data_CGR
#

_chem_comp.id                                   CGR
_chem_comp.name                                 "CYCLIC GUANOSINE DIPHOSPHATE-RIBOSE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "CYCLIC GDP-RIBOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-12-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       559.316
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CGR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2O3T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CGR  O2B     O2B   O  0  1  N  N  N   5.785   3.913   3.384  -2.291  -1.988  -0.495  O2B     CGR   1  
CGR  PB      PB    P  0  1  N  N  S   4.366   4.424   3.562  -0.750  -2.414  -0.732  PB      CGR   2  
CGR  O1B     O1B   O  0  1  N  N  N   3.914   5.789   3.098  -0.125  -1.889  -1.991  O1B     CGR   3  
CGR  O3      O3    O  0  1  N  N  N   3.856   4.385   5.095  -0.778  -4.019  -0.602  O3      CGR   4  
CGR  PA      PA    P  0  1  N  N  S   4.416   3.356   6.218  -1.295  -5.197  -1.572  PA      CGR   5  
CGR  O2A     O2A   O  0  1  N  N  N   5.852   3.707   6.565  -2.781  -5.253  -1.772  O2A     CGR   6  
CGR  O1A     O1A   O  0  1  N  N  N   3.470   3.471   7.362  -0.440  -4.983  -2.929  O1A     CGR   7  
CGR  "O5'R"  RO5*  O  0  0  N  N  N   3.394   3.408   2.784  -0.018  -1.973   0.641  "O5'R"  CGR   8  
CGR  "C5'R"  RC5*  C  0  0  N  N  N   1.953   3.619   2.814   0.293  -0.605   0.864  "C5'R"  CGR   9  
CGR  "C4'R"  RC4*  C  0  0  N  N  R   1.395   3.908   1.409   1.782  -0.447   1.149  "C4'R"  CGR  10  
CGR  "O4'R"  RO4*  O  0  0  N  N  N   1.864   2.973   0.392   2.123  -1.129   2.368  "O4'R"  CGR  11  
CGR  "C1'R"  RC1*  C  0  0  N  N  R   0.971   1.838   0.270   3.496  -1.581   2.285  "C1'R"  CGR  12  
CGR  "C2'R"  RC2*  C  0  0  N  N  R  -0.388   2.369   0.732   3.998  -1.217   0.886  "C2'R"  CGR  13  
CGR  "O2'R"  RO2*  O  0  0  N  N  N  -1.254   2.541  -0.418   4.739   0.001   0.950  "O2'R"  CGR  14  
CGR  "C3'R"  RC3*  C  0  0  N  N  S  -0.128   3.717   1.426   2.711  -1.040   0.103  "C3'R"  CGR  15  
CGR  "O3'R"  RO3*  O  0  0  N  N  N  -0.749   4.846   0.754   2.872  -0.207  -1.026  "O3'R"  CGR  16  
CGR  N7      N7    N  0  1  N  N  N   1.528   0.773   1.173   3.617  -3.005   2.537  N7      CGR  17  
CGR  C8      C8    C  0  1  N  N  N   2.828   0.756   1.558   2.512  -3.945   2.299  C8      CGR  18  
CGR  N9      N9    N  0  1  N  N  N   3.060  -0.287   2.384   3.109  -5.231   2.706  N9      CGR  19  
CGR  "C1'"   C1*   C  0  1  N  N  R   4.329  -0.658   3.044   2.433  -6.509   2.552  "C1'"   CGR  20  
CGR  "O4'"   O4*   O  0  1  N  N  N   4.084  -0.767   4.437   2.333  -6.883   1.160  "O4'"   CGR  21  
