2,(H,25,26)(H,27,28)/b16-12+/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1"  
CXR  InChIKey          InChI                 1.03   BQOHYSXSASDCEA-JDDYZZJWSA-N  
CXR  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1[C@@H](O)[C@H]2O[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=N)[N@]2C=Nc45"  
CXR  SMILES            CACTVS                3.370  "O[CH]1[CH](O)[CH]2O[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=N)[N]2C=Nc45"  
CXR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "[H]/N=C/1\c2c3n(cn2)C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(N1C=N3)O5)O)O)O)O)O)O"  
CXR  SMILES            "OpenEye OEToolkits"  1.7.2  "c1nc2c3n1C4C(C(C(O4)COP(=O)(OP(=O)(OCC5C(C(C(O5)N(C2=N)C=N3)O)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          CXR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(2R,3R,4S,5R,8S,10R,13R,14S,15R,16R,24E)-24-imino-7,9,11,25,26-pentaoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-triene-3,4,8,10,14,15-hexol 8,10-dioxide (non-preferred name)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CXR  "Create component"    2005-10-05  RCSB  
CXR  "Modify descriptor"   2011-06-04  RCSB  
CXR  "Other modification"  2011-11-14  RCSB  
CXR  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CXR
_pdbx_chem_comp_synonyms.name        "CYCLIC ADP-RIBOSE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