CGR  "C2'"   C2*   C  0  1  N  N  R   5.376   0.427   2.872   1.011  -6.500   3.111  "C2'"   CGR  22  
CGR  "O2'"   O2*   O  0  1  N  N  N   6.028   0.228   1.606   0.721  -7.789   3.654  "O2'"   CGR  23  
CGR  "C3'"   C3*   C  0  1  N  N  S   6.237   0.223   4.100   0.171  -6.271   1.871  "C3'"   CGR  24  
CGR  "O3'"   O3*   O  0  1  N  N  N   7.235  -0.785   3.801  -1.158  -6.731   2.006  "O3'"   CGR  25  
CGR  "C4'"   C4*   C  0  1  N  N  R   5.259  -0.303   5.144   0.947  -7.046   0.817  "C4'"   CGR  26  
CGR  "C5'"   C5*   C  0  1  N  N  N   4.803   0.741   6.152   0.732  -6.570  -0.612  "C5'"   CGR  27  
CGR  "O5'"   O5*   O  0  1  N  N  N   4.318   1.926   5.496  -0.654  -6.537  -0.925  "O5'"   CGR  28  
CGR  C4A     C4A   C  0  1  N  N  N   1.924  -0.958   2.550   4.458  -5.048   3.068  C4A     CGR  29  
CGR  C5A     C5A   C  0  1  N  N  N   0.956  -0.312   1.804   4.723  -3.727   2.960  C5A     CGR  30  
CGR  N3A     N3A   N  0  1  N  N  N   1.639  -2.055   3.280   5.384  -5.987   3.456  N3A     CGR  31  
CGR  C2A     C2A   C  0  1  N  N  N   0.374  -2.543   3.256   6.587  -5.560   3.733  C2A     CGR  32  
CGR  N2A     N2A   N  0  1  N  N  N   0.091  -3.633   3.982   7.590  -6.406   4.129  N2A     CGR  33  
CGR  N1A     N1A   N  0  1  N  N  N  -0.616  -1.956   2.517   6.937  -4.214   3.642  N1A     CGR  34  
CGR  C6A     C6A   C  0  1  N  N  N  -0.341  -0.839   1.770   6.066  -3.206   3.254  C6A     CGR  35  
CGR  O6A     O6A   O  0  1  N  N  N  -1.253  -0.329   1.084   6.370  -2.024   3.159  O6A     CGR  36  
CGR  HO2B    HO2B  H  0  0  N  N  N   5.970   3.806   2.458  -2.700  -2.160   0.380  HO2B    CGR  37  
CGR  HO1A    HO1A  H  0  0  N  N  N   3.959   3.495   8.176  -0.870  -5.167  -3.792  HO1A    CGR  38  
CGR  H51     1H5   H  0  1  N  N  N   1.734   4.478   3.466  -0.295  -0.278   1.728  H51     CGR  39  
CGR  H52     2H5   H  0  1  N  N  N   1.477   2.703   3.193   0.002  -0.000  -0.001  H52     CGR  40  
CGR  "HC4'"  HC4*  H  0  0  N  N  N   1.725   4.929   1.166   1.993   0.620   1.294  "HC4'"  CGR  41  
CGR  "HC1'"  HC1*  H  0  0  N  N  N   0.870   1.408  -0.737   4.036  -1.026   3.060  "HC1'"  CGR  42  
CGR  "HC2'"  HC2*  H  0  0  N  N  N  -0.882   1.672   1.425   4.659  -1.964   0.436  "HC2'"  CGR  43  
CGR  HO2     HO2   H  0  1  N  N  N  -2.159   2.579  -0.131   5.662  -0.234   1.153  HO2     CGR  44  
CGR  "HC3'"  HC3*  H  0  0  N  N  N  -0.561   3.690   2.437   2.359  -2.020  -0.234  "HC3'"  CGR  45  
CGR  HO3     HO3   H  0  1  N  N  N  -0.885   5.550   1.377   3.204   0.641  -0.695  HO3     CGR  46  
CGR  H81     1H8   H  0  1  N  N  N   3.467   0.661   0.668   1.649  -3.697   2.924  H81     CGR  47  
CGR  H82     2H8   H  0  1  N  N  N   3.056   1.691   2.090   2.237  -3.962   1.240  H82     CGR  48  
CGR  "H1'"   H1*   H  0  1  N  N  N   4.690  -1.597   2.598   3.021  -7.295   3.042  "H1'"   CGR  49  
CGR  "H2'"   H2*   H  0  1  N  N  N   5.026   1.469   2.825   0.831  -5.770   3.904  "H2'"   CGR  50  
CGR  "HO2'"  HO2*  H  0  0  N  N  N   5.376   0.184   0.917  -0.068  -8.125   3.193  "HO2'"  CGR  51  
CGR  "H3'"   H3*   H  0  1  N  N  N   6.760   1.131   4.434   0.143  -5.205   1.628  "H3'"   CGR  52  
CGR  "HO3'"  HO3*  H  0  0  N  N  N   7.453  -0.751   2.877  -1.571  -6.636   1.134  "HO3'"  CGR  53  
CGR  "H4'"   H4*   H  0  1  N  N  N   5.779  -1.090   5.709   0.696  -8.113   0.875  "H4'"   CGR  54  
CGR  "H5'1"  1H5*  H  0  0  N  N  N   3.993   0.316   6.762   1.197  -5.589  -0.762  "H5'1"  CGR  55  
CGR  "H5'2"  2H5*  H  0  0  N  N  N   5.663   1.018   6.779   1.228  -7.251  -1.312  "H5'2"  CGR  56  
CGR  H2A1    1H2A  H  0  0  N  N  N  -0.872  -3.880   3.872   7.387  -7.376   4.202  H2A1    CGR  57  
CGR  H2A2    2H2A  H  0  0  N  N  N   0.747  -4.128   4.551   8.483  -6.017   4.329  H2A2    CGR  58  
CGR  HN1A    HN1A  H  0  0  N  N  N  -1.539  -2.341   2.521   7.892  -3.955   3.870  HN1A    CGR  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CGR  O2B     PB      SING  N  N   1  
CGR  O2B     HO2B    SING  N  N   2  
CGR  PB      "O5'R"  SING  N  N   3  
CGR  PB      O1B     DOUB  N  N   4  
CGR  PB      O3      SING  N  N   5  
CGR  O3      PA      SING  N  N   6  
CGR  PA      "O5'"   SING  N  N   7  
CGR  PA      O2A     DOUB  N  N   8  
CGR  PA      O1A     SING  N  N   9  
CGR  O1A     HO1A    SING  N  N  10  
CGR  "O5'R"  "C5'R"  SING  N  N  11  
CGR  "C5'R"  "C4'R"  SING  N  N  12  
CGR  "C5'R"  H51     SING  N  N  13  
CGR  "C5'R"  H52     SING  N  N  14  
CGR  "C4'R"  "O4'R"  SING  N  N  15  
CGR  "C4'R"  "C3'R"  SING  N  N  16  
CGR  "C4'R"  "HC4'"  SING  N  N  17  
CGR  "O4'R"  "C1'R"  SING  N  N  18  
CGR  "C1'R"  "C2'R"  SING  N  N  19  
CGR  "C1'R"  N7      SING  N  N  20  
CGR  "C1'R"  "HC1'"  SING  N  N  21  
CGR  "C2'R"  "O2'R"  SING  N  N  22  
CGR  "C2'R"  "C3'R"  SING  N  N  23  
CGR  "C2'R"  "HC2'"  SING  N  N  24  
CGR  "O2'R"  HO2     SING  N  N  25  
CGR  "C3'R"  "O3'R"  SING  N  N  26  
CGR  "C3'R"  "HC3'"  SING  N  N  27  
CGR  "O3'R"  HO3     SING  N  N  28  
CGR  N7      C8      SING  N  N  29  
CGR  N7      C5A     SING  N  N  30  
CGR  C8      N9      SING  N  N  31  
CGR  C8      H81     SING  N  N  32  
CGR  C8      H82     SING  N  N  33  
CGR  N9      C4A     SING  N  N  34  
CGR  N9      "C1'"   SING  N  N  35  
CGR  "C1'"   "C2'"   SING  N  N  36  
CGR  "C1'"   "O4'"   SING  N  N  37  
CGR  "C1'"   "H1'"   SING  N  N  38  
CGR  "O4'"   "C4'"   SING  N  N  39  
CGR  "C2'"   "O2'"   SING  N  N  40  
CGR  "C2'"   "C3'"   SING  N  N  41  
CGR  "C2'"   "H2'"   SING  N  N  42  
CGR  "O2'"   "HO2'"  SING  N  N  43  
CGR  "C3'"   "O3'"   SING  N  N  44  
CGR  "C3'"   "C4'"   SING  N  N  45  
CGR  "C3'"   "H3'"   SING  N  N  46  
CGR  "O3'"   "HO3'"  SING  N  N  47  
CGR  "C4'"   "C5'"   SING  N  N  48  
CGR  "C4'"   "H4'"   SING  N  N  49  
CGR  "C5'"   "O5'"   SING  N  N  50  
CGR  "C5'"   "H5'1"  SING  N  N  51  
CGR  "C5'"   "H5'2"  SING  N  N  52  
CGR  C4A     C5A     DOUB  N  N  53  
CGR  C4A     N3A     SING  N  N  54  
CGR  C5A     C6A     SING  N  N  55  
CGR  N3A     C2A     DOUB  N  N  56  
CGR  C2A     N1A     SING  N  N  57  
CGR  C2A     N2A     SING  N  N  58  
CGR  N2A     H2A1    SING  N  N  59  
CGR  N2A     H2A2    SING  N  N  60  
CGR  N1A     C6A     SING  N  N  61  
CGR  N1A     HN1A    SING  N  N  62  
CGR  C6A     O6A     DOUB  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CGR  SMILES            ACDLabs               10.04  "O=C1C=2N3CN(C=2N=C(N)N1)C5OC(COP(=O)(O)OP(=O)(O)OCC4OC3C(O)C4O)C(O)C5O"  
CGR  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC2=C(N3CN2[C@@H]4O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]5O[C@@H]3[C@H](O)[C@@H]5O)[C@@H](O)[C@H]4O)C(=O)N1"  
CGR  SMILES            CACTVS                3.341  "NC1=NC2=C(N3CN2[CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]3[CH](O)[CH]5O)[CH](O)[CH]4O)C(=O)N1"  
CGR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@@H]2[C@H]([C@H]([C@@H](O2)N3CN([C@H]4[C@@H]([C@@H]([C@H](O4)CO[P@@](=O)(O[P@](=O)(O1)O)O)O)O)C5=C3C(=O)NC(=N5)N)O)O"  
CGR  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C2C(C(C(O2)N3CN(C4C(C(C(O4)COP(=O)(OP(=O)(O1)O)O)O)O)C5=C3C(=O)NC(=N5)N)O)O"  
CGR  InChI             InChI                 1.03   "InChI=1S/C15H23N5O14P2/c16-15-17-11-6(12(25)18-15)19-3-20(11)14-10(24)8(22)5(33-14)2-31-36(28,29)34-35(26,27)30-1-4-7(21)9(23)13(19)32-4/h4-5,7-10,13-14,21-24H,1-3H2,(H,26,27)(H,28,29)(H3,16,17,18,25)/t4-,5-,7-,8-,9-,10-,13-,14-/m1/s1"  
CGR  InChIKey          InChI                 1.03   XBIQPWWXYHHVOT-AIKIOGRUSA-N  
#
_pdbx_chem_comp_identifier.comp_id          CGR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "(2R,3R,4S,5R,8S,10S,13R,14S,15R,16R)-20-amino-3,4,8,10,14,15-hexahydroxy-7,9,11,25,26-pentaoxa-1,17,19,21-tetraaza-8,10-diphosphapentacyclo[15.6.1.1~2,5~.1~13,16~.0~18,23~]hexacosa-18(23),19-dien-22-one 8,10-dioxide (non-preferred name)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CGR  "Create component"   2006-12-11  RCSB  
CGR  "Modify descriptor"  2011-06-04  RCSB  
CGR  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CGR
_pdbx_chem_comp_synonyms.name        "CYCLIC GDP-RIBOSE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
